HEADER TOXIN 18-DEC-07 2VKD TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF LETHAL TOXIN TITLE 2 FROM CLOSTRIDIUM SORDELLII IN COMPLEX WITH UDP-GLC AND TITLE 3 MANGANESE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOTOXIN L; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-546; COMPND 5 SYNONYM: LETHAL TOXIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM SORDELLII; SOURCE 3 ORGANISM_TAXID: 1505; SOURCE 4 STRAIN: 6018; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN, GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.O.P.ZIEGLER,T.JANK,K.AKTORIES,G.E.SCHULZ REVDAT 4 13-JUL-11 2VKD 1 VERSN REVDAT 3 24-FEB-09 2VKD 1 VERSN REVDAT 2 08-APR-08 2VKD 1 JRNL REVDAT 1 18-MAR-08 2VKD 0 JRNL AUTH M.O.P.ZIEGLER,T.JANK,K.AKTORIES,G.E.SCHULZ JRNL TITL CONFORMATIONAL CHANGES AND REACTION OF CLOSTRIDIAL JRNL TITL 2 GLYCOSYLATING TOXINS. JRNL REF J.MOL.BIOL. V. 377 1346 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18325534 JRNL DOI 10.1016/J.JMB.2007.12.065 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 71809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3780 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 277 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 2.03000 REMARK 3 B33 (A**2) : -2.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.554 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.322 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.640 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 13674 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 18476 ; 1.108 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1618 ; 5.157 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 695 ;38.059 ;25.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2585 ;15.900 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.847 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2045 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10197 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 6008 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 9562 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 463 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 8339 ; 0.488 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 13162 ; 0.879 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6071 ; 0.883 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5314 ; 1.441 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 542 REMARK 3 RESIDUE RANGE : B 3 B 540 REMARK 3 RESIDUE RANGE : C 1 C 541 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4570 -10.7410 42.5490 REMARK 3 T TENSOR REMARK 3 T11: 0.0078 T22: 0.1397 REMARK 3 T33: 0.0450 T12: -0.0288 REMARK 3 T13: -0.0286 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.0041 L22: 0.3908 REMARK 3 L33: 0.1234 L12: 0.0324 REMARK 3 L13: 0.0070 L23: -0.0673 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.0256 S13: -0.0369 REMARK 