HEADER TRANSFERASE 11-DEC-07 2VJP TITLE FORMYL-COA TRANSFERASE MUTANT VARIANT W48F COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMYL-COENZYME A TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FORMYL-COA TRANSFERASE; COMPND 5 EC: 2.8.3.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OXALOBACTER FORMIGENES; SOURCE 3 ORGANISM_TAXID: 847; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-9A KEYWDS TRANSFERASE, CLASS III COA TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.G.TOYOTA,C.L.BERTHOLD,A.GRUEZ,S.JONSSON,Y.LINDQVIST,C.CAMBILLAU, AUTHOR 2 N.G.J.RICHARDS REVDAT 4 13-DEC-23 2VJP 1 REMARK LINK REVDAT 3 06-APR-11 2VJP 1 VERSN REVDAT 2 24-FEB-09 2VJP 1 VERSN REVDAT 1 15-JAN-08 2VJP 0 JRNL AUTH C.G.TOYOTA,C.L.BERTHOLD,A.GRUEZ,S.JONSSON,Y.LINDQVIST, JRNL AUTH 2 C.CAMBILLAU,N.G.J.RICHARDS JRNL TITL DIFFERENTIAL SUBSTRATE SPECIFICITY AND KINETIC BEHAVIOR OF JRNL TITL 2 ESCHERICHIA COLI YFDW AND OXALOBACTER FORMIGENES FORMYL JRNL TITL 3 COENZYME A TRANSFERASE. JRNL REF J.BACTERIOL. V. 190 2556 2008 JRNL REFN ISSN 0021-9193 JRNL PMID 18245280 JRNL DOI 10.1128/JB.01823-07 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 76793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4030 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5776 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 289 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 957 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.936 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6814 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4644 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9229 ; 1.107 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11359 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 868 ; 5.847 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;37.438 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1171 ;14.170 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.376 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 990 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7692 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1332 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1338 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4810 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3228 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3245 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 678 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.128 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4254 ; 0.539 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6834 ; 0.998 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2648 ; 1.353 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2387 ; 2.236 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80837 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 56.