data_2VIF # _entry.id 2VIF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VIF pdb_00002vif 10.2210/pdb2vif/pdb PDBE EBI-34612 ? ? WWPDB D_1290034612 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1QZJ unspecified 'INACTIVE WILD TYPE HUMAN C-KIT KINASE DOMAIN MOLECULAR MODEL' PDB 1T45 unspecified 'STRUCTURAL BASIS FOR THE AUTOINHIBITION AND STI- 571INHIBITION OF C-KIT TYROSINE KINASE' PDB 1PKG unspecified 'STRUCTURE OF A C-KIT KINASE PRODUCT COMPLEX' PDB 1QZK unspecified 'MOLECULAR MODEL OF MUTATED D816V HUMAN C- KIT KINASE DOMAIN' PDB 1R01 unspecified 'MOLECULAR MODEL OF ACTIVE WILD TYPE HUMAN C-KIT KINASEDOMAIN PHOSPHORYLATED ON TYR 823 AND IN COMPLEX WITHATP/2MG' PDB 1T46 unspecified 'STRUCTURAL BASIS FOR THE AUTOINHIBITION AND STI- 571INHIBITION OF C-KIT TYROSINE KINASE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VIF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-11-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bullock, A.' 1 'Pike, A.C.W.' 2 'Savitsky, P.' 3 'Keates, T.' 4 'Pilka, E.S.' 5 'von Delft, F.' 6 'Edwards, A.' 7 'Weigelt, J.' 8 'Arrowsmith, C.H.' 9 'Knapp, S.' 10 # _citation.id primary _citation.title 'Structural Basis for C-Kit Inhibition by the Suppressor of Cytokine Signaling 6 (Socs6) Ubiquitin Ligase.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 480 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21030588 _citation.pdbx_database_id_DOI 10.1074/JBC.M110.173526 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zadjali, F.' 1 ? primary 'Pike, A.C.W.' 2 ? primary 'Vesterlund, M.' 3 ? primary 'Sun, J.' 4 ? primary 'Wu, C.' 5 ? primary 'Li, S.S.' 6 ? primary 'Ronnstrand, L.' 7 ? primary 'Knapp, S.' 8 ? primary 'Bullock, A.' 9 ? primary 'Flores-Morales, A.' 10 ? # _cell.entry_id 2VIF _cell.length_a 30.377 _cell.length_b 60.143 _cell.length_c 71.367 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VIF _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SUPPRESSOR OF CYTOKINE SIGNALLING 6' 15918.718 1 ? ? 'SH2 DOMAIN, RESIDUES 361-499' ? 2 polymer man 'MAST/STEM CELL GROWTH FACTOR RECEPTOR' 1349.297 1 ? ? 'RESIDUES 564-574' ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 125 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'SOCS-6, SUPPRESSOR OF CYTOKINE SIGNALING 4, SOCS-4, CYTOKINE-INDUCIBLE SH2 PROTEIN 4, CIS-4' 2 'SCFR, PROTO-ONCOGENE TYROSINE-PROTEIN KINASE KIT, C-KIT, CD117 ANTIGEN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SMVQSSGPMDVTSLTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNG RFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPVSRFMQVRS ; ;SMVQSSGPMDVTSLTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNG RFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPVSRFMQVRS ; A ? 2 'polypeptide(L)' no yes 'NGNN(PTR)VYIDPT' NGNNYVYIDPT P ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 VAL n 1 4 GLN n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 MET n 1 10 ASP n 1 11 VAL n 1 12 THR n 1 13 SER n 1 14 LEU n 1 15 THR n 1 16 GLU n 1 17 GLU n 1 18 LEU n 1 19 LYS n 1 20 LYS n 1 21 LEU n 1 22 ALA n 1 23 LYS n 1 24 GLN n 1 25 GLY n 1 26 TRP n 1 27 TYR n 1 28 TRP n 1 29 GLY n 1 30 PRO n 1 31 ILE n 1 32 THR n 1 33 ARG n 1 34 TRP n 1 35 GLU n 1 36 ALA n 1 37 GLU n 1 38 GLY n 1 39 LYS n 1 40 LEU n 1 41 ALA n 1 42 ASN n 1 43 VAL n 1 44 PRO n 1 45 ASP n 1 46 GLY n 1 47 SER n 1 48 PHE n 1 49 LEU n 1 50 VAL n 1 51 ARG n 1 52 ASP n 1 53 SER n 1 54 SER n 1 55 ASP n 1 56 ASP n 1 57 