3 S21: -0.0639 S22: 0.0442 S23: 0.0108 REMARK 3 S31: -0.0411 S32: -0.0627 S33: -0.0348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-07. REMARK 100 THE PDBE ID CODE IS EBI-34826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99996 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.53 REMARK 200 RESOLUTION RANGE LOW (A) : 90.17 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.9 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.0 REMARK 200 R MERGE FOR SHELL (I) : 0.41 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.64350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.20950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 95.16100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.20950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.64350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 95.16100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 13 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ILE 289 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, VAL 13 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ILE 289 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN C, VAL 13 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ILE 289 TO MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 543 REMARK 465 GLY A 544 REMARK 465 GLU A 545 REMARK 465 ASP A 546 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLY B 541 REMARK 465 ALA B 542 REMARK 465 LEU B 543 REMARK 465 GLY B 544 REMARK 465 GLU B 545 REMARK 465 ASP B 546 REMARK 465 ALA C 542 REMARK 465 LEU C 543 REMARK 465 GLY C 544 REMARK 465 GLU C 545 REMARK 465 ASP C 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 17 -1.18 73.45 REMARK 500 ASN A 36 44.96 -104.65 REMARK 500 TYR A 63 76.43 -114.53 REMARK 500 ALA A 135 43.69 -143.58 REMARK 500 PRO A 164 -79.77 -90.17 REMARK 500 PHE A 166 56.86 -92.46 REMARK 500 GLU A 196 -70.31 -51.64 REMARK 500 GLU A 244 -60.16 -109.67 REMARK 500 SER A 352 48.59 -90.93 REMARK 500 SER A 354 -79.95 -89.01 REMARK 500 ASP A 364 -141.02 49.42 REMARK 500 THR A 489 -33.62 -138.43 REMARK 500 VAL B 4 145.46 -39.43 REMARK 500 TYR B 63 73.28 -117.23 REMARK 500 PRO B 164 -84.17 -73.52 REMARK 500 PHE B 166 46.18 -78.70 REMARK 500 ASP B 167 -162.72 -76.13 REMARK 500 ASN B 235 48.16 -144.05 REMARK 500 GLU B 244 -90.35 -119.78 REMARK 500 PHE B 246 20.66 -79.58 REMARK 500 ILE B 359 -66.57 -106.47 REMARK 500 ASP B 364 -146.88 51.08 REMARK 500 ILE B 438 32.18 -98.83 REMARK 500 PHE B 539 -35.33 -140.98 REMARK 500 PHE C 17 -11.98 75.27 REMARK 500 TYR C 63 72.74 -109.18 REMARK 500 ASN C 160 40.41 -100.68 REMARK 500 PRO C 164 -104.55 -84.45 REMARK 500 ASP C 167 -160.83 -107.83 REMARK 500 PRO C 198 0.37 -64.94 REMARK 500 ASN C 242 -55.72 -121.75 REMARK 500 ILE C 359 -61.56 -102.44 REMARK 500 ASP C 364 -132.21 41.35 REMARK 500 ASN C 380 -0.26 68.22 REMARK 500 GLU C 420 30.35 -97.23 REMARK 500 SER C 469 -10.13 -145.98 REMARK 500 ILE C 516 33.71 -74.81 REMARK 500 THR C 517 113.50 -161.29 REMARK 500 PHE C 539 39.78 -157.