HEADER TOXIN 19-DEC-07 2VKH TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF LETHAL TOXIN FROM TITLE 2 CLOSTRIDIUM SORDELLII IN COMPLEX WITH UDP-GLC AND CALCIUM ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOTOXIN L; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-546; COMPND 5 SYNONYM: LETHAL TOXIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM SORDELLII; SOURCE 3 ORGANISM_TAXID: 1505; SOURCE 4 STRAIN: 6018; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN, GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.O.P.ZIEGLER,T.JANK,K.AKTORIES,G.E.SCHULZ REVDAT 5 08-MAY-24 2VKH 1 LINK REVDAT 4 13-JUL-11 2VKH 1 VERSN REVDAT 3 24-FEB-09 2VKH 1 VERSN REVDAT 2 08-APR-08 2VKH 1 JRNL REVDAT 1 18-MAR-08 2VKH 0 JRNL AUTH M.O.P.ZIEGLER,T.JANK,K.AKTORIES,G.E.SCHULZ JRNL TITL CONFORMATIONAL CHANGES AND REACTION OF CLOSTRIDIAL JRNL TITL 2 GLYCOSYLATING TOXINS. JRNL REF J.MOL.BIOL. V. 377 1346 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18325534 JRNL DOI 10.1016/J.JMB.2007.12.065 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 92751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5916 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 2.19000 REMARK 3 B33 (A**2) : -2.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.322 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 13556 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 18311 ; 1.503 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1603 ; 6.396 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 685 ;39.147 ;25.985 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2570 ;16.094 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;11.504 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2033 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10082 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 6526 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 9470 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 574 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.256 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 8264 ; 1.003 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 13057 ; 1.372 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6032 ; 2.244 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5254 ; 3.349 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8400 -0.4290 6.9350 REMARK 3 T TENSOR REMARK 3 T11: -0.0233 T22: -0.0746 REMARK 3 T33: -0.0273 T12: 0.0043 REMARK 3 T13: 0.0365 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.2327 L22: 0.7437 REMARK 3 L33: 7.0028 L12: -0.0041 REMARK 3 L13: -2.3012 L23: 0.7007 REMARK 3 S TENSOR REMARK 3 S11: -0.2112 S12: -0.0644 S13: -0.1016 REMARK 3 S21: -0.0893 S22: 0.0234 S23: -0.0513 REMARK 3 S31: 0.3916 S32: 0.1401 S33: 0.1878 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 293 REMARK 3 RESIDUE RANGE : A 362 A 542 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3820 28.1570 29.1490 REMARK 3 T TENSOR REMARK 3 T11: -0.0350 T22: -0.0129 REMARK 3 T33: -0.0222 T12: 0.0435 REMARK 3 T13: -0.0537 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.3350 L22: 0.7312 REMARK 3 L33: 0.8768 L12: 0.1920 REMARK 3 L13: 0.2298 L23: 0.0983 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: -0.0908 S13: 0.0407 REMARK 3 S21: -0.0781 S22: -0.0160 S23: 0.0730 REMARK 3 S31: -0.1791 S32: -0.1566 S33: 0.1048 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 294 A 361 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2980 5.8890 36.5020 REMARK 3 T TENSOR REMARK 3 T11: -0.1875 T22: 0.1638 REMARK 3 T33: -0.0080 T12: -0.0120 REMARK 3 T13: 0.0183 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 6.4956 L22: 2.3775 REMARK 3 L33: 3.9468 L12: 0.6509 REMARK 3 L13: 1.4921 L23: 0.3255 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: -0.5530 S13: -0.0433 REMARK 3 S21: -0.1146 S22: -0.1399 S23: 0.1787 REMARK 3 S31: 0.1079 S32: -0.5471 S33: -0.0168 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0810 -33.5520 92.9230 REMARK 3 T TENSOR REMARK 3 