ARG n 1 58 TYR n 1 59 LEU n 1 60 LEU n 1 61 SER n 1 62 LEU n 1 63 SER n 1 64 PHE n 1 65 ARG n 1 66 SER n 1 67 HIS n 1 68 GLY n 1 69 LYS n 1 70 THR n 1 71 LEU n 1 72 HIS n 1 73 THR n 1 74 ARG n 1 75 ILE n 1 76 GLU n 1 77 HIS n 1 78 SER n 1 79 ASN n 1 80 GLY n 1 81 ARG n 1 82 PHE n 1 83 SER n 1 84 PHE n 1 85 TYR n 1 86 GLU n 1 87 GLN n 1 88 PRO n 1 89 ASP n 1 90 VAL n 1 91 GLU n 1 92 GLY n 1 93 HIS n 1 94 THR n 1 95 SER n 1 96 ILE n 1 97 VAL n 1 98 ASP n 1 99 LEU n 1 100 ILE n 1 101 GLU n 1 102 HIS n 1 103 SER n 1 104 ILE n 1 105 GLY n 1 106 ASP n 1 107 SER n 1 108 GLU n 1 109 ASN n 1 110 GLY n 1 111 ALA n 1 112 PHE n 1 113 CYS n 1 114 TYR n 1 115 SER n 1 116 ARG n 1 117 SER n 1 118 ARG n 1 119 LEU n 1 120 PRO n 1 121 GLY n 1 122 SER n 1 123 ALA n 1 124 THR n 1 125 TYR n 1 126 PRO n 1 127 VAL n 1 128 ARG n 1 129 LEU n 1 130 THR n 1 131 ASN n 1 132 PRO n 1 133 VAL n 1 134 SER n 1 135 ARG n 1 136 PHE n 1 137 MET n 1 138 GLN n 1 139 VAL n 1 140 ARG n 1 141 SER n 2 1 ASN n 2 2 GLY n 2 3 ASN n 2 4 ASN n 2 5 PTR n 2 6 VAL n 2 7 TYR n 2 8 ILE n 2 9 ASP n 2 10 PRO n 2 11 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 511693 ? ? ? ? ? ? BL21-ELONGIN ? ? ? ? ? ? ? PLASMID ? ? ? PNIC28-BSA4 ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 511693 ? ? ? ? ? ? BL21-ELONGIN ? ? ? ? ? ? ? PLASMID ? ? ? PNIC28-BSA4 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP SOCS6_HUMAN 1 ? ? O14544 ? 2 UNP KIT_HUMAN 2 ? ? P10721 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VIF A 3 ? 141 ? O14544 361 ? 499 ? 361 499 2 2 2VIF P 1 ? 11 ? P10721 564 ? 574 ? 564 574 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2VIF SER A 1 ? UNP O14544 ? ? 'expression tag' -1 1 1 2VIF MET A 2 ? UNP O14544 ? ? 'expression tag' 0 2 1 2VIF ASP A 10 ? UNP O14544 VAL 368 conflict 368 3 1 2VIF GLY A 105 ? UNP O14544 ARG 463 conflict 463 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VIF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 39.84 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2M AMMONIUM SULPHATE, 30% PEG5000 MONOMETHYLETHER, 0.1M MES PH6.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2007-10-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98248 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 0.98248 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VIF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.03 _reflns.d_resolution_high 1.45 _reflns.number_obs 23956 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.70 _reflns.B_iso_Wilson_estimate 14.80 _reflns.pdbx_redundancy 4.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.53 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs 0.704 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 3.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VIF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 22652 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.69 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.142 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.139 _refine.ls_R_factor_R_free 0.198 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1210 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.B_iso_mean 14.05 _refine.aniso_B[1][1] 0.16000 _refine.aniso_B[2][2] -0.23000 _refine.aniso_B[3][3] 0.06000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2IZV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.071 _refine.pdbx_overall_ESU_R_Free 0.070 _refine.overall_SU_ML 0.044 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.461 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1118 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 1247 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 35.