HEADER PHOTOSYNTHESIS 10-DEC-07 2VJH TITLE THE STRUCTURE OF PHYCOERYTHRIN FROM GLOEOBACTER VIOLACEUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYCOERYTHRIN ALPHA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PHYCOERYTHRIN BETA SUBUNIT; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLOEOBACTER VIOLACEUS; SOURCE 3 ORGANISM_TAXID: 33072; SOURCE 4 STRAIN: PCC7421; SOURCE 5 OTHER_DETAILS: PASTEUR CULTURE COLLECTION; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: GLOEOBACTER VIOLACEUS; SOURCE 8 ORGANISM_TAXID: 33072; SOURCE 9 STRAIN: PCC7421; SOURCE 10 OTHER_DETAILS: PASTEUR CULTURE COLLECTION KEYWDS PHOTOSYNTHESIS, LIGHT-HARVESTING EXPDTA X-RAY DIFFRACTION AUTHOR J.W.MURRAY,S.BENSON,J.NIELD,J.BARBER REVDAT 4 13-DEC-23 2VJH 1 LINK REVDAT 3 13-JUL-11 2VJH 1 VERSN REVDAT 2 24-FEB-09 2VJH 1 VERSN REVDAT 1 25-MAR-08 2VJH 0 JRNL AUTH J.W.MURRAY,S.BENSON,J.NIELD,J.BARBER JRNL TITL THE STRUCTURES OF THE PHYCOBILIPROTEINS OF GLOEOBACTER JRNL TITL 2 VIOLACEUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3239 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1670 REMARK 3 BIN FREE R VALUE SET COUNT : 235 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 430 REMARK 3 SOLVENT ATOMS : 632 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.716 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5598 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3648 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7610 ; 2.328 ; 2.063 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8848 ; 1.183 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 678 ; 5.058 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;36.594 ;23.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 834 ;12.998 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;14.039 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 826 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6324 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1158 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1215 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3897 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2677 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2593 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 469 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.112 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4356 ; 0.929 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5346 ; 1.056 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2804 ; 1.984 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2264 ; 2.800 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 2000 5 REMARK 3 1 C 1 C 2000 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 964 ; 0.08 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1262 ; 0.38 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 964 ; 0.38 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1262 ; 1.17 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 2000 5 REMARK 3 1 D 1 D 2000 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 1043 ; 0.08 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 B (A): 1297 ; 0.25 ; 5.