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1543 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 288 OD2 REMARK 620 2 GLU A 515 OE1 75.9 REMARK 620 3 HOH A2047 O 78.9 83.8 REMARK 620 4 UPG A1544 O1B 157.6 117.5 84.7 REMARK 620 5 UPG A1544 O1A 88.3 163.9 96.7 78.5 REMARK 620 6 HOH A2046 O 105.3 90.1 171.6 93.1 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1551 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 280 OD1 REMARK 620 2 GLU B 219 OE2 85.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1541 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UPG B1544 O1A REMARK 620 2 UPG B1544 O1B 82.1 REMARK 620 3 ASP B 288 OD2 77.3 159.1 REMARK 620 4 GLU B 515 OE1 159.5 118.2 82.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C1542 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 515 OE1 REMARK 620 2 ASP C 288 OD2 95.9 REMARK 620 3 HOH C2044 O 87.3 87.5 REMARK 620 4 UPG C1544 O1B 108.9 150.7 78.6 REMARK 620 5 UPG C1544 O1A 163.8 82.2 76.6 69.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A1544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B1541 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG B1544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C1542 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG C1544 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VL8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF REMARK 900 LETHAL TOXIN FROM CLOSTRIDIUM SORDELLII IN REMARK 900 COMPLEX WITH UDP, CASTANOSPERMINE AND CALCIUM REMARK 900 ION REMARK 900 RELATED ID: 2VKH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF REMARK 900 LETHAL TOXIN FROM CLOSTRIDIUM SORDELLII IN REMARK 900 COMPLEX WITH UDP-GLC AND CALCIUM ION DBREF 2VKD A 1 546 UNP Q46342 Q46342_CLOSO 1 546 DBREF 2VKD B 1 546 UNP Q46342 Q46342_CLOSO 1 546 DBREF 2VKD C 1 546 UNP Q46342 Q46342_CLOSO 1 546 SEQADV 2VKD ALA A 13 UNP Q46342 VAL 13 ENGINEERED MUTATION SEQADV 2VKD MET A 289 UNP Q46342 ILE 289 ENGINEERED MUTATION SEQADV 2VKD ALA B 13 UNP Q46342 VAL 13 ENGINEERED MUTATION SEQADV 2VKD MET B 289 UNP Q46342 ILE 289 ENGINEERED MUTATION SEQADV 2VKD ALA C 13 UNP Q46342 VAL 13 ENGINEERED MUTATION SEQADV 2VKD MET C 289 UNP Q46342 ILE 289 ENGINEERED MUTATION SEQRES 1 A 546 MET ASN LEU VAL ASN LYS ALA GLN LEU GLN LYS MET ALA SEQRES 2 A 546 TYR VAL LYS PHE ARG ILE GLN GLU ASP GLU TYR VAL ALA SEQRES 3 A 546 ILE LEU ASN ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 A 546 SER SER VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 A 546 ASN ASN LEU THR ASP ASN TYR LEU ASN THR TYR LYS LYS SEQRES 6 A 546 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 A 546 LEU THR MET GLU VAL LEU GLU LEU LYS ASN ASN SER LEU SEQRES 8 A 546 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 A 546 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 