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 1205 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 839 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.475 1.951 ? 1633 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.987 3.000 ? 2025 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.317 5.000 ? 143 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.788 22.034 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.192 15.000 ? 201 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.103 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 175 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1326 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 274 'X-RAY DIFFRACTION' ? r_nbd_refined 0.189 0.200 ? 206 'X-RAY DIFFRACTION' ? r_nbd_other 0.195 0.200 ? 870 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.185 0.200 ? 568 'X-RAY DIFFRACTION' ? r_nbtor_other 0.084 0.200 ? 631 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.151 0.200 ? 96 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.242 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.275 0.200 ? 44 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.132 0.200 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 4.883 3.000 ? 762 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 6.013 5.000 ? 1164 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 7.643 8.000 ? 545 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 9.640 11.000 ? 468 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.45 _refine_ls_shell.d_res_low 1.49 _refine_ls_shell.number_reflns_R_work 1620 _refine_ls_shell.R_factor_R_work 0.1490 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3160 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VIF _struct.title 'Crystal structure of SOCS6 SH2 domain in complex with a c-KIT phosphopeptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VIF _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'GROWTH REGULATION, SIGNAL TRANSDUCTION INHIBITOR, KIT REGULATOR, PHOSPHOTYROSINE, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 13 ? GLY A 25 ? SER A 371 GLY A 383 1 ? 13 HELX_P HELX_P2 2 THR A 32 ? LEU A 40 ? THR A 390 LEU A 398 1 ? 9 HELX_P HELX_P3 3 SER A 95 ? GLY A 110 ? SER A 453 GLY A 468 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ASN 4 C ? ? ? 1_555 B PTR 5 N ? ? P ASN 567 P PTR 568 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale2 covale both ? B PTR 5 C ? ? ? 1_555 B VAL 6 N ? ? P PTR 568 P VAL 569 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 48 ? ASP A 52 ? PHE A 406 ASP A 410 AA 2 LEU A 60 ? SER A 66 ? LEU A 418 SER A 424 AA 3 LYS A 69 ? SER A 78 ? LYS A 427 SER A 436 AA 4 ARG A 81 ? PHE A 84 ? ARG A 439 PHE A 442 AB 1 TYR A 125 ? PRO A 126 ? TYR A 483 PRO A 484 AB 2 CYS A 113 ? SER A 115 ? CYS A 471 SER A 473 AB 3 TYR B 7 ? ILE B 8 ? TYR P 570 ILE P 571 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ARG A 51 ? N ARG A 409 O SER A 61 ? O SER A 419 AA 2 3 N SER A 66 ? N SER A 424 O LYS A 69 ? O LYS A 427 AA 3 4 N SER A 78 ? N SER A 436 O ARG A 81 ? O ARG A 439 AB 1 2 N TYR A 125 ? N TYR A 483 O TYR A 114 ? O TYR A 472 AB 2 3 N SER A 115 ? N SER A 473 O TYR B 7 ? O TYR P 570 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id EDO _struct_site.pdbx_auth_seq_id 1497 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE EDO A 1497' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 VAL A 97 ? VAL A 455 . ? 