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1P5H REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 76.35800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.35800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.72400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 76.35800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.35800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.72400 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 76.35800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 76.35800 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 49.72400 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 76.35800 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 76.35800 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 49.72400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TRP 48 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, TRP 48 TO PHE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2306 O HOH B 2307 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 16 -117.52 70.16 REMARK 500 GLN A 17 -53.60 -123.44 REMARK 500 ARG A 39 119.91 -39.80 REMARK 500 SER A 41 -50.77 -137.35 REMARK 500 ASP A 169 -72.50 -77.77 REMARK 500 VAL B 16 -116.73 70.03 REMARK 500 GLU B 140 -90.92 9.66 REMARK 500 LYS B 316 18.08 -153.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2051 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2057 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2073 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2109 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B2071 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH B2072 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1429 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 O REMARK 620 2 HOH A2344 O 84.7 REMARK 620 3 HOH A2489 O 81.7 109.6 REMARK 620 4 HOH A2491 O 168.7 84.6 98.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1429 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VJO RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE MUTANT VARIANT Q17A WITH ASPARTYL-COA REMARK 900 THIOESTER INTERMEDIATES AND OXALATE REMARK 900 RELATED ID: 1VGQ RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE MUTANT ASP169 TO ALA REMARK 900 RELATED ID: 1VGR RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE MUTANT ASP169 TO GLU REMARK 900 RELATED ID: 1P5H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FORMYL-COA TRANSFERASE ( APOENZYME)FROM REMARK 900 OXALOBACTER FORMIGENES REMARK 900 RELATED ID: 1T4C RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE IN COMPLEX WITH OXALYL-COA REMARK 900 RELATED ID: 2VJL RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE WITH ASPARTYL-COA THIOESTER INTERMEDIATE REMARK 900 DERIVED FROM FORMYL-COA REMARK 900 RELATED ID: 1T3Z RELATED DB: PDB REMARK 900 FORMYL-COA TRANFERASE MUTANT ASP169 TO SER REMARK 900 RELATED ID: 2VJN RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE MUTANT VARIANT G260A REMARK 900 RELATED ID: 1P5R RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE IN COMPLEX WITH