A 546 TRP LYS ASP VAL ASN SER ASP TYR THR VAL LYS VAL PHE SEQRES 11 A 546 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 A 546 THR ILE VAL GLU SER ALA THR ASN ASN THR LEU GLU SER SEQRES 13 A 546 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASP TYR ASN SEQRES 14 A 546 LYS PHE TYR ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 A 546 GLN LYS HIS PHE ILE ASP TYR TYR LYS SER GLN ILE GLU SEQRES 16 A 546 GLU ASN PRO GLU PHE ILE ILE ASP ASN ILE ILE LYS THR SEQRES 17 A 546 TYR LEU SER ASN GLU TYR SER LYS ASP LEU GLU ALA LEU SEQRES 18 A 546 ASN LYS TYR ILE GLU GLU SER LEU ASN LYS ILE THR ALA SEQRES 19 A 546 ASN ASN GLY ASN ASP ILE ARG ASN LEU GLU LYS PHE ALA SEQRES 20 A 546 ASP GLU ASP LEU VAL ARG LEU TYR ASN GLN GLU LEU VAL SEQRES 21 A 546 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 A 546 ILE SER MET LEU LYS GLU ASP GLY GLY VAL TYR LEU ASP SEQRES 23 A 546 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE LYS SEQRES 24 A 546 SER ILE ASN LYS PRO ASP SER ILE THR ASN THR SER TRP SEQRES 25 A 546 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 A 546 TYR ILE PRO GLY TYR THR SER LYS ASN PHE ASP MET LEU SEQRES 27 A 546 ASP GLU GLU VAL GLN ARG SER PHE GLU SER ALA LEU SER SEQRES 28 A 546 SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU ASP SEQRES 29 A 546 ASP ILE LYS VAL SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 A 546 ALA ASN ASN SER VAL ILE ASN GLN ALA LEU ILE SER LEU SEQRES 31 A 546 LYS ASP SER TYR CYS SER ASP LEU VAL ILE ASN GLN ILE SEQRES 32 A 546 LYS ASN ARG TYR LYS ILE LEU ASN ASP ASN LEU ASN PRO SEQRES 33 A 546 SER ILE ASN GLU GLY THR ASP PHE ASN THR THR MET LYS SEQRES 34 A 546 ILE PHE SER ASP LYS LEU ALA SER ILE SER ASN GLU ASP SEQRES 35 A 546 ASN MET MET PHE MET ILE LYS ILE THR ASN TYR LEU LYS SEQRES 36 A 546 VAL GLY PHE ALA PRO ASP VAL ARG SER THR ILE ASN LEU SEQRES 37 A 546 SER GLY PRO GLY VAL TYR THR GLY ALA TYR GLN ASP LEU SEQRES 38 A 546 LEU MET PHE LYS ASP ASN SER THR ASN ILE HIS LEU LEU SEQRES 39 A 546 GLU PRO GLU LEU ARG ASN PHE GLU PHE PRO LYS THR LYS SEQRES 40 A 546 ILE SER GLN LEU THR GLU GLN GLU ILE THR SER LEU TRP SEQRES 41 A 546 SER PHE ASN GLN ALA ARG ALA LYS SER GLN PHE GLU GLU SEQRES 42 A 546 TYR LYS LYS GLY TYR PHE GLU GLY ALA LEU GLY GLU ASP SEQRES 1 B 546 MET ASN LEU VAL ASN LYS ALA GLN LEU GLN LYS MET ALA SEQRES 2 B 546 TYR VAL LYS PHE ARG ILE GLN GLU ASP GLU TYR VAL ALA SEQRES 3 B 546 ILE LEU ASN ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 B 546 SER SER VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 B 546 ASN ASN LEU THR ASP ASN TYR LEU ASN THR TYR LYS LYS SEQRES 6 B 546 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 B 546 LEU THR MET GLU VAL LEU GLU LEU LYS ASN ASN SER LEU SEQRES 8 B 546 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 B 546 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 B 546 TRP LYS ASP VAL ASN SER ASP TYR THR