HEADER    HYDROLASE                               18-DEC-07   2VKC              
TITLE     SOLUTION STRUCTURE OF THE B3BP SMR DOMAIN                             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NEDD4-BINDING PROTEIN 2;                                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 1666-1770;                                        
COMPND   5 SYNONYM: N4BP2, BCL-3-BINDING PROTEIN, B3BP SMR DOMAIN;              
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    HUMAN BCL3 BINDING PROTEIN, ALTERNATIVE SPLICING, HOMOLOGOUS          
KEYWDS   2 RECOMBINATION, MISMATCH REPAIR, SMALL MUTS RELATED, NUCLEOTIDE-      
KEYWDS   3 BINDING, ATP-BINDING, UBL CONJUGATION, PHOSPHORYLATION, SMR, B3BP,   
KEYWDS   4 HYDROLASE, CYTOPLASM, COILED COIL                                    
EXPDTA    SOLUTION NMR                                                          
NUMMDL    28                                                                    
AUTHOR    T.DIERCKS,E.AB,M.A.DANIELS,R.N.DEJONG,R.BESSELING,R.KAPTEIN,          
AUTHOR   2 G.E.FOLKERS                                                          
REVDAT   4   15-MAY-24 2VKC    1       ATOM                                     
REVDAT   3   24-MAR-09 2VKC    1       ATOM                                     
REVDAT   2   24-FEB-09 2VKC    1       VERSN                                    
REVDAT   1   14-OCT-08 2VKC    0                                                
JRNL        AUTH   T.DIERCKS,E.AB,M.A.DANIELS,R.N.DE JONG,R.BESSELING,          
JRNL        AUTH 2 R.KAPTEIN,G.E.FOLKERS                                        
JRNL        TITL   SOLUTION STRUCTURE AND CHARACTERIZATION OF THE DNA- BINDING  
JRNL        TITL 2 ACTIVITY OF THE B3BP-SMR DOMAIN.                             
JRNL        REF    J.MOL.BIOL.                   V. 383  1156 2008              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   18804481                                                     
JRNL        DOI    10.1016/J.JMB.2008.09.005                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE-             
REMARK   3                 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,  
REMARK   3                 SIMONSON,WARREN                                      
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: RECORD PROTOCOL                           
REMARK   4                                                                      
REMARK   4 2VKC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-07.                  
REMARK 100 THE DEPOSITION ID IS D_1290034814.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 308.0                              
REMARK 210  PH                             : 6.0                                
REMARK 210  IONIC STRENGTH                 : 200                                
REMARK 210  PRESSURE                       : 1.0 ATM                            
REMARK 210  SAMPLE CONTENTS                : 95% WATER/5% D2O                   
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : HCH-NOESY; HNH-NOESY; CNH-         
REMARK 210                                   NOESY; 2D-NON-NOESY; 2D- NOESY     
REMARK 210  SPECTROMETER FIELD STRENGTH    : 700 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DMX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : CYANA                              
REMARK 210   METHOD USED                   : CANDID,PROXIES                     
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 250                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 28                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : QUALITY                            
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NONE                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-28                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     MET A  1636                                                      
REMARK 465     GLY A  1637                                                      
REMARK 465     SER A  1638                                                      
REMARK 465     SER A  1639                                                      
REMARK 465     HIS A  1640                                                      
REMARK 465     HIS A  1641                                                      
REMARK 465     HIS A  1642                                                      
REMARK 465     HIS A  1643                                                      
REMARK 465     HIS A  1644                                                      
REMARK 465     HIS A  1645                                                      
REMARK 465     SER A  1646                                                      
REMARK 465     SER A  1647                                                      
REMARK 465     HIS A  1648                                                      
REMARK 465     MET A  1649                                                      
REMARK 465     LEU A  1650                                                      
REMARK 465     VAL A  1651                                                      
REMARK 465     PRO A  1652                                                      
REMARK 465     ARG A  1653                                                      
REMARK 465     GLY A  1654                                                      
REMARK 465     SER A  1655                                                      
REMARK 465     LEU A  1656                                                      
REMARK 465     GLN A  1657                                                      
REMARK 465     GLN A  1658                                                      
REMARK 465     GLY A  1659                                                      
REMARK 465     THR A  1660                                                      
REMARK 465     LEU A  1661                                                      
REMARK 465     HIS A  1662                                                      
REMARK 465     GLU A  1663                                                      
REMARK 465     GLN A  1664                                                      
REMARK 465     LYS A  1665                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HZ3  LYS A  1743     OE2  GLU A  1759              1.58            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500 26 PRO A1762   C   -  N   -  CA  ANGL. DEV. =   9.3 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LEU A1693       45.38   -143.53                                   