3_645 ? 2 AC1 7 SER A 115 ? SER A 473 . ? 1_555 ? 3 AC1 7 ARG A 116 ? ARG A 474 . ? 1_555 ? 4 AC1 7 SER A 122 ? SER A 480 . ? 1_555 ? 5 AC1 7 ALA A 123 ? ALA A 481 . ? 1_555 ? 6 AC1 7 TYR A 125 ? TYR A 483 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 2118 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VIF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VIF _atom_sites.fract_transf_matrix[1][1] 0.032920 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016627 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014012 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -1 -1 SER SER A . n A 1 2 MET 2 0 0 MET MET A . n A 1 3 VAL 3 361 361 VAL VAL A . n A 1 4 GLN 4 362 362 GLN GLN A . n A 1 5 SER 5 363 363 SER SER A . n A 1 6 SER 6 364 ? ? ? A . n A 1 7 GLY 7 365 ? ? ? A . n A 1 8 PRO 8 366 ? ? ? A . n A 1 9 MET 9 367 ? ? ? A . n A 1 10 ASP 10 368 ? ? ? A . n A 1 11 VAL 11 369 ? ? ? A . n A 1 12 THR 12 370 ? ? ? A . n A 1 13 SER 13 371 371 SER SER A . n A 1 14 LEU 14 372 372 LEU LEU A . n A 1 15 THR 15 373 373 THR THR A . n A 1 16 GLU 16 374 374 GLU GLU A . n A 1 17 GLU 17 375 375 GLU GLU A . n A 1 18 LEU 18 376 376 LEU LEU A . n A 1 19 LYS 19 377 377 LYS LYS A . n A 1 20 LYS 20 378 378 LYS LYS A . n A 1 21 LEU 21 379 379 LEU LEU A . n A 1 22 ALA 22 380 380 ALA ALA A . n A 1 23 LYS 23 381 381 LYS LYS A . n A 1 24 GLN 24 382 382 GLN GLN A . n A 1 25 GLY 25 383 383 GLY GLY A . n A 1 26 TRP 26 384 384 TRP TRP A . n A 1 27 TYR 27 385 385 TYR TYR A . n A 1 28 TRP 28 386 386 TRP TRP A . n A 1 29 GLY 29 387 387 GLY GLY A . n A 1 30 PRO 30 388 388 PRO PRO A . n A 1 31 ILE 31 389 389 ILE ILE A . n A 1 32 THR 32 390 390 THR THR A . n A 1 33 ARG 33 391 391 ARG ARG A . n A 1 34 TRP 34 392 392 TRP TRP A . n A 1 35 GLU 35 393 393 GLU GLU A . n A 1 36 ALA 36 394 394 ALA ALA A . n A 1 37 GLU 37 395 395 GLU GLU A . n A 1 38 GLY 38 396 396 GLY GLY A . n A 1 39 LYS 39 397 397 LYS LYS A . n A 1 40 LEU 40 398 398 LEU LEU A . n A 1 41 ALA 41 399 399 ALA ALA A . n A 1 42 ASN 42 400 400 ASN ASN A . n A 1 43 VAL 43 401 401 VAL VAL A . n A 1 44 PRO 44 402 402 PRO PRO A . n A 1 45 ASP 45 403 403 ASP ASP A . n A 1 46 GLY 46 404 404 GLY GLY A . n A 1 47 SER 47 405 405 SER SER A . n A 1 48 PHE 48 406 406 PHE PHE A . n A 1 49 LEU 49 407 407 LEU LEU A . n A 1 50 VAL 50 408 408 VAL VAL A . n A 1 51 ARG 51 409 409 ARG ARG A . n A 1 52 ASP 52 410 410 ASP ASP A . n A 1 53 SER 53 411 411 SER SER A . n A 1 54 SER 54 412 412 SER SER A . n A 1 55 ASP 55 413 413 ASP ASP A . n A 1 56 ASP 56 414 414 ASP ASP A . n A 1 57 ARG 57 415 415 ARG ARG A . n A 1 58 TYR 58 416 416 TYR TYR A . n A 1 59 LEU 59 417 417 LEU LEU A . n A 1 60 LEU 60 418 418 LEU LEU A . n A 1 61 SER 61 419 419 SER SER A . n A 1 62 LEU 62 420 420 LEU LEU A . n A 1 63 SER 63 421 421 SER SER A . n A 1 64 PHE 64 422 422 PHE PHE A . n A 1 65 ARG 65 423 423 ARG ARG A . n A 1 66 SER 66 424 424 SER SER A . n A 1 67 HIS 67 425 425 HIS HIS A . n A 1 68 GLY 68 426 426 GLY GLY A . n A 1 69 LYS 69 427 427 LYS LYS A . n A 1 70 THR 70 428 428 THR THR A . n A 1 71 LEU 71 429 429 LEU LEU A . n A 1 72 HIS 72 430 430 HIS HIS A . n A 1 73 THR 73 431 431 THR THR A . n A 1 74 ARG 74 432 432 ARG ARG A . n A 1 75 ILE 75 433 433 ILE ILE A . n A 1 