VAL LYS VAL PHE SEQRES 11 B 546 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 B 546 THR ILE VAL GLU SER ALA THR ASN ASN THR LEU GLU SER SEQRES 13 B 546 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASP TYR ASN SEQRES 14 B 546 LYS PHE TYR ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 B 546 GLN LYS HIS PHE ILE ASP TYR TYR LYS SER GLN ILE GLU SEQRES 16 B 546 GLU ASN PRO GLU PHE ILE ILE ASP ASN ILE ILE LYS THR SEQRES 17 B 546 TYR LEU SER ASN GLU TYR SER LYS ASP LEU GLU ALA LEU SEQRES 18 B 546 ASN LYS TYR ILE GLU GLU SER LEU ASN LYS ILE THR ALA SEQRES 19 B 546 ASN ASN GLY ASN ASP ILE ARG ASN LEU GLU LYS PHE ALA SEQRES 20 B 546 ASP GLU ASP LEU VAL ARG LEU TYR ASN GLN GLU LEU VAL SEQRES 21 B 546 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 B 546 ILE SER MET LEU LYS GLU ASP GLY GLY VAL TYR LEU ASP SEQRES 23 B 546 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE LYS SEQRES 24 B 546 SER ILE ASN LYS PRO ASP SER ILE THR ASN THR SER TRP SEQRES 25 B 546 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 B 546 TYR ILE PRO GLY TYR THR SER LYS ASN PHE ASP MET LEU SEQRES 27 B 546 ASP GLU GLU VAL GLN ARG SER PHE GLU SER ALA LEU SER SEQRES 28 B 546 SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU ASP SEQRES 29 B 546 ASP ILE LYS VAL SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 B 546 ALA ASN ASN SER VAL ILE ASN GLN ALA LEU ILE SER LEU SEQRES 31 B 546 LYS ASP SER TYR CYS SER ASP LEU VAL ILE ASN GLN ILE SEQRES 32 B 546 LYS ASN ARG TYR LYS ILE LEU ASN ASP ASN LEU ASN PRO SEQRES 33 B 546 SER ILE ASN GLU GLY THR ASP PHE ASN THR THR MET LYS SEQRES 34 B 546 ILE PHE SER ASP LYS LEU ALA SER ILE SER ASN GLU ASP SEQRES 35 B 546 ASN MET MET PHE MET ILE LYS ILE THR ASN TYR LEU LYS SEQRES 36 B 546 VAL GLY PHE ALA PRO ASP VAL ARG SER THR ILE ASN LEU SEQRES 37 B 546 SER GLY PRO GLY VAL TYR THR GLY ALA TYR GLN ASP LEU SEQRES 38 B 546 LEU MET PHE LYS ASP ASN SER THR ASN ILE HIS LEU LEU SEQRES 39 B 546 GLU PRO GLU LEU ARG ASN PHE GLU PHE PRO LYS THR LYS SEQRES 40 B 546 ILE SER GLN LEU THR GLU GLN GLU ILE THR SER LEU TRP SEQRES 41 B 546 SER PHE ASN GLN ALA ARG ALA LYS SER GLN PHE GLU GLU SEQRES 42 B 546 TYR LYS LYS GLY TYR PHE GLU GLY ALA LEU GLY GLU ASP SEQRES 1 C 546 MET ASN LEU VAL ASN LYS ALA GLN LEU GLN LYS MET ALA SEQRES 2 C 546 TYR VAL LYS PHE ARG ILE GLN GLU ASP GLU TYR VAL ALA SEQRES 3 C 546 ILE LEU ASN ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 C 546 SER SER VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 C 546 ASN ASN LEU THR ASP ASN TYR LEU ASN THR TYR LYS LYS SEQRES 6 C 546 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 C 546 LEU THR MET GLU VAL LEU GLU LEU LYS ASN ASN SER LEU SEQRES 8 C 546 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 C 546 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 C 546 TRP LYS ASP VAL ASN SER ASP TYR THR VAL LYS VAL PHE SEQRES 11 C 546 