COENZYME A REMARK 900 RELATED ID: 2VJQ RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE MUTANT VARIANT W48Q REMARK 900 RELATED ID: 2VJK RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE WITH ASPARTYL-COA THIOESTER INTERMEDIATE REMARK 900 DERIVED FROM OXALYL-COA REMARK 900 RELATED ID: 2VJM RELATED DB: PDB REMARK 900 FORMYL-COA TRANSFERASE WITH ASPARTYL-FORMYL ANHYDIDE INTERMEDIATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE DEPOSITORS OF THIS ENTRY, THE SEQADV REMARK 999 LISTED BELOW IS DUE TO AN ERROR IN THE UNIPROT ENTRY REMARK 999 O06644. THE IDENTITY OF RESIDUE 186 HAS BEEN CONFIRMED REMARK 999 AS ILE. DBREF 2VJP A 1 428 UNP O06644 FCTA_OXAFO 1 428 DBREF 2VJP B 1 428 UNP O06644 FCTA_OXAFO 1 428 SEQADV 2VJP PHE A 48 UNP O06644 TRP 48 ENGINEERED MUTATION SEQADV 2VJP PHE B 48 UNP O06644 TRP 48 ENGINEERED MUTATION SEQADV 2VJP ILE A 186 UNP O06644 MET 186 SEE REMARK 999 SEQADV 2VJP ILE B 186 UNP O06644 MET 186 SEE REMARK 999 SEQRES 1 A 428 MET THR LYS PRO LEU ASP GLY ILE ASN VAL LEU ASP PHE SEQRES 2 A 428 THR HIS VAL GLN ALA GLY PRO ALA CYS THR GLN MET MET SEQRES 3 A 428 GLY PHE LEU GLY ALA ASN VAL ILE LYS ILE GLU ARG ARG SEQRES 4 A 428 GLY SER GLY ASP MET THR ARG GLY PHE LEU GLN ASP LYS SEQRES 5 A 428 PRO ASN VAL ASP SER LEU TYR PHE THR MET PHE ASN CYS SEQRES 6 A 428 ASN LYS ARG SER ILE GLU LEU ASP MET LYS THR PRO GLU SEQRES 7 A 428 GLY LYS GLU LEU LEU GLU GLN MET ILE LYS LYS ALA ASP SEQRES 8 A 428 VAL MET VAL GLU ASN PHE GLY PRO GLY ALA LEU ASP ARG SEQRES 9 A 428 MET GLY PHE THR TRP GLU TYR ILE GLN GLU LEU ASN PRO SEQRES 10 A 428 ARG VAL ILE LEU ALA SER VAL LYS GLY TYR ALA GLU GLY SEQRES 11 A 428 HIS ALA ASN GLU HIS LEU LYS VAL TYR GLU ASN VAL ALA SEQRES 12 A 428 GLN CYS SER GLY GLY ALA ALA ALA THR THR GLY PHE TRP SEQRES 13 A 428 ASP GLY PRO PRO THR VAL SER GLY ALA ALA LEU GLY ASP SEQRES 14 A 428 SER ASN SER GLY MET HIS LEU MET ILE GLY ILE LEU ALA SEQRES 15 A 428 ALA LEU GLU ILE ARG HIS LYS THR GLY ARG GLY GLN LYS SEQRES 16 A 428 VAL ALA VAL ALA MET GLN ASP ALA VAL LEU ASN LEU VAL SEQRES 17 A 428 ARG ILE LYS LEU ARG ASP GLN GLN ARG LEU GLU ARG THR SEQRES 18 A 428 GLY ILE LEU ALA GLU TYR PRO GLN ALA GLN PRO ASN PHE SEQRES 19 A 428 ALA PHE ASP ARG ASP GLY ASN PRO LEU SER PHE ASP ASN SEQRES 20 A 428 ILE THR SER VAL PRO ARG GLY GLY ASN ALA GLY GLY GLY SEQRES 21 A 428 GLY GLN PRO GLY TRP MET LEU LYS CYS LYS GLY TRP GLU SEQRES 22 A 428 THR ASP ALA ASP SER TYR VAL TYR PHE THR ILE ALA ALA SEQRES 23 A 428 ASN MET TRP PRO GLN ILE CYS ASP MET ILE ASP LYS PRO SEQRES 24 A 428 GLU TRP LYS ASP ASP PRO ALA TYR ASN THR PHE GLU GLY SEQRES 25 A 428 ARG VAL ASP LYS LEU MET ASP ILE PHE SER PHE ILE GLU SEQRES 26 A 428 THR LYS PHE ALA ASP LYS ASP LYS PHE GLU VAL THR GLU SEQRES 27 A 428 TRP ALA ALA GLN TYR GLY ILE PRO CYS GLY PRO VAL MET SEQRES 28 A 428 SER MET LYS GLU LEU ALA HIS ASP PRO SER LEU GLN LYS SEQRES 29 A 428 VAL GLY THR VAL VAL GLU VAL VAL ASP GLU ILE ARG GLY SEQRES 30 A 428 ASN HIS LEU THR VAL