76 GLU 76 434 434 GLU GLU A . n A 1 77 HIS 77 435 435 HIS HIS A . n A 1 78 SER 78 436 436 SER SER A . n A 1 79 ASN 79 437 437 ASN ASN A . n A 1 80 GLY 80 438 438 GLY GLY A . n A 1 81 ARG 81 439 439 ARG ARG A . n A 1 82 PHE 82 440 440 PHE PHE A . n A 1 83 SER 83 441 441 SER SER A . n A 1 84 PHE 84 442 442 PHE PHE A . n A 1 85 TYR 85 443 443 TYR TYR A . n A 1 86 GLU 86 444 444 GLU GLU A . n A 1 87 GLN 87 445 445 GLN GLN A . n A 1 88 PRO 88 446 446 PRO PRO A . n A 1 89 ASP 89 447 447 ASP ASP A . n A 1 90 VAL 90 448 448 VAL VAL A . n A 1 91 GLU 91 449 449 GLU GLU A . n A 1 92 GLY 92 450 450 GLY GLY A . n A 1 93 HIS 93 451 451 HIS HIS A . n A 1 94 THR 94 452 452 THR THR A . n A 1 95 SER 95 453 453 SER SER A . n A 1 96 ILE 96 454 454 ILE ILE A . n A 1 97 VAL 97 455 455 VAL VAL A . n A 1 98 ASP 98 456 456 ASP ASP A . n A 1 99 LEU 99 457 457 LEU LEU A . n A 1 100 ILE 100 458 458 ILE ILE A . n A 1 101 GLU 101 459 459 GLU GLU A . n A 1 102 HIS 102 460 460 HIS HIS A . n A 1 103 SER 103 461 461 SER SER A . n A 1 104 ILE 104 462 462 ILE ILE A . n A 1 105 GLY 105 463 463 GLY GLY A . n A 1 106 ASP 106 464 464 ASP ASP A . n A 1 107 SER 107 465 465 SER SER A . n A 1 108 GLU 108 466 466 GLU GLU A . n A 1 109 ASN 109 467 467 ASN ASN A . n A 1 110 GLY 110 468 468 GLY GLY A . n A 1 111 ALA 111 469 469 ALA ALA A . n A 1 112 PHE 112 470 470 PHE PHE A . n A 1 113 CYS 113 471 471 CYS CYS A . n A 1 114 TYR 114 472 472 TYR TYR A . n A 1 115 SER 115 473 473 SER SER A . n A 1 116 ARG 116 474 474 ARG ARG A . n A 1 117 SER 117 475 475 SER SER A . n A 1 118 ARG 118 476 476 ARG ARG A . n A 1 119 LEU 119 477 477 LEU LEU A . n A 1 120 PRO 120 478 478 PRO PRO A . n A 1 121 GLY 121 479 479 GLY GLY A . n A 1 122 SER 122 480 480 SER SER A . n A 1 123 ALA 123 481 481 ALA ALA A . n A 1 124 THR 124 482 482 THR THR A . n A 1 125 TYR 125 483 483 TYR TYR A . n A 1 126 PRO 126 484 484 PRO PRO A . n A 1 127 VAL 127 485 485 VAL VAL A . n A 1 128 ARG 128 486 486 ARG ARG A . n A 1 129 LEU 129 487 487 LEU LEU A . n A 1 130 THR 130 488 488 THR THR A . n A 1 131 ASN 131 489 489 ASN ASN A . n A 1 132 PRO 132 490 490 PRO PRO A . n A 1 133 VAL 133 491 491 VAL VAL A . n A 1 134 SER 134 492 492 SER SER A . n A 1 135 ARG 135 493 493 ARG ARG A . n A 1 136 PHE 136 494 494 PHE PHE A . n A 1 137 MET 137 495 495 MET MET A . n A 1 138 GLN 138 496 496 GLN GLN A . n A 1 139 VAL 139 497 ? ? ? A . n A 1 140 ARG 140 498 ? ? ? A . n A 1 141 SER 141 499 ? ? ? A . n B 2 1 ASN 1 564 ? ? ? P . n B 2 2 GLY 2 565 ? ? ? P . n B 2 3 ASN 3 566 566 ASN ASN P . n B 2 4 ASN 4 567 567 ASN ASN P . n B 2 5 PTR 5 568 568 PTR PTR P . n B 2 6 VAL 6 569 569 VAL VAL P . n B 2 7 TYR 7 570 570 TYR TYR P . n B 2 8 ILE 8 571 571 ILE ILE P . n B 2 9 ASP 9 572 572 ASP ASP P . n B 2 10 PRO 10 573 573 PRO PRO P . n B 2 11 THR 11 574 574 THR THR P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO 1 1497 1497 EDO EDO A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2042 2042 HOH HOH A . D 4 HOH 42 2043 2043 HOH HOH A . D 4 HOH 43 2044 2044 HOH HOH A . D 4 HOH 44 2045 2045 HOH HOH A . D 4 HOH 45 2046 2046 HOH HOH A . D 4 HOH 46 2047 2047 HOH HOH A . D 4 HOH 47 2048 2048 HOH HOH A . D 4 HOH 48 2049 2049 HOH HOH A . D 4 HOH 49 2050 2050 HOH HOH A . D 4 HOH 50 2051 2051 HOH HOH A . D 4 HOH 51 2052 2052 HOH HOH A . D 4 HOH 52 2053 2053 HOH HOH A . D 4 HOH 53 2054 2054 HOH HOH A . D 4 HOH 54 2055 2055 HOH HOH A . D 4 HOH 55 2056 2056 HOH HOH A . D 4 HOH 56 2057 2057 HOH HOH A . D 4 