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 C 546 THR ILE VAL GLU SER ALA THR ASN ASN THR LEU GLU SER SEQRES 13 C 546 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASP TYR ASN SEQRES 14 C 546 LYS PHE TYR ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 C 546 GLN LYS HIS PHE ILE ASP TYR TYR LYS SER GLN ILE GLU SEQRES 16 C 546 GLU ASN PRO GLU PHE ILE ILE ASP ASN ILE ILE LYS THR SEQRES 17 C 546 TYR LEU SER ASN GLU TYR SER LYS ASP LEU GLU ALA LEU SEQRES 18 C 546 ASN LYS TYR ILE GLU GLU SER LEU ASN LYS ILE THR ALA SEQRES 19 C 546 ASN ASN GLY ASN ASP ILE ARG ASN LEU GLU LYS PHE ALA SEQRES 20 C 546 ASP GLU ASP LEU VAL ARG LEU TYR ASN GLN GLU LEU VAL SEQRES 21 C 546 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 C 546 ILE SER MET LEU LYS GLU ASP GLY GLY VAL TYR LEU ASP SEQRES 23 C 546 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE LYS SEQRES 24 C 546 SER ILE ASN LYS PRO ASP SER ILE THR ASN THR SER TRP SEQRES 25 C 546 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 C 546 TYR ILE PRO GLY TYR THR SER LYS ASN PHE ASP MET LEU SEQRES 27 C 546 ASP GLU GLU VAL GLN ARG SER PHE GLU SER ALA LEU SER SEQRES 28 C 546 SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU ASP SEQRES 29 C 546 ASP ILE LYS VAL SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 C 546 ALA ASN ASN SER VAL ILE ASN GLN ALA LEU ILE SER LEU SEQRES 31 C 546 LYS ASP SER TYR CYS SER ASP LEU VAL ILE ASN GLN ILE SEQRES 32 C 546 LYS ASN ARG TYR LYS ILE LEU ASN ASP ASN LEU ASN PRO SEQRES 33 C 546 SER ILE ASN GLU GLY THR ASP PHE ASN THR THR MET LYS SEQRES 34 C 546 ILE PHE SER ASP LYS LEU ALA SER ILE SER ASN GLU ASP SEQRES 35 C 546 ASN MET MET PHE MET ILE LYS ILE THR ASN TYR LEU LYS SEQRES 36 C 546 VAL GLY PHE ALA PRO ASP VAL ARG SER THR ILE ASN LEU SEQRES 37 C 546 SER GLY PRO GLY VAL TYR THR GLY ALA TYR GLN ASP LEU SEQRES 38 C 546 LEU MET PHE LYS ASP ASN SER THR ASN ILE HIS LEU LEU SEQRES 39 C 546 GLU PRO GLU LEU ARG ASN PHE GLU PHE PRO LYS THR LYS SEQRES 40 C 546 ILE SER GLN LEU THR GLU GLN GLU ILE THR SER LEU TRP SEQRES 41 C 546 SER PHE ASN GLN ALA ARG ALA LYS SER GLN PHE GLU GLU SEQRES 42 C 546 TYR LYS LYS GLY TYR PHE GLU GLY ALA LEU GLY GLU ASP HET MN A1543 1 HET UPG A1544 36 HET MN A1551 1 HET MN A1552 1 HET MN B1541 1 HET UPG B1544 36 HET MN C1542 1 HET UPG C1544 36 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM MN MANGANESE (II) ION FORMUL 4 UPG 3(C15 H24 N2 O17 P2) FORMUL 5 MN 5(MN 2+) FORMUL 6 HOH *148(H2 O) HELIX 1 1 ASN A 5 TYR A 14 1 10 HELIX 2 2 GLU A 21 ASN A 36 1 16 HELIX 3 3 SER A 41 TYR A 63 1 23 HELIX 4 4 ARG A 68 ASN A 89 1 22 HELIX 5 5 ASN A 108 ASN A 122 1 15 HELIX 6 6 LEU A 137 SER A 156 1 20 HELIX 7 7 ASP A 167 ASN A 197 1 31 HELIX 8 8 ILE A 201 TYR A 214 1 14 HELIX 9 9 ASP A 217 ALA A 234 1 18 HELIX 10 10 ARG A 241 LEU A 243 5 3 HELIX 11 11 ASP A 248 GLU A 261 1 14 HELIX 12 12 ASN A 264 GLY A 281 1 18 HELIX 13 13 GLN A 294 LYS A 299 5 6 HELIX 14 14 THR