GLY ALA PRO PHE LYS PHE SER GLY SEQRES 31 A 428 PHE GLN PRO GLU ILE THR ARG ALA PRO LEU LEU GLY GLU SEQRES 32 A 428 HIS THR ASP GLU VAL LEU LYS GLU LEU GLY LEU ASP ASP SEQRES 33 A 428 ALA LYS ILE LYS GLU LEU HIS ALA LYS GLN VAL VAL SEQRES 1 B 428 MET THR LYS PRO LEU ASP GLY ILE ASN VAL LEU ASP PHE SEQRES 2 B 428 THR HIS VAL GLN ALA GLY PRO ALA CYS THR GLN MET MET SEQRES 3 B 428 GLY PHE LEU GLY ALA ASN VAL ILE LYS ILE GLU ARG ARG SEQRES 4 B 428 GLY SER GLY ASP MET THR ARG GLY PHE LEU GLN ASP LYS SEQRES 5 B 428 PRO ASN VAL ASP SER LEU TYR PHE THR MET PHE ASN CYS SEQRES 6 B 428 ASN LYS ARG SER ILE GLU LEU ASP MET LYS THR PRO GLU SEQRES 7 B 428 GLY LYS GLU LEU LEU GLU GLN MET ILE LYS LYS ALA ASP SEQRES 8 B 428 VAL MET VAL GLU ASN PHE GLY PRO GLY ALA LEU ASP ARG SEQRES 9 B 428 MET GLY PHE THR TRP GLU TYR ILE GLN GLU LEU ASN PRO SEQRES 10 B 428 ARG VAL ILE LEU ALA SER VAL LYS GLY TYR ALA GLU GLY SEQRES 11 B 428 HIS ALA ASN GLU HIS LEU LYS VAL TYR GLU ASN VAL ALA SEQRES 12 B 428 GLN CYS SER GLY GLY ALA ALA ALA THR THR GLY PHE TRP SEQRES 13 B 428 ASP GLY PRO PRO THR VAL SER GLY ALA ALA LEU GLY ASP SEQRES 14 B 428 SER ASN SER GLY MET HIS LEU MET ILE GLY ILE LEU ALA SEQRES 15 B 428 ALA LEU GLU ILE ARG HIS LYS THR GLY ARG GLY GLN LYS SEQRES 16 B 428 VAL ALA VAL ALA MET GLN ASP ALA VAL LEU ASN LEU VAL SEQRES 17 B 428 ARG ILE LYS LEU ARG ASP GLN GLN ARG LEU GLU ARG THR SEQRES 18 B 428 GLY ILE LEU ALA GLU TYR PRO GLN ALA GLN PRO ASN PHE SEQRES 19 B 428 ALA PHE ASP ARG ASP GLY ASN PRO LEU SER PHE ASP ASN SEQRES 20 B 428 ILE THR SER VAL PRO ARG GLY GLY ASN ALA GLY GLY GLY SEQRES 21 B 428 GLY GLN PRO GLY TRP MET LEU LYS CYS LYS GLY TRP GLU SEQRES 22 B 428 THR ASP ALA ASP SER TYR VAL TYR PHE THR ILE ALA ALA SEQRES 23 B 428 ASN MET TRP PRO GLN ILE CYS ASP MET ILE ASP LYS PRO SEQRES 24 B 428 GLU TRP LYS ASP ASP PRO ALA TYR ASN THR PHE GLU GLY SEQRES 25 B 428 ARG VAL ASP LYS LEU MET ASP ILE PHE SER PHE ILE GLU SEQRES 26 B 428 THR LYS PHE ALA ASP LYS ASP LYS PHE GLU VAL THR GLU SEQRES 27 B 428 TRP ALA ALA GLN TYR GLY ILE PRO CYS GLY PRO VAL MET SEQRES 28 B 428 SER MET LYS GLU LEU ALA HIS ASP PRO SER LEU GLN LYS SEQRES 29 B 428 VAL GLY THR VAL VAL GLU VAL VAL ASP GLU ILE ARG GLY SEQRES 30 B 428 ASN HIS LEU THR VAL GLY ALA PRO PHE LYS PHE SER GLY SEQRES 31 B 428 PHE GLN PRO GLU ILE THR ARG ALA PRO LEU LEU GLY GLU SEQRES 32 B 428 HIS THR ASP GLU VAL LEU LYS GLU LEU GLY LEU ASP ASP SEQRES 33 B 428 ALA LYS ILE LYS GLU LEU HIS ALA LYS GLN VAL VAL HET NA A1429 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *957(H2 O) HELIX 1 1 GLN A 17 LEU A 29 1 13 HELIX 2 2 ASP A 43 PHE A 48 5 6 HELIX 3 3 SER A 57 MET A 62 1 6 HELIX 4 4 THR A 76 ALA A 90 1 15 HELIX 5 5 GLY A 100 MET A 105 1 6 HELIX 6 6 THR A 108 ASN A 116 1 9 HELIX 7 7 TYR A 139 GLY A 147 1 9 HELIX 8 8 ALA A 149 THR A 153 5 5 HELIX 9 9 GLY A 168 GLY A 191 1 24 HELIX 10 10 MET A 200 VAL A 208 1 9 HELIX 11 11 VAL A 208 GLY A 222 1 15 HELIX 12 12 TYR A 227 GLN A 231 5 5 HELIX 13 13 