HOH 57 2058 2058 HOH HOH A . D 4 HOH 58 2059 2059 HOH HOH A . D 4 HOH 59 2060 2060 HOH HOH A . D 4 HOH 60 2061 2061 HOH HOH A . D 4 HOH 61 2062 2062 HOH HOH A . D 4 HOH 62 2063 2063 HOH HOH A . D 4 HOH 63 2064 2064 HOH HOH A . D 4 HOH 64 2065 2065 HOH HOH A . D 4 HOH 65 2066 2066 HOH HOH A . D 4 HOH 66 2067 2067 HOH HOH A . D 4 HOH 67 2068 2068 HOH HOH A . D 4 HOH 68 2070 2070 HOH HOH A . D 4 HOH 69 2071 2071 HOH HOH A . D 4 HOH 70 2072 2072 HOH HOH A . D 4 HOH 71 2073 2073 HOH HOH A . D 4 HOH 72 2074 2074 HOH HOH A . D 4 HOH 73 2075 2075 HOH HOH A . D 4 HOH 74 2076 2076 HOH HOH A . D 4 HOH 75 2077 2077 HOH HOH A . D 4 HOH 76 2078 2078 HOH HOH A . D 4 HOH 77 2079 2079 HOH HOH A . D 4 HOH 78 2080 2080 HOH HOH A . D 4 HOH 79 2081 2081 HOH HOH A . D 4 HOH 80 2082 2082 HOH HOH A . D 4 HOH 81 2083 2083 HOH HOH A . D 4 HOH 82 2084 2084 HOH HOH A . D 4 HOH 83 2085 2085 HOH HOH A . D 4 HOH 84 2086 2086 HOH HOH A . D 4 HOH 85 2087 2087 HOH HOH A . D 4 HOH 86 2088 2088 HOH HOH A . D 4 HOH 87 2089 2089 HOH HOH A . D 4 HOH 88 2090 2090 HOH HOH A . D 4 HOH 89 2091 2091 HOH HOH A . D 4 HOH 90 2092 2092 HOH HOH A . D 4 HOH 91 2093 2093 HOH HOH A . D 4 HOH 92 2094 2094 HOH HOH A . D 4 HOH 93 2095 2095 HOH HOH A . D 4 HOH 94 2097 2097 HOH HOH A . D 4 HOH 95 2098 2098 HOH HOH A . D 4 HOH 96 2099 2099 HOH HOH A . D 4 HOH 97 2100 2100 HOH HOH A . D 4 HOH 98 2101 2101 HOH HOH A . D 4 HOH 99 2102 2102 HOH HOH A . D 4 HOH 100 2103 2103 HOH HOH A . D 4 HOH 101 2104 2104 HOH HOH A . D 4 HOH 102 2105 2105 HOH HOH A . D 4 HOH 103 2106 2106 HOH HOH A . D 4 HOH 104 2107 2107 HOH HOH A . D 4 HOH 105 2108 2108 HOH HOH A . D 4 HOH 106 2110 2110 HOH HOH A . D 4 HOH 107 2111 2111 HOH HOH A . D 4 HOH 108 2112 2112 HOH HOH A . D 4 HOH 109 2113 2113 HOH HOH A . D 4 HOH 110 2114 2114 HOH HOH A . D 4 HOH 111 2115 2115 HOH HOH A . D 4 HOH 112 2116 2116 HOH HOH A . D 4 HOH 113 2117 2117 HOH HOH A . D 4 HOH 114 2118 2118 HOH HOH A . E 4 HOH 1 2001 2001 HOH HOH P . E 4 HOH 2 2002 2002 HOH HOH P . E 4 HOH 3 2003 2003 HOH HOH P . E 4 HOH 4 2004 2004 HOH HOH P . E 4 HOH 5 2005 2005 HOH HOH P . E 4 HOH 6 2006 2006 HOH HOH P . E 4 HOH 7 2007 2007 HOH HOH P . E 4 HOH 8 2008 2008 HOH HOH P . E 4 HOH 9 2009 2009 HOH HOH P . E 4 HOH 10 2010 2010 HOH HOH P . E 4 HOH 11 2011 2011 HOH HOH P . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id PTR _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id P _pdbx_struct_mod_residue.auth_comp_id PTR _pdbx_struct_mod_residue.auth_seq_id 568 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details O-PHOSPHOTYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1890 ? 1 MORE -9.4 ? 1 'SSA (A^2)' 8300 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-25 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.3.0040 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2VIF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'TWO CLONING ARTIFACTS - V368D AND R463G' _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 NE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ARG _pdbx_validate_rmsd_bond.auth_seq_id_1 439 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 CZ _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ARG _pdbx_validate_rmsd_bond.auth_seq_id_2 439 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 4.438 _pdbx_validate_rmsd_bond.bond_target_value 1.326 _pdbx_validate_rmsd_bond.bond_deviation 3.112 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 423 ? B CZ A ARG 423 ? B NH1 A ARG 423 ? B 124.25 120.30 3.95 0.50 N 2 1 CD A ARG 439 ? B NE A ARG 439 ? B CZ A ARG 439 ? ? 