A 308 LYS A 324 1 17 HELIX 15 15 ASN A 334 LEU A 338 5 5 HELIX 16 16 ASP A 339 LEU A 350 1 12 HELIX 17 17 ASP A 355 ILE A 359 5 5 HELIX 18 18 SER A 393 GLY A 421 1 29 HELIX 19 19 ASP A 423 SER A 439 1 17 HELIX 20 20 ASN A 443 THR A 451 1 9 HELIX 21 21 ASN A 452 VAL A 456 5 5 HELIX 22 22 ARG A 463 SER A 469 1 7 HELIX 23 23 GLY A 470 PHE A 484 1 15 HELIX 24 24 LEU A 494 ARG A 499 1 6 HELIX 25 25 PRO A 504 ILE A 508 5 5 HELIX 26 26 GLU A 513 THR A 517 5 5 HELIX 27 27 ASN A 523 GLY A 537 1 15 HELIX 28 28 ASN B 5 ALA B 13 1 9 HELIX 29 29 GLU B 21 HIS B 35 1 15 HELIX 30 30 SER B 41 TYR B 63 1 23 HELIX 31 31 ARG B 68 SER B 90 1 23 HELIX 32 32 ASN B 108 ASN B 122 1 15 HELIX 33 33 LEU B 137 PHE B 157 1 21 HELIX 34 34 ASP B 167 ASN B 197 1 31 HELIX 35 35 ILE B 201 GLU B 213 1 13 HELIX 36 36 ASP B 217 ALA B 234 1 18 HELIX 37 37 ARG B 241 LEU B 243 5 3 HELIX 38 38 ASP B 248 GLU B 261 1 14 HELIX 39 39 ASN B 264 GLY B 281 1 18 HELIX 40 40 GLN B 294 LYS B 299 1 6 HELIX 41 41 THR B 308 LYS B 324 1 17 HELIX 42 42 ASN B 334 LEU B 338 5 5 HELIX 43 43 ASP B 339 LEU B 350 1 12 HELIX 44 44 ASP B 355 ILE B 359 5 5 HELIX 45 45 SER B 393 GLY B 421 1 29 HELIX 46 46 ASP B 423 ILE B 438 1 16 HELIX 47 47 ASN B 443 THR B 451 1 9 HELIX 48 48 ASN B 452 VAL B 456 5 5 HELIX 49 49 GLY B 470 PHE B 484 1 15 HELIX 50 50 LEU B 494 ARG B 499 1 6 HELIX 51 51 PRO B 504 ILE B 508 5 5 HELIX 52 52 ASN B 523 LYS B 535 1 13 HELIX 53 53 LYS B 536 PHE B 539 5 4 HELIX 54 54 ASN C 5 ALA C 13 1 9 HELIX 55 55 GLU C 21 HIS C 35 1 15 HELIX 56 56 SER C 41 TYR C 63 1 23 HELIX 57 57 ARG C 68 ASN C 89 1 22 HELIX 58 58 ASN C 108 ASN C 122 1 15 HELIX 59 59 LEU C 137 GLU C 155 1 19 HELIX 60 60 SER C 156 LEU C 161 5 6 HELIX 61 61 ASP C 167 ASN C 197 1 31 HELIX 62 62 ILE C 201 SER C 215 1 15 HELIX 63 63 ASP C 217 ASN C 235 1 19 HELIX 64 64 ASP C 248 GLU C 261 1 14 HELIX 65 65 ASN C 264 GLY C 281 1 18 HELIX 66 66 THR C 308 LYS C 324 1 17 HELIX 67 67 ASN C 334 LEU C 338 5 5 HELIX 68 68 ASP C 339 LEU C 350 1 12 HELIX 69 69 ASP C 355 ILE C 359 5 5 HELIX 70 70 SER C 393 GLU C 420 1 28 HELIX 71 71 ASP C 423 ILE C 438 1 16 HELIX 72 72 ASN C 443 THR C 451 1 9 HELIX 73 73 ASN C 452 VAL C 456 5 5 HELIX 74 74 ARG C 463 ASN C 467 5 5 HELIX 75 75 GLY C 470 MET C 483 1 14 HELIX 76 76 LEU C 494 ARG C 499 1 6 HELIX 77 77 PRO C 504 ILE C 508 5 5 HELIX 78 78 ARG C 526 LYS C 536 1 11 HELIX 79 79 GLY C 537 PHE C 539 5 3 SHEET 1 AA 2 THR A 92 PRO A 93 0 SHEET 2 AA 2 LYS A 367 VAL A 368 -1 O VAL A 368 N THR A 92 SHEET 1 AB 6 GLY A 237 ASP A 239 0 SHEET 2 AB 6 THR A 126 TYR A 131 1 O VAL A 129 N ASN A 238 SHEET 3 AB 6 ASN A 97 ILE A 101 1 O LEU A 98 N LYS A 128 SHEET 4 AB 6 GLY A 282 LEU A 285 1 O VAL A 283 N HIS A 99 SHEET 5 AB 6 VAL A 382 SER A 389 -1 O LEU A 387 N TYR A 284 SHEET 6 AB 6 LYS A 374 PHE A 377 -1 O LYS A 374 N ILE A 388 SHEET 1 BA 2 THR B 92 PRO B 93 0 SHEET 2 BA 2 LYS B 367 VAL B 368 -1 O VAL B 368 N THR B 92 SHEET 1 BB 6 