REMARK 500  1 HIS A1734      -60.71    168.96                                   
REMARK 500  1 ILE A1760      -72.96    -71.68                                   
REMARK 500  1 LYS A1761     -154.41   -150.88                                   
REMARK 500  1 PRO A1762       99.88    -48.71                                   
REMARK 500  2 ASN A1689       52.78     74.67                                   
REMARK 500  2 LEU A1693       39.52   -149.20                                   
REMARK 500  2 HIS A1734      -59.87   -173.40                                   
REMARK 500  2 ILE A1760      -73.13    -78.71                                   
REMARK 500  2 LYS A1761     -146.52   -163.20                                   
REMARK 500  2 PRO A1762       67.27    -11.25                                   
REMARK 500  3 PRO A1723       26.53    -75.27                                   
REMARK 500  3 ARG A1731     -167.10     76.16                                   
REMARK 500  3 HIS A1734      -74.24   -154.79                                   
REMARK 500  3 SER A1735      -77.65   -131.00                                   
REMARK 500  3 VAL A1739       32.46    -89.39                                   
REMARK 500  3 LYS A1761     -145.47    178.78                                   
REMARK 500  3 PRO A1762       53.16     -9.51                                   
REMARK 500  4 ASN A1689       61.33     64.14                                   
REMARK 500  4 LEU A1693       41.25   -158.54                                   
REMARK 500  4 SER A1735     -161.82   -171.03                                   
REMARK 500  4 LYS A1761     -145.25   -178.65                                   
REMARK 500  4 PRO A1762       88.53    -22.15                                   
REMARK 500  5 ASN A1689       73.36     59.30                                   
REMARK 500  5 LEU A1693       40.07   -142.28                                   
REMARK 500  5 ASN A1733      106.97    -19.80                                   
REMARK 500  5 HIS A1734      -49.91    108.52                                   
REMARK 500  5 SER A1735      -47.44    171.95                                   
REMARK 500  5 VAL A1739      -73.02     67.10                                   
REMARK 500  5 ALA A1740       77.54     47.38                                   
REMARK 500  5 ILE A1760      -71.47    -89.84                                   
REMARK 500  5 LYS A1761     -147.67   -151.50                                   
REMARK 500  5 PRO A1762       73.37    -23.74                                   
REMARK 500  6 PRO A1723       23.48    -74.02                                   
REMARK 500  6 ARG A1741      -40.04     68.60                                   
REMARK 500  6 LYS A1761     -146.37    172.37                                   
REMARK 500  6 PRO A1762       48.58     -3.70                                   
REMARK 500  7 ASN A1689       47.30     80.81                                   
REMARK 500  7 LEU A1693       43.26   -159.42                                   
REMARK 500  7 ARG A1731      -39.70     74.91                                   
REMARK 500  7 SER A1735       41.68   -154.27                                   
REMARK 500  7 VAL A1739      -70.77    -99.78                                   
REMARK 500  7 ALA A1740       73.61     12.93                                   
REMARK 500  7 ILE A1760      -77.44    -87.90                                   
REMARK 500  7 LYS A1761     -148.11   -153.55                                   
REMARK 500  7 PRO A1762       84.06    -30.02                                   
REMARK 500  8 PRO A1723       20.40    -74.65                                   
REMARK 500  8 SER A1735     -158.09   -117.37                                   
REMARK 500  8 VAL A1739      -67.43    -95.97                                   
REMARK 500  8 ALA A1740       73.48     53.13                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     166 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  1 ARG A1707         0.09    SIDE CHAIN                              
REMARK 500  3 ARG A1707         0.11    SIDE CHAIN                              
REMARK 500  4 ARG A1707         0.08    SIDE CHAIN                              
REMARK 500  5 ARG A1731         0.07    SIDE CHAIN                              
REMARK 500  9 ARG A1707         0.10    SIDE CHAIN                              
REMARK 500 18 ARG A1707         0.08    SIDE CHAIN                              
REMARK 500 19 ARG A1707         0.07    SIDE CHAIN                              
REMARK 500 22 ARG A1707         0.11    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2D9I   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF THE SMR DOMAIN OF NEDD4-BINDINGPROTEIN 2       
DBREF  2VKC A 1666  1770  UNP    Q86UW6   N4BP2_HUMAN   1666   1770             
SEQRES   1 A  135  MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER HIS          
SEQRES   2 A  135  MET LEU VAL PRO ARG GLY SER LEU GLN GLN GLY THR LEU          
SEQRES   3 A  135  HIS GLU GLN LYS MET LYS GLU ALA ASN HIS LEU ALA ALA          
SEQRES   4 A  135  ILE GLU ILE PHE GLU LYS VAL ASN ALA SER LEU LEU PRO          
SEQRES   5 A  135  GLN ASN VAL LEU ASP LEU HIS GLY LEU HIS VAL ASP GLU          
SEQRES   6 A  135  ALA LEU GLU HIS LEU MET ARG VAL LEU GLU LYS LYS THR          
SEQRES   7 A  135  GLU GLU PHE LYS GLN ASN GLY GLY LYS PRO TYR LEU SER          
SEQRES   8 A  135  VAL ILE THR GLY ARG GLY ASN HIS SER GLN GLY GLY VAL          
SEQRES   9 A  135  ALA ARG ILE LYS PRO ALA VAL ILE LYS TYR LEU ILE SER          
SEQRES  10 A  135  HIS SER PHE ARG PHE SER GLU ILE LYS PRO GLY CYS LEU          
SEQRES  11 A  135  LYS VAL MET LEU LYS                                          
HELIX    1   1 GLU A 1668  LEU A 1686  1                                  19    
HELIX    2   2 HIS A 1697  GLN A 1718  1                                  22    
HELIX    3   3 ARG A 1741  SER A 1752  1                                  12    
SHEET    1  AA 4 VAL A1690  ASP A1692  0                                        
SHEET    2  AA 4 TYR A1724  ILE A1728  1  O  SER A1726   N  LEU A1691           
SHEET    3  AA 4 CYS A1764  MET A1768 -1  O  LEU A1765   N  VAL A1727           
SHEET    4  AA 4 ARG A1756  GLU A1759 -1  O  ARG A1756   N  MET A1768           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1