16.31 123.60 -107.29 1.40 N 3 1 NE A ARG 439 ? B CZ A ARG 439 ? ? NH1 A ARG 439 ? ? 157.92 120.30 37.62 0.50 N 4 1 NE A ARG 439 ? B CZ A ARG 439 ? ? NH2 A ARG 439 ? ? 82.21 120.30 -38.09 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 445 ? ? -117.15 79.28 2 1 THR A 488 ? A -123.51 -86.11 3 1 THR A 488 ? B -134.04 -86.44 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER -1 ? OG ? A SER 1 OG 2 1 Y 1 A GLN 362 ? CG ? A GLN 4 CG 3 1 Y 1 A GLN 362 ? CD ? A GLN 4 CD 4 1 Y 1 A GLN 362 ? OE1 ? A GLN 4 OE1 5 1 Y 1 A GLN 362 ? NE2 ? A GLN 4 NE2 6 1 Y 1 A LYS 378 ? NZ ? A LYS 20 NZ 7 1 Y 1 A LYS 381 ? CD ? A LYS 23 CD 8 1 Y 1 A LYS 381 ? CE ? A LYS 23 CE 9 1 Y 1 A LYS 381 ? NZ ? A LYS 23 NZ 10 1 Y 1 A ASN 400 ? CG ? A ASN 42 CG 11 1 Y 1 A ASN 400 ? OD1 ? A ASN 42 OD1 12 1 Y 1 A ASN 400 ? ND2 ? A ASN 42 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 364 ? A SER 6 2 1 Y 1 A GLY 365 ? A GLY 7 3 1 Y 1 A PRO 366 ? A PRO 8 4 1 Y 1 A MET 367 ? A MET 9 5 1 Y 1 A ASP 368 ? A ASP 10 6 1 Y 1 A VAL 369 ? A VAL 11 7 1 Y 1 A THR 370 ? A THR 12 8 1 Y 1 A VAL 497 ? A VAL 139 9 1 Y 1 A ARG 498 ? A ARG 140 10 1 Y 1 A SER 499 ? A SER 141 11 1 Y 1 P ASN 564 ? B ASN 1 12 1 Y 1 P GLY 565 ? B GLY 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 PTR N N N N 300 PTR CA C N S 301 PTR C C N N 302 PTR O O N N 303 PTR OXT O N N 304 PTR CB C N N 305 PTR CG C Y N 306 PTR CD1 C Y N 307 PTR CD2 C Y N 308 PTR CE1 C Y N 309 PTR CE2 C Y N 310 PTR CZ C Y N 311 PTR OH O N N 312 PTR P P N N 313 PTR O1P O N N 314 PTR O2P O N N 315 PTR O3P O N N 316 PTR H H N N 317 PTR H2 H N N 318 PTR HA H N N 319 PTR HXT H N N 320 PTR HB2 H N N 321 PTR HB3 H N N 322 PTR HD1 H N N 323 PTR HD2 H N N 324 PTR HE1 H N N 325 PTR HE2 H N N 326 PTR HO2P H N N 327 PTR HO3P H N N 328 SER N N N N 329 SER CA C N S 330 SER C C N N 331 SER O O N N 332 SER CB C N N 333 SER OG O N N 334 SER OXT O N N 335 SER H H N N 336 SER H2 H N N 337 SER HA H N N 338 SER HB2 H N N 339 SER HB3 H N N 340 SER HG H N N 341 SER HXT H N N 342 THR N N N N 343 THR CA C N S 344 THR C C N N 345 THR O O N N 346 THR CB C N R 347 THR OG1 O N N 348 THR CG2 C N N 349 THR OXT O N N 350 THR H H N N 351 THR H2 H N N 352 THR HA H N N 353 THR HB H N N 354 THR HG1 H N N 355 THR HG21 H N N 356 THR HG22 H N N 357 THR HG23 H N N 358 THR HXT H N N 359 TRP N N N N 360 TRP CA C N S 361 TRP C C N N 362 TRP O O N N 363 TRP CB C N N 364 TRP CG C Y N 365 TRP CD1 C Y N 366 TRP CD2 C Y N 367 TRP NE1 N Y N 368 TRP CE2 C Y N 369 TRP CE3 C Y N 370 TRP CZ2 C Y N 371 TRP CZ3 C Y N 372 TRP CH2 C Y N 373 TRP OXT O N N 374 TRP H H N N 375 TRP H2 H N N 376 TRP HA H N N 377 TRP HB2 H N N 378 TRP HB3 H N N 379 TRP HD1 H N N 380 TRP HE1 H N N 381 TRP HE3 H N N 382 TRP HZ2 H N N 383 TRP HZ3 H N N 384 TRP HH2 H N N 385 TRP HXT H N N 386 TYR N N N N 387 TYR CA C N S 388 TYR C C N N 389 TYR O O N N 390 TYR CB C N N 391 TYR CG C Y N 392 TYR CD1 C Y N 393 TYR CD2 C Y N 394 TYR CE1 C Y N 395 TYR CE2 C Y N 396 TYR CZ C Y N 397 TYR OH O N N 398 TYR OXT O N N 399 TYR H H N N 400 TYR H2 H N N 401 TYR HA H N N 402 TYR HB2 H N N 403 TYR HB3 H N N 404 TYR HD1 H N N 405 TYR HD2 H N N 406 TYR HE1 H N N 407 TYR HE2 H N N 408 TYR HH H N N 409 TYR HXT H N N 410 VAL N N N N 411 VAL CA C N S 412 VAL C C N N 413 VAL O O N N 414 VAL CB C N N 415 VAL CG1 C N N 416 VAL CG2 C N N 417 VAL OXT O N N 418 VAL H H N N 