HEADER TRANSCRIPTION 06-DEC-07 2VJ3 TITLE HUMAN NOTCH-1 EGFS 11-13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EGFS 11-13, RESIDUES 411-526; COMPND 5 SYNONYM: NOTCH 1, HN1, TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN-1, COMPND 6 NOTCH-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TRANSCRIPTION, METAL-BINDING, TRANSMEMBRANE, DEVELOPMENTAL PROTEIN, KEYWDS 2 NOTCH SIGNALING PATHWAY, DIFFERENTIATION, PHOSPHORYLATION, EGF-LIKE KEYWDS 3 DOMAIN, TRANSCRIPTION REGULATION, RECEPTOR, ACTIVATOR, ANK REPEAT, KEYWDS 4 SIGNALLING, POLYMORPHISM, GLYCOPROTEIN, EXTRACELLULAR, EGF, NOTCH, KEYWDS 5 JAGGED, NUCLEUS, CALCIUM, MEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR S.JOHNSON,J.CORDLE,J.Z.TAY,P.ROVERSI,S.M.LEA REVDAT 5 13-DEC-23 2VJ3 1 REMARK LINK REVDAT 4 05-JUL-17 2VJ3 1 REMARK REVDAT 3 25-AUG-10 2VJ3 1 JRNL REMARK FORMUL REVDAT 2 24-FEB-09 2VJ3 1 VERSN REVDAT 1 29-JUL-08 2VJ3 0 JRNL AUTH J.CORDLE,S.JOHNSON,J.Z.TAY,P.ROVERSI,M.B.WILKIN, JRNL AUTH 2 B.H.DE MADRID,H.SHIMIZU,S.JENSEN,P.WHITEMAN,B.JIN, JRNL AUTH 3 C.REDFIELD,M.BARON,S.M.LEA,P.A.HANDFORD JRNL TITL A CONSERVED FACE OF THE JAGGED/SERRATE DSL DOMAIN IS JRNL TITL 2 INVOLVED IN NOTCH TRANS-ACTIVATION AND CIS-INHIBITION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 849 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18660822 JRNL DOI 10.1038/NSMB.1457 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5.6.1 REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 4080 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 190 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2390 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2390 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 190 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 897 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 52.500 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.005 ; 2.000 ; 922 REMARK 3 BOND ANGLES (DEGREES) : 0.680 ; 2.000 ; 1250 REMARK 3 TORSION ANGLES (DEGREES) : 13.600; 0.000 ; 180 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.001 ; 2.000 ; 35 REMARK 3 GENERAL PLANES (A) : 0.020 ; 5.000 ; 132 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 1.066 ; 20.000; 922 REMARK 3 NON-BONDED CONTACTS (A) : 0.086 ; 5.000 ; 4 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BABINET SCALING REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 124.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BUSTER-TNT-GELLY 2.1.1 E. BLANC, P. REMARK 3 ROVERSI, C. VONRHEIN, C. FLENSBURG, S. M. LEA AND G.BRICOGNE REMARK 4 REMARK 4 2VJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 24.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EDM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG-5000-MME, 100MM SODIUM REMARK 280 ACETATE, PH5.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.90000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 187.80000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 187.80000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1534 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 409 REMARK 465 ALA A 410 REMARK 465 HIS A 531 REMARK 465 ILE A 532 REMARK 465 LEU A 533 REMARK 465 ASP A 534 REMARK 465 ALA A 535 REMARK 465 GLN A 536 REMARK 465 LYS A 537 REMARK 465 MET A 538 REMARK 465 VAL A 539 REMARK 465 TRP A 540 REMARK 465 ASN A 541 REMARK 465 HIS A 542 REMARK 465 ARG A 543 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 481 O HOH A 2015 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 435 -148.07 -148.70 REMARK 500 LYS A 508 -157.46 -127.