SER A 244 ILE A 248 5 5 HELIX 14 14 ALA A 285 ASN A 287 5 3 HELIX 15 15 MET A 288 ILE A 296 1 9 HELIX 16 16 LYS A 298 LYS A 302 5 5 HELIX 17 17 THR A 309 VAL A 314 1 6 HELIX 18 18 LYS A 316 LYS A 327 1 12 HELIX 19 19 ASP A 332 TYR A 343 1 12 HELIX 20 20 SER A 352 HIS A 358 1 7 HELIX 21 21 ASP A 359 VAL A 365 1 7 HELIX 22 22 HIS A 404 LEU A 412 1 9 HELIX 23 23 ASP A 415 LYS A 425 1 11 HELIX 24 24 GLN B 17 LEU B 29 1 13 HELIX 25 25 ASP B 43 PHE B 48 5 6 HELIX 26 26 SER B 57 ASN B 64 1 8 HELIX 27 27 THR B 76 ALA B 90 1 15 HELIX 28 28 GLY B 100 MET B 105 1 6 HELIX 29 29 THR B 108 ASN B 116 1 9 HELIX 30 30 TYR B 139 GLY B 147 1 9 HELIX 31 31 ALA B 149 THR B 153 5 5 HELIX 32 32 GLY B 168 GLY B 191 1 24 HELIX 33 33 MET B 200 VAL B 208 1 9 HELIX 34 34 VAL B 208 GLY B 222 1 15 HELIX 35 35 TYR B 227 GLN B 231 5 5 HELIX 36 36 SER B 244 ILE B 248 5 5 HELIX 37 37 ALA B 285 ASN B 287 5 3 HELIX 38 38 MET B 288 ILE B 296 1 9 HELIX 39 39 LYS B 298 LYS B 302 5 5 HELIX 40 40 THR B 309 VAL B 314 1 6 HELIX 41 41 LYS B 316 LYS B 327 1 12 HELIX 42 42 ASP B 332 GLN B 342 1 11 HELIX 43 43 SER B 352 HIS B 358 1 7 HELIX 44 44 ASP B 359 VAL B 365 1 7 HELIX 45 45 HIS B 404 LEU B 412 1 9 HELIX 46 46 ASP B 415 LYS B 425 1 11 SHEET 1 AA 7 ARG A 68 LEU A 72 0 SHEET 2 AA 7 ASN A 32 ARG A 38 1 O VAL A 33 N ARG A 68 SHEET 3 AA 7 ASN A 9 ASP A 12 1 O VAL A 10 N ILE A 34 SHEET 4 AA 7 VAL A 92 GLU A 95 1 O VAL A 92 N LEU A 11 SHEET 5 AA 7 ILE A 120 LYS A 125 1 O ILE A 120 N MET A 93 SHEET 6 AA 7 LYS A 195 ALA A 199 1 O VAL A 196 N SER A 123 SHEET 7 AA 7 PHE B 386 PHE B 388 -1 O LYS B 387 N ALA A 197 SHEET 1 AB 3 GLY A 264 LYS A 268 0 SHEET 2 AB 3 TYR A 279 THR A 283 -1 O VAL A 280 N LEU A 267 SHEET 3 AB 3 CYS A 347 PRO A 349 -1 O GLY A 348 N TYR A 281 SHEET 1 AC 2 VAL A 368 VAL A 371 0 SHEET 2 AC 2 HIS A 379 VAL A 382 -1 O HIS A 379 N VAL A 371 SHEET 1 AD 7 PHE A 386 PHE A 388 0 SHEET 2 AD 7 LYS B 195 ALA B 199 -1 O ALA B 197 N LYS A 387 SHEET 3 AD 7 ILE B 120 LYS B 125 1 O LEU B 121 N VAL B 196 SHEET 4 AD 7 VAL B 92 GLU B 95 1 O MET B 93 N ALA B 122 SHEET 5 AD 7 ASN B 9 ASP B 12 1 O LEU B 11 N VAL B 94 SHEET 6 AD 7 ASN B 32 ARG B 38 1 O ASN B 32 N VAL B 10 SHEET 7 AD 7 ARG B 68 LEU B 72 1 O ARG B 68 N LYS B 35 SHEET 1 BA 3 GLY B 264 LYS B 268 0 SHEET 2 BA 3 TYR B 279 THR B 283 -1 O VAL B 280 N LEU B 267 SHEET 3 BA 3 CYS B 347 PRO B 349 -1 O GLY B 348 N TYR B 281 SHEET 1 BB 2 VAL B 368 VAL B 371 0 SHEET 2 BB 2 HIS B 379 VAL B 382 -1 O HIS B 379 N VAL B 371 LINK O ASP A 294 NA NA A1429 1555 1555 2.44 LINK NA NA A1429 O HOH A2344 1555 1555 2.54 LINK NA NA A1429 O HOH A2489 1555 6445 2.40 LINK NA NA A1429 O HOH A2491 1555 6445 2.45 SITE 1 AC1 5 ASP A 294 ASP A 297 HOH A2344 HOH A2489 SITE 2 AC1 5 HOH A2491 CRYST1 152.716 152.716 99.448 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010056 0.00000 MTRIX1 1 0.838560 -0.466160 -0.281990 -15.48496 1 MTRIX2 1 -0.466420 -0.881740 0.070600 -54.76942 1 MTRIX3 1 -0.281550 0.072330 -0.956820 -8.72186 1