419 VAL H2 H N N 420 VAL HA H N N 421 VAL HB H N N 422 VAL HG11 H N N 423 VAL HG12 H N N 424 VAL HG13 H N N 425 VAL HG21 H N N 426 VAL HG22 H N N 427 VAL HG23 H N N 428 VAL HXT H N N 429 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 PTR N CA sing N N 286 PTR N H sing N N 287 PTR N H2 sing N N 288 PTR CA C sing N N 289 PTR CA CB sing N N 290 PTR CA HA sing N N 291 PTR C O doub N N 292 PTR C OXT sing N N 293 PTR OXT HXT sing N N 294 PTR CB CG sing N N 295 PTR CB HB2 sing N N 296 PTR CB HB3 sing N N 297 PTR CG CD1 doub Y N 298 PTR CG CD2 sing Y N 299 PTR CD1 CE1 sing Y N 300 PTR CD1 HD1 sing N N 301 PTR CD2 CE2 doub Y N 302 PTR CD2 HD2 sing N N 303 PTR CE1 CZ doub Y N 304 PTR CE1 HE1 sing N N 305 PTR CE2 CZ sing Y N 306 PTR CE2 HE2 sing N N 307 PTR CZ OH sing N N 308 PTR OH P sing N N 309 PTR P O1P doub N N 310 PTR P O2P sing N N 311 PTR P O3P sing N N 312 PTR O2P HO2P sing N N 313 PTR O3P HO3P sing N N 314 SER N CA sing N N 315 SER N H sing N N 316 SER N H2 sing N N 317 SER CA C sing N N 318 SER CA CB sing N N 319 SER CA HA sing N N 320 SER C O doub N N 321 SER C OXT sing N N 322 SER CB OG sing N N 323 SER CB HB2 sing N N 324 SER CB HB3 sing N N 325 SER OG HG sing N N 326 SER OXT HXT sing N N 327 THR N CA sing N N 328 THR N H sing N N 329 THR N H2 sing N N 330 THR CA C sing N N 331 THR CA CB sing N N 332 THR CA HA sing N N 333 THR C O doub N N 334 THR C OXT sing N N 335 THR CB OG1 sing N N 336 THR CB CG2 sing N N 337 THR CB HB sing N N 338 THR OG1 HG1 sing N N 339 THR CG2 HG21 sing N N 340 THR CG2 HG22 sing N N 341 THR CG2 HG23 sing N N 342 THR OXT HXT sing N N 343 TRP N CA sing N N 344 TRP N H sing N N 345 TRP N H2 sing N N 346 TRP CA C sing N N 347 TRP CA CB sing N N 348 TRP CA HA sing N N 349 TRP C O doub N N 350 TRP C OXT sing N N 351 TRP CB CG sing N N 352 TRP CB HB2 sing N N 353 TRP CB HB3 sing N N 354 TRP CG CD1 doub Y N 355 TRP CG CD2 sing Y N 356 TRP CD1 NE1 sing Y N 357 TRP CD1 HD1 sing N N 358 TRP CD2 CE2 doub Y N 359 TRP CD2 CE3 sing Y N 360 TRP NE1 CE2 sing Y N 361 TRP NE1 HE1 sing N N 362 TRP CE2 CZ2 sing Y N 363 TRP CE3 CZ3 doub Y N 364 TRP CE3 HE3 sing N N 365 TRP CZ2 CH2 doub Y N 366 TRP CZ2 HZ2 sing N N 367 TRP CZ3 CH2 sing Y N 368 TRP CZ3 HZ3 sing N N 369 TRP CH2 HH2 sing N N 370 TRP OXT HXT sing N N 371 TYR N CA sing N N 372 TYR N H sing N N 373 TYR N H2 sing N N 374 TYR CA C sing N N 375 TYR CA CB sing N N 376 TYR CA HA sing N N 377 TYR C O doub N N 378 TYR C OXT sing N N 379 TYR CB CG sing N N 380 TYR CB HB2 sing N N 381 TYR CB HB3 sing N N 382 TYR CG CD1 doub Y N 383 TYR CG CD2 sing Y N 384 TYR CD1 CE1 sing Y N 385 TYR CD1 HD1 sing N N 386 TYR CD2 CE2 doub Y N 387 TYR CD2 HD2 sing N N 388 TYR CE1 CZ doub Y N 389 TYR CE1 HE1 sing N N 390 TYR CE2 CZ sing Y N 391 TYR CE2 HE2 sing N N 392 TYR CZ OH sing N N 393 TYR OH HH sing N N 394 TYR OXT HXT sing N N 395 VAL N CA sing N N 396 VAL N H sing N N 397 VAL N H2 sing N N 398 VAL CA C sing N N 399 VAL CA CB sing N N 400 VAL CA HA sing N N 401 VAL C O doub N N 402 VAL C OXT sing N N 403 VAL CB CG1 sing N N 404 VAL CB CG2 sing N N 405 VAL CB HB sing N N 406 VAL CG1 HG11 sing N N 407 VAL CG1 HG12 sing N N 408 VAL CG1 HG13 sing N N 409 VAL CG2 HG21 sing N N 410 VAL CG2 HG22 sing N N 411 VAL CG2 HG23 sing N N 412 VAL OXT HXT sing N N 413 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1,2-ETHANEDIOL EDO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2IZV _pdbx_initial_refinement_model.details 'PDB ENTRY 2IZV' #