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1532 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 412 OD1 REMARK 620 2 VAL A 413 O 83.9 REMARK 620 3 GLU A 415 OE1 135.6 68.3 REMARK 620 4 ASN A 431 OD1 121.7 95.1 95.6 REMARK 620 5 THR A 432 O 74.8 146.7 143.4 75.5 REMARK 620 6 SER A 435 O 123.9 143.2 74.9 89.5 69.7 REMARK 620 7 HOH A2002 O 53.3 72.2 84.7 166.3 112.1 103.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1531 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 452 OD1 REMARK 620 2 VAL A 453 O 93.9 REMARK 620 3 GLU A 455 OE1 143.7 67.9 REMARK 620 4 ASP A 469 OD1 135.4 80.9 74.7 REMARK 620 5 GLN A 470 O 114.2 137.2 70.6 97.9 REMARK 620 6 HOH A2007 O 60.6 81.9 85.2 157.3 84.8 REMARK 620 7 HOH A2009 O 65.5 146.8 143.3 95.6 76.0 106.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1533 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 490 OD1 REMARK 620 2 THR A 491 O 99.3 REMARK 620 3 GLU A 493 OE1 157.2 73.9 REMARK 620 4 ASP A 507 OD1 131.8 76.6 68.9 REMARK 620 5 ASP A 507 OD2 88.5 88.6 112.7 43.9 REMARK 620 6 LYS A 508 O 99.9 159.6 90.5 85.7 85.3 REMARK 620 7 HOH A2015 O 73.5 84.3 84.0 150.2 159.2 107.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1534 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 511 OE2 REMARK 620 2 GLU A 511 OE2 124.1 REMARK 620 3 HIS A 523 NE2 101.2 97.3 REMARK 620 4 HIS A 523 NE2 99.3 104.9 133.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1532 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1535 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1536 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1537 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1538 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TOZ RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE HUMAN NOTCH-1 LIGAND BINDING REGION REMARK 900 RELATED ID: 2F8Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NOTCH1 ANKYRIN REPEATS TO REMARK 900 1.55ARESOLUTION. REMARK 900 RELATED ID: 1YYH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN NOTCH 1 ANKYRIN DOMAIN REMARK 900 RELATED ID: 1PB5 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF A PROTOTYPE LNR MODULE FROM HUMAN NOTCH1 REMARK 900 RELATED ID: 2F8X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACTIVATED NOTCH, CSL AND MAML ON HES-1PROMOTER REMARK 900 DNA SEQUENCE REMARK 999 REMARK 999 SEQUENCE REMARK 999 M477I IS A PUBLISHED CONFLICT. THE DETAILS OF WHICH CAN BE REMARK 999 FOUND IN HAMBLETON ET AL (2004) STRUCTURE. 12:2173-83 DBREF 2VJ3 A 409 410 PDB 2VJ3 2VJ3 409 410 DBREF 2VJ3 A 411 526 UNP P46531 NOTC1_HUMAN 411 526 DBREF 2VJ3 A 527 543 PDB 2VJ3 2VJ3 527 543 SEQADV 2VJ3 ILE A 477 UNP P46531 MET 477 CONFLICT SEQRES 1 A 135 SER ALA GLN ASP VAL ASP GLU CYS SER LEU GLY ALA ASN SEQRES 2 A 135 PRO CYS GLU HIS ALA GLY LYS CYS ILE ASN THR LEU GLY SEQRES 3 A 135 SER PHE GLU CYS GLN CYS LEU GLN GLY TYR THR GLY PRO SEQRES 4 A 135 ARG CYS GLU ILE ASP VAL ASN GLU CYS VAL SER ASN PRO SEQRES 5 A 135 CYS GLN ASN ASP ALA THR CYS LEU ASP GLN ILE GLY GLU SEQRES 6 A 135 PHE GLN CYS ILE CYS MET PRO GLY TYR GLU GLY VAL HIS SEQRES 7 A 135 CYS GLU VAL ASN THR ASP GLU CYS ALA SER