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 1043 ; 0.38 ; 2.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 1297 ; 0.68 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 164 REMARK 3 RESIDUE RANGE : A 1082 A 1139 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4010 19.4830 21.8060 REMARK 3 T TENSOR REMARK 3 T11: -0.1678 T22: -0.1536 REMARK 3 T33: -0.1351 T12: 0.0333 REMARK 3 T13: 0.0203 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.3683 L22: 0.6378 REMARK 3 L33: 0.4632 L12: -0.0839 REMARK 3 L13: -0.1848 L23: 0.0635 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0013 S13: 0.0173 REMARK 3 S21: 0.0135 S22: 0.0177 S23: 0.0133 REMARK 3 S31: 0.0484 S32: 0.0083 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 177 REMARK 3 RESIDUE RANGE : B 1050 B 1158 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7160 49.9910 39.5180 REMARK 3 T TENSOR REMARK 3 T11: -0.1084 T22: -0.1053 REMARK 3 T33: -0.1018 T12: -0.0029 REMARK 3 T13: 0.0260 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.2805 L22: 1.2992 REMARK 3 L33: 0.5628 L12: -0.2798 REMARK 3 L13: -0.1564 L23: 0.7246 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.0388 S13: -0.0152 REMARK 3 S21: -0.0413 S22: 0.0373 S23: -0.1307 REMARK 3 S31: -0.0439 S32: 0.1208 S33: -0.0737 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 164 REMARK 3 RESIDUE RANGE : C 1082 C 1139 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8740 39.6660 61.8290 REMARK 3 T TENSOR REMARK 3 T11: -0.0493 T22: -0.0605 REMARK 3 T33: -0.1080 T12: 0.0309 REMARK 3 T13: 0.0043 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.3187 L22: 1.1223 REMARK 3 L33: 1.1122 L12: 0.0413 REMARK 3 L13: -0.1131 L23: 0.6931 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.0994 S13: -0.0192 REMARK 3 S21: 0.2104 S22: 0.0419 S23: -0.0691 REMARK 3 S31: 0.0960 S32: 0.1297 S33: -0.0373 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 177 REMARK 3 RESIDUE RANGE : D 1050 D 1158 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1650 14.1240 40.9710 REMARK 3 T TENSOR REMARK 3 T11: -0.0515 T22: -0.0853 REMARK 3 T33: -0.0724 T12: 0.0173 REMARK 3 T13: 0.0440 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 0.5878 L22: 0.7949 REMARK 3 L33: 0.8992 L12: 0.1598 REMARK 3 L13: 0.3114 L23: 0.2155 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: -0.1053 S13: -0.0425 REMARK 3 S21: 0.0850 S22: 0.0192 S23: 0.0719 REMARK 3 S31: 0.0854 S32: -0.0853 S33: 0.0032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64149 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 44.