T11: -0.0078 T22: -0.1490 REMARK 3 T33: -0.0381 T12: -0.0283 REMARK 3 T13: 0.0239 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.3763 L22: 0.7847 REMARK 3 L33: 6.4211 L12: 0.1623 REMARK 3 L13: -1.9701 L23: -0.8708 REMARK 3 S TENSOR REMARK 3 S11: -0.1782 S12: 0.0083 S13: -0.0416 REMARK 3 S21: 0.0222 S22: 0.0412 S23: 0.0487 REMARK 3 S31: 0.3948 S32: -0.1760 S33: 0.1371 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 93 B 293 REMARK 3 RESIDUE RANGE : B 362 B 540 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9840 -5.6530 70.3930 REMARK 3 T TENSOR REMARK 3 T11: -0.0200 T22: -0.0667 REMARK 3 T33: -0.0334 T12: -0.0329 REMARK 3 T13: -0.0400 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.2577 L22: 0.8723 REMARK 3 L33: 1.1234 L12: -0.1347 REMARK 3 L13: -0.0234 L23: -0.2088 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: 0.0216 S13: 0.0013 REMARK 3 S21: 0.0980 S22: -0.0188 S23: -0.0748 REMARK 3 S31: -0.1899 S32: 0.1326 S33: 0.0642 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 294 B 361 REMARK 3 ORIGIN FOR THE GROUP (A): 54.9140 -28.2340 63.3070 REMARK 3 T TENSOR REMARK 3 T11: -0.1445 T22: 0.1710 REMARK 3 T33: -0.0129 T12: 0.0433 REMARK 3 T13: -0.0001 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.8696 L22: 2.1214 REMARK 3 L33: 2.7609 L12: -0.0819 REMARK 3 L13: 1.4178 L23: -0.5556 REMARK 3 S TENSOR REMARK 3 S11: 0.1029 S12: 0.4341 S13: 0.0277 REMARK 3 S21: 0.0513 S22: -0.0143 S23: -0.2514 REMARK 3 S31: 0.1734 S32: 0.6081 S33: -0.0885 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 92 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0960 -63.5980 9.8810 REMARK 3 T TENSOR REMARK 3 T11: -0.0623 T22: -0.0544 REMARK 3 T33: -0.0234 T12: -0.0224 REMARK 3 T13: 0.0167 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 1.3498 L22: 1.0065 REMARK 3 L33: 5.0615 L12: -0.3730 REMARK 3 L13: -2.2427 L23: 1.0775 REMARK 3 S TENSOR REMARK 3 S11: -0.1743 S12: 0.0276 S13: -0.1078 REMARK 3 S21: -0.0541 S22: -0.0478 S23: -0.0436 REMARK 3 S31: 0.2031 S32: 0.0227 S33: 0.2221 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 93 C 293 REMARK 3 RESIDUE RANGE : C 362 C 541 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0470 -32.9890 28.8110 REMARK 3 T TENSOR REMARK 3 T11: -0.0650 T22: -0.0270 REMARK 3 T33: -0.0198 T12: -0.0148 REMARK 3 T13: -0.0535 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.1630 L22: 1.0538 REMARK 3 L33: 0.8443 L12: 0.1671 REMARK 3 L13: -0.1771 L23: 0.0801 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.0645 S13: 0.0016 REMARK 3 S21: -0.0812 S22: 0.0009 S23: 0.0696 REMARK 3 S31: -0.1186 S32: -0.0399 S33: 0.0158 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 294 C 361 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0850 -54.5920 38.4120 REMARK 3 T TENSOR REMARK 3 T11: -0.1169 T22: 0.0284 REMARK 3 T33: 0.0383 T12: -0.0651 REMARK 3 T13: 0.0006 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 3.4591 L22: 1.2276 REMARK 3 L33: 2.7722 L12: 0.3628 REMARK 3 L13: 0.9724 L23: 0.1837 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: -0.2234 S13: -0.0629 REMARK 3 S21: -0.0034 S22: -0.0929 S23: 0.1764 REMARK 3 S31: 0.2229 S32: -0.4262 S33: 0.0610 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95620 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 69.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.58500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 94.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 94.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 13 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ILE 289 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, VAL 13 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ILE 289 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN C, VAL 13 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ILE 289 TO MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 522 REMARK 465 ASN A 523 REMARK 465 GLN A 524 REMARK 465 LEU A 543 REMARK 465 GLY A 544 REMARK 465 GLU A 545 REMARK 465 ASP