SER PRO CYS SEQRES 8 A 135 LEU HIS ASN GLY ARG CYS LEU ASP LYS ILE ASN GLU PHE SEQRES 9 A 135 GLN CYS GLU CYS PRO THR GLY PHE THR GLY HIS LEU CYS SEQRES 10 A 135 GLN VAL ASP LEU HIS HIS ILE LEU ASP ALA GLN LYS MET SEQRES 11 A 135 VAL TRP ASN HIS ARG HET CA A1531 1 HET CA A1532 1 HET CA A1533 1 HET CA A1534 1 HET NA A1535 1 HET NA A1536 1 HET CL A1537 1 HET CL A1538 1 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CA 4(CA 2+) FORMUL 6 NA 2(NA 1+) FORMUL 8 CL 2(CL 1-) FORMUL 10 HOH *23(H2 O) SHEET 1 AA 2 LYS A 428 ASN A 431 0 SHEET 2 AA 2 PHE A 436 GLN A 439 -1 O GLU A 437 N ILE A 430 SHEET 1 AB 2 TYR A 444 THR A 445 0 SHEET 2 AB 2 ILE A 451 ASP A 452 -1 O ILE A 451 N THR A 445 SHEET 1 AC 2 THR A 466 ASP A 469 0 SHEET 2 AC 2 PHE A 474 ILE A 477 -1 O GLN A 475 N LEU A 468 SHEET 1 AD 2 TYR A 482 GLU A 483 0 SHEET 2 AD 2 VAL A 489 ASN A 490 -1 O VAL A 489 N GLU A 483 SHEET 1 AE 2 ARG A 504 ASP A 507 0 SHEET 2 AE 2 PHE A 512 GLU A 515 -1 O GLN A 513 N LEU A 506 SHEET 1 AF 2 PHE A 520 THR A 521 0 SHEET 2 AF 2 VAL A 527 ASP A 528 -1 O VAL A 527 N THR A 521 SSBOND 1 CYS A 416 CYS A 429 1555 1555 2.03 SSBOND 2 CYS A 423 CYS A 438 1555 1555 2.03 SSBOND 3 CYS A 440 CYS A 449 1555 1555 2.03 SSBOND 4 CYS A 456 CYS A 467 1555 1555 2.02 SSBOND 5 CYS A 461 CYS A 476 1555 1555 2.03 SSBOND 6 CYS A 478 CYS A 487 1555 1555 2.03 SSBOND 7 CYS A 494 CYS A 505 1555 1555 2.03 SSBOND 8 CYS A 499 CYS A 514 1555 1555 2.03 SSBOND 9 CYS A 516 CYS A 525 1555 1555 2.03 LINK OD1 ASP A 412 CA CA A1532 1555 1555 2.82 LINK O VAL A 413 CA CA A1532 1555 1555 2.59 LINK OE1 GLU A 415 CA CA A1532 1555 1555 2.56 LINK OD1 ASN A 431 CA CA A1532 1555 1555 2.44 LINK O THR A 432 CA CA A1532 1555 1555 2.60 LINK O SER A 435 CA CA A1532 1555 1555 2.40 LINK OD1 ASP A 452 CA CA A1531 1555 1555 2.95 LINK O VAL A 453 CA CA A1531 1555 1555 2.33 LINK OE1 GLU A 455 CA CA A1531 1555 1555 2.64 LINK OD1 ASP A 469 CA CA A1531 1555 1555 2.68 LINK O GLN A 470 CA CA A1531 1555 1555 2.40 LINK OD1 ASN A 490 CA CA A1533 1555 1555 2.55 LINK O THR A 491 CA CA A1533 1555 1555 2.23 LINK OE1 GLU A 493 CA CA A1533 1555 1555 2.59 LINK OD1 ASP A 507 CA CA A1533 1555 1555 2.79 LINK OD2 ASP A 507 CA CA A1533 1555 1555 3.05 LINK O LYS A 508 CA CA A1533 1555 1555 2.18 LINK OE2 GLU A 511 CA CA A1534 5554 1555 2.37 LINK OE2 GLU A 511 CA CA A1534 1555 1555 2.34 LINK NE2 HIS A 523 CA CA A1534 1555 1555 2.53 LINK NE2 HIS A 523 CA CA A1534 5554 1555 2.44 LINK CA CA A1531 O HOH A2007 1555 1555 2.40 LINK CA CA A1531 O HOH A2009 1555 1555 2.43 LINK CA CA A1532 O HOH A2002 1555 1555 2.53 LINK CA CA A1533 O HOH A2015 1555 1555 2.51 CISPEP 1 THR A 518 GLY A 519 0 -2.42 CISPEP 2 THR A 521 GLY A 522 0 -3.77 SITE 1 AC1 7 ASP A 452 VAL A 453 GLU A 455 ASP A 469 SITE 2 AC1 7 GLN A 470 HOH A2007 HOH A2009 SITE 1 AC2 7 ASP A 412 VAL A 413 GLU A 415 ASN A 431 SITE 2 AC2 7 THR A 432 SER A 435 HOH A2002 SITE 1 AC3 6 ASN A 490 THR A 491 GLU A 493 ASP A 507 SITE 2 AC3 6 LYS A 508 HOH A2015 SITE 1 AC4 2 GLU A 511 HIS A 523 SITE 1 AC5 4 LEU A 524 CYS A 525 GLN A 526 CL A1537 SITE 1 AC6 2 GLU A 483 ASP A 528 SITE 1 AC7 3 GLU A 493 ASN A 510 NA A1535 SITE 1 AC8 3 GLN A 475 CYS A 476 VAL A 485 CRYST1 28.000 28.000 281.700 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035733 0.020630 0.000000 0.00000 SCALE2 0.000000 0.041260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003549 0.00000