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.06 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.23 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1B8D REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 8K, 0.33 M SODIUM REMARK 280 CACODYLATE, 0.67 M MAGNESIUM CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 77.91450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.91450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.91450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.91450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 77.91450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.91450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 77.91450 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 77.91450 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 77.91450 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 77.91450 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 77.91450 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 77.91450 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 77.91450 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 77.91450 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 77.91450 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 77.91450 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 77.91450 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 77.91450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 44240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 88630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -263.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -77.91450 REMARK 350 BIOMT2 2 0.000000 0.000000 -1.000000 77.91450 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 77.91450 REMARK 350 BIOMT3 3 0.000000 -1.000000 0.000000 77.91450 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 75 144.31 83.04 REMARK 500 CYS B 109 -57.08 -126.58 REMARK 500 THR D 75 148.82 79.90 REMARK 500 CYS D 109 -57.45 -129.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB A1082 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB A1139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PUB B1050 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB B1082 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB B1158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB C1082 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB C1139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PUB D1050 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB D1082 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB D1158 DBREF 2VJH A 1 164 UNP Q7NLD7 Q7NLD7_GLOVI 1 164 DBREF 2VJH B 1 177 UNP Q7NLD6 Q7NLD6_GLOVI 1 177 DBREF 2VJH C 1 164 UNP Q7NLD7 Q7NLD7_GLOVI 1 164 DBREF 2VJH D 1 177 UNP Q7NLD6 Q7NLD6_GLOVI 1 177 SEQRES 1 A 164 MET LYS SER VAL VAL THR THR VAL LEU ALA ALA ALA ASP SEQRES 2 A 164 ALA ALA GLY ARG PHE PRO SER GLY SER ASP LEU GLU SER SEQRES 3 A 164 VAL GLN GLY ASN ILE GLN ARG SER ALA ALA ARG LEU GLU SEQRES 4 A 164 ALA ALA GLU LYS LEU ALA ALA GLY HIS ALA ALA VAL VAL SEQRES 5 A 164 LYS GLU ALA GLY ASP VAL VAL PHE LYS LYS TYR PRO TYR SEQRES 6 A 164 LEU LYS THR ALA GLY GLU ALA GLY ASP SER ALA GLU LYS SEQRES 7 A 164 VAL ALA LYS CYS TYR