GLY B 237 ASP B 239 0 SHEET 2 BB 6 THR B 126 TYR B 131 1 O VAL B 129 N ASN B 238 SHEET 3 BB 6 ASN B 97 ILE B 101 1 O LEU B 98 N LYS B 128 SHEET 4 BB 6 GLY B 282 LEU B 285 1 O VAL B 283 N HIS B 99 SHEET 5 BB 6 SER B 381 SER B 389 -1 O LEU B 387 N TYR B 284 SHEET 6 BB 6 LYS B 374 ALA B 378 -1 O LYS B 374 N ILE B 388 SHEET 1 CA 2 THR C 92 PRO C 93 0 SHEET 2 CA 2 LYS C 367 VAL C 368 -1 O VAL C 368 N THR C 92 SHEET 1 CB 6 ASN C 238 ASP C 239 0 SHEET 2 CB 6 THR C 126 TYR C 131 1 O VAL C 129 N ASN C 238 SHEET 3 CB 6 ASN C 97 ILE C 101 1 O LEU C 98 N LYS C 128 SHEET 4 CB 6 GLY C 282 LEU C 285 1 O VAL C 283 N HIS C 99 SHEET 5 CB 6 SER C 381 SER C 389 -1 O LEU C 387 N TYR C 284 SHEET 6 CB 6 LYS C 374 ALA C 378 -1 O LYS C 374 N ILE C 388 LINK MN MN A1543 OD2 ASP A 288 1555 1555 2.51 LINK MN MN A1543 OE1 GLU A 515 1555 1555 1.92 LINK MN MN A1543 O HOH A2047 1555 1555 2.02 LINK MN MN A1543 O1B UPG A1544 1555 1555 2.15 LINK MN MN A1543 O1A UPG A1544 1555 1555 1.84 LINK MN MN A1543 O HOH A2046 1555 1555 2.02 LINK MN MN A1551 OD1 ASP A 280 1555 1555 2.36 LINK MN MN A1551 OE2 GLU B 219 1555 1555 2.48 LINK MN MN A1552 OD1 ASP C 280 1555 3655 2.11 LINK MN MN B1541 O1B UPG B1544 1555 1555 1.98 LINK MN MN B1541 OD2 ASP B 288 1555 1555 2.35 LINK MN MN B1541 OE1 GLU B 515 1555 1555 2.19 LINK MN MN B1541 O1A UPG B1544 1555 1555 2.09 LINK MN MN C1542 OD2 ASP C 288 1555 1555 2.28 LINK MN MN C1542 O HOH C2044 1555 1555 2.12 LINK MN MN C1542 O1B UPG C1544 1555 1555 2.30 LINK MN MN C1542 O1A UPG C1544 1555 1555 2.23 LINK MN MN C1542 OE1 GLU C 515 1555 1555 2.13 CISPEP 1 ASP A 163 PRO A 164 0 -1.20 CISPEP 2 ASP B 163 PRO B 164 0 -7.13 CISPEP 3 ASP C 163 PRO C 164 0 -1.67 SITE 1 AC1 5 ASP A 288 GLU A 515 UPG A1544 HOH A2046 SITE 2 AC1 5 HOH A2047 SITE 1 AC2 22 ILE A 101 TRP A 102 ILE A 103 ASN A 139 SITE 2 AC2 22 LEU A 265 SER A 269 ASP A 270 ARG A 273 SITE 3 AC2 22 TYR A 284 ASP A 286 VAL A 287 ASP A 288 SITE 4 AC2 22 ASN A 384 GLN A 385 THR A 465 GLU A 515 SITE 5 AC2 22 SER A 518 LEU A 519 TRP A 520 MN A1543 SITE 6 AC2 22 HOH A2046 HOH A2047 SITE 1 AC3 2 ASP A 280 GLU B 219 SITE 1 AC4 2 GLU A 219 ASP C 280 SITE 1 AC5 3 ASP B 288 GLU B 515 UPG B1544 SITE 1 AC6 21 ILE B 101 TRP B 102 ILE B 103 ASN B 139 SITE 2 AC6 21 LEU B 265 SER B 269 ASP B 270 ARG B 273 SITE 3 AC6 21 TYR B 284 ASP B 286 VAL B 287 ASP B 288 SITE 4 AC6 21 ASN B 384 GLN B 385 THR B 465 GLU B 515 SITE 5 AC6 21 SER B 518 LEU B 519 TRP B 520 MN B1541 SITE 6 AC6 21 HOH B2057 SITE 1 AC7 4 ASP C 288 GLU C 515 UPG C1544 HOH C2044 SITE 1 AC8 22 ILE C 101 TRP C 102 ILE C 103 ASN C 139 SITE 2 AC8 22 LEU C 265 ALA C 266 SER C 269 ASP C 270 SITE 3 AC8 22 ARG C 273 TYR C 284 ASP C 286 VAL C 287 SITE 4 AC8 22 ASP C 288 ASN C 384 GLN C 385 THR C 465 SITE 5 AC8 22 GLU C 515 SER C 518 LEU C 519 TRP C 520 SITE 6 AC8 22 MN C1542 HOH C2044 CRYST1 57.287 190.322 204.419 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004892 0.00000