ARG ASP ILE ASP HIS TYR MET ARG SEQRES 8 A 164 LEU ILE ASN TYR CYS LEU VAL VAL GLY GLY THR GLY PRO SEQRES 9 A 164 LEU ASP GLU TRP GLY ILE SER GLY ALA ARG GLU VAL TYR SEQRES 10 A 164 ARG ALA LEU ASN LEU PRO THR ALA ALA TYR VAL ALA ALA SEQRES 11 A 164 PHE GLN TYR THR ARG ASP ARG ALA CYS ALA PRO ARG ASP SEQRES 12 A 164 MET GLY PRO GLN ALA LEU THR GLU PHE ARG SER TYR LEU SEQRES 13 A 164 ASP TYR VAL ILE ASN ALA LEU SER SEQRES 1 B 177 MET LEU ASP ALA PHE SER LYS ALA VAL VAL SER ALA ASP SEQRES 2 B 177 GLN LYS THR GLY TYR ILE GLY GLY ALA GLU LEU ALA ALA SEQRES 3 B 177 LEU LYS THR TYR ILE ALA ASN GLY ASN LYS ARG LEU ASP SEQRES 4 B 177 ALA VAL ASN ALA ILE THR SER ASN ALA SER CYS ILE VAL SEQRES 5 B 177 SER ASP ALA VAL SER GLY MET ILE CYS GLU ASN PRO GLY SEQRES 6 B 177 LEU ILE SER ALA GLY GLY MEN CYS TYR THR ASN ARG ARG SEQRES 7 B 177 MET ALA ALA CYS LEU ARG ASP GLY GLU ILE VAL LEU ARG SEQRES 8 B 177 TYR VAL THR TYR ALA LEU LEU ALA GLY ASP ALA SER VAL SEQRES 9 B 177 LEU GLU ASP ARG CYS LEU ASN GLY LEU LYS GLU THR TYR SEQRES 10 B 177 MET ALA LEU GLY VAL PRO ILE PRO SER ALA ILE ARG ALA SEQRES 11 B 177 VAL SER ILE MET LYS ALA SER ALA VAL ALA PHE ILE ASN SEQRES 12 B 177 ASN THR ALA SER LYS ARG LYS ILE GLU THR PRO GLN GLY SEQRES 13 B 177 ASP CYS ALA ALA LEU ALA SER GLU ALA GLY SER TYR PHE SEQRES 14 B 177 ASP MET ALA ALA SER ALA LEU ARG SEQRES 1 C 164 MET LYS SER VAL VAL THR THR VAL LEU ALA ALA ALA ASP SEQRES 2 C 164 ALA ALA GLY ARG PHE PRO SER GLY SER ASP LEU GLU SER SEQRES 3 C 164 VAL GLN GLY ASN ILE GLN ARG SER ALA ALA ARG LEU GLU SEQRES 4 C 164 ALA ALA GLU LYS LEU ALA ALA GLY HIS ALA ALA VAL VAL SEQRES 5 C 164 LYS GLU ALA GLY ASP VAL VAL PHE LYS LYS TYR PRO TYR SEQRES 6 C 164 LEU LYS THR ALA GLY GLU ALA GLY ASP SER ALA GLU LYS SEQRES 7 C 164 VAL ALA LYS CYS TYR ARG ASP ILE ASP HIS TYR MET ARG SEQRES 8 C 164 LEU ILE ASN TYR CYS LEU VAL VAL GLY GLY THR GLY PRO SEQRES 9 C 164 LEU ASP GLU TRP GLY ILE SER GLY ALA ARG GLU VAL TYR SEQRES 10 C 164 ARG ALA LEU ASN LEU PRO THR ALA ALA TYR VAL ALA ALA SEQRES 11 C 164 PHE GLN TYR THR ARG ASP ARG ALA CYS ALA PRO ARG ASP SEQRES 12 C 164 MET GLY PRO GLN ALA LEU THR GLU PHE ARG SER TYR LEU SEQRES 13 C 164 ASP TYR VAL ILE ASN ALA LEU SER SEQRES 1 D 177 MET LEU ASP ALA PHE SER LYS ALA VAL VAL SER ALA ASP SEQRES 2 D 177 GLN LYS THR GLY TYR ILE GLY GLY ALA GLU LEU ALA ALA SEQRES 3 D 177 LEU LYS THR TYR ILE ALA ASN GLY ASN LYS ARG LEU ASP SEQRES 4 D 177 ALA VAL ASN ALA ILE THR SER ASN ALA SER CYS ILE VAL SEQRES 5 D 177 SER ASP ALA VAL SER GLY MET ILE CYS GLU ASN PRO GLY SEQRES 6 D 177 LEU ILE SER ALA GLY GLY MEN CYS TYR THR ASN ARG ARG SEQRES 7 D 177 MET ALA ALA CYS LEU ARG ASP GLY GLU ILE VAL LEU ARG SEQRES 8 D 177 TYR VAL THR TYR ALA LEU LEU ALA GLY ASP ALA SER VAL SEQRES 9 D 177 LEU GLU ASP ARG CYS LEU ASN GLY LEU LYS GLU THR TYR SEQRES 10 D 177 MET ALA LEU GLY VAL PRO ILE PRO SER ALA ILE ARG ALA SEQRES 11 D 177 VAL SER ILE MET LYS ALA SER ALA VAL ALA PHE ILE ASN SEQRES 12 D 177 ASN THR ALA SER LYS ARG LYS ILE GLU THR PRO GLN GLY SEQRES 13 D 177 ASP CYS ALA ALA LEU ALA SER GLU ALA GLY SER TYR PHE SEQRES 14 D 177 ASP MET ALA ALA SER ALA LEU ARG MODRES 2VJH MEN B 72 ASN N-METHYL ASPARAGINE MODRES 2VJH MEN D 72 ASN N-METHYL ASPARAGINE HET MEN B 72 9 HET MEN D 72 9 HET PEB A1082 43 HET PEB A1139 43 HET PUB B1050 43 HET PEB B1082 43 HET PEB B1158 43 HET PEB C1082 43 HET PEB C1139 43 HET PUB D1050 43 HET PEB D1082 43 HET PEB D1158 43 HETNAM MEN N-METHYL ASPARAGINE HETNAM PEB PHYCOERYTHROBILIN HETNAM PUB PHYCOUROBILIN FORMUL 2 MEN 2(C5 H10 N2 O3) FORMUL 5 PEB 8(C33 H40 N4 O6) FORMUL 7 PUB 2(C33 H42 N4 O6) FORMUL 15 HOH *632(H2 O) HELIX 1 1 SER A 3 ALA A 15 1 13 HELIX 2 2 SER A 20 TYR A 63 1 44 HELIX 3 3 PRO A 64 THR A 68 5 5 HELIX 4 4 SER A 75 GLY A 100 1 26 HELIX 5 5 THR A 102 GLY A 109 1 8 HELIX 6 6 GLY A 112 LEU A 120 1 9 HELIX 7 7 PRO A 123 ALA A 138 1 16 HELIX 8 8 GLY A 145 LEU A 163 1 19 HELIX 9 9 ASP B 3 LYS B 15 1 13 HELIX 10 10 GLY B 20 ASN B 33 1 14 HELIX 11 11 ASN B 33 SER B 46 1 14 HELIX 12 12 ASN B 47 ASN B 63 1 17 HELIX 13 13 PRO B 64 SER B 68 5 5 HELIX 14 14 THR B 75 GLY B 100 1 26 HELIX 15 15 ALA B 102 CYS B 109 1 8 HELIX 16 16 GLY B 112 GLY B 121 1 10 HELIX 17 17 PRO B 123 ASN B 143 1 21 HELIX 18 18 CYS B 158 ARG B 177 1 20 HELIX 19 19 SER C 3 ALA C 15 1 13 HELIX 20 20 SER C 20 TYR C 63 1 44 HELIX 21 21 PRO C 64 THR C 68 5 5 HELIX 22 22 SER C 75 GLY C 100 1 26 HELIX 23 23 THR C 102 GLY C 109 1 8 HELIX 24 24 GLY C 112 LEU C 120 1 9 HELIX 25 25 PRO C 123 ALA C 138 1 16 HELIX 26 26 GLY C 145 LEU C 163 1 19 HELIX 27 27 ASP D 3 LYS D 15 1 13 HELIX 28 28 GLY D 20 ASN D 33 1 14 HELIX 29 29 ASN D 33 SER D 46 1 14 HELIX 30 30 ASN D 47 ASN D 63 1 17 HELIX 31 31 PRO D 64 SER D 68 5 5 HELIX 32 32 THR D 75 GLY D 100 1 26 HELIX 33 33 ALA D 102 CYS D 109 1 8 HELIX 34 34 GLY D 112 GLY D 121 1 10 HELIX 35 35 PRO D 123 ASN D 144 1 22 HELIX 36 36 CYS D 158 ARG D 177 1 20 LINK SG CYS A 82 CAA PEB A1082 1555 1555 1.67 LINK SG CYS A 139 CAA PEB A1139 1555 1555 1.67 LINK SG CYS B 50 CAA PUB B1050 1555 1555 1.69 LINK SG CYS B 61 CAD PUB B1050 1555 1555 1.66 LINK C GLY B 71 N MEN B 72 1555 1555 1.32 LINK C MEN B 72 N CYS B 73 1555 1555 1.34 LINK SG CYS B 82 CAA PEB B1082 1555 1555 1.68 LINK SG CYS B 158 CAA PEB B1158 1555 1555 1.67 LINK SG CYS C 82 CAA PEB C1082 1555 1555 1.65 LINK SG CYS C 139 CAA PEB C1139 1555 1555 1.65 LINK SG CYS D 50 CAA PUB D1050 1555 1555 1.69 LINK SG CYS D 61 CAD PUB D1050 1555 1555 1.66 LINK C GLY D 71 N MEN D 72 1555 1555 1.33 LINK C MEN D 72 N CYS D 73 1555 1555 1.33 LINK SG CYS D 82 CAA PEB D1082 1555 1555 1.68 LINK SG CYS D 158 CAA PEB D1158 1555 1555 1.67 CISPEP 1 ALA A 140 PRO A 141 0 -0.02 CISPEP 2 ALA C 140 PRO C 141 0 0.66 SITE 1 AC1 27 PHE A 60 ALA A 72 GLY A 73 LYS A 78 SITE 2 AC1 27 LYS A 81 CYS A 82 ARG A 84 ASP A 85 SITE 3 AC1 27 HIS A 88 TYR A 89 TRP A 108 LEU A 120 SITE 4 AC1 27 LEU A 122 ALA A 126 TYR A 127 HOH A2099 SITE 5 AC1 27 HOH A2117 HOH A2154 HOH A2155 HOH A2156 SITE 6 AC1 27 HOH A2157 HOH A2158 ILE B 67 TYR B 74 SITE 7 AC1 27 THR B 75 ASN B 76 MET B 79 SITE 1 AC2 24 LYS A 43 GLY A 47 ALA A 49 ALA A 50 SITE 2 AC2 24 VAL A 51 GLU A 54 TYR A 83 ARG A 84 SITE 3 AC2 24 ARG A 137 ALA A 138 CYS A 139 ARG A 142 SITE 4 AC2 24 ASP A 143 HOH A2053 HOH A2056 HOH A2135 SITE 5 AC2 24 HOH A2159 HOH A2160 HOH A2161 HOH A2162 SITE 6 AC2 24 HOH A2163 HOH A2164 HOH A2165 HOH A2166 SITE 1 AC3 20 CYS B 50 ASP B 54 GLY B 58 CYS B 61 SITE 2 AC3 20 GLU B 62 ARG B 129 ILE B 133 ALA B 136 SITE 3 AC3 20 SER B 137 THR B 145 ALA B 146 SER B 147 SITE 4 AC3 20 LYS B 148 HOH B2049 HOH B2148 HOH B2149 SITE 5 AC3 20 HOH B2150 HOH B2151 HOH B2152 HOH B2153 SITE 1 AC4 18 MET B 59 MEN B 72 CYS B 73 ARG B 77 SITE 2 AC4 18 ARG B 78 ALA B 81 CYS B 82 ARG B 84 SITE 3 AC4 18 ASP B 85 ILE B 88 ARG B 108 LEU B 113 SITE 4 AC4 18 LEU B 120 PRO B 123 ALA B 127 HOH B2155 SITE 5 AC4 18 HOH B2156 HOH B2157 SITE 1 AC5 23 GLU A 25 GLN A 28 ASN B 35 LYS B 36 SITE 2 AC5 23 LEU B 38 ASP B 39 ILE B 142 ASN B 144 SITE 3 AC5 23 THR B 153 PRO B 154 GLY B 156 CYS B 158 SITE 4 AC5 23 HOH B2158 HOH B2159 HOH B2160 HOH B2161 SITE 5 AC5 23 HOH B2162 HOH B2163 HOH B2164 HOH B2165 SITE 6 AC5 23 HOH B2166 ARG C 33 GLN C 147 SITE 1 AC6 26 PHE C 60 ALA C 72 GLY C 73 LYS C 78 SITE 2 AC6 26 LYS C 81 CYS C 82 ARG C 84 ASP C 85 SITE 3 AC6 26 HIS C 88 TYR C 89 TRP C 108 LEU C 120 SITE 4 AC6 26 LEU C 122 PRO C 123 ALA C 126 TYR C 127 SITE 5 AC6 26 HOH C2079 HOH C2140 HOH C2141 HOH C2142 SITE 6 AC6 26 HOH C2143 ILE D 67 THR D 75 ASN D 76 SITE 7 AC6 26 MET D 79 HOH D2060 SITE 1 AC7 15 LYS C 43 GLY C 47 ALA C 50 VAL C 51 SITE 2 AC7 15 GLU C 54 ARG C 137 ALA C 138 CYS C 139 SITE 3 AC7 15 ARG C 142 ASP C 143 MET C 144 HOH C2114 SITE 4 AC7 15 HOH C2124 HOH C2144 HOH C2145 SITE 1 AC8 19 CYS D 50 ASP D 54 GLY D 58 CYS D 61 SITE 2 AC8 19 GLU D 62 ARG D 129 ILE D 133 ALA D 136 SITE 3 AC8 19 SER D 137 THR D 145 ALA D 146 SER D 147 SITE 4 AC8 19 LYS D 148 ARG D 149 HOH D2052 HOH D2143 SITE 5 AC8 19 HOH D2144 HOH D2145 HOH D2146 SITE 1 AC9 19 MEN D 72 CYS D 73 ARG D 77 ARG D 78 SITE 2 AC9 19 ALA D 81 CYS D 82 ARG D 84 ASP D 85 SITE 3 AC9 19 ILE D 88 ARG D 108 LEU D 113 THR D 116 SITE 4 AC9 19 LEU D 120 VAL D 122 PRO D 123 ALA D 127 SITE 5 AC9 19 HOH D2147 HOH D2148 HOH D2149 SITE 1 BC1 23 ARG A 33 GLN A 147 GLU C 25 GLN C 28 SITE 2 BC1 23 ASN D 35 LYS D 36 LEU D 38 ASP D 39 SITE 3 BC1 23 ILE D 142 ASN D 143 ASN D 144 THR D 153 SITE 4 BC1 23 PRO D 154 GLN D 155 GLY D 156 CYS D 158 SITE 5 BC1 23 HOH D2124 HOH D2150 HOH D2151 HOH D2152 SITE 6 BC1 23 HOH D2153 HOH D2154 HOH D2155 CRYST1 155.829 155.829 155.829 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006417 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006417 0.00000 MTRIX1 1 0.310720 -0.814280 0.490300 -0.33240 1 MTRIX2 1 -0.812090 -0.495480 -0.308240 52.44204 1 MTRIX3 1 0.493930 -0.302390 -0.815230 87.66493 1 MTRIX1 2 0.312690 -0.810890 0.494660 -0.71009 1 MTRIX2 2 -0.815410 -0.496260 -0.298060 52.10359 1 MTRIX3 2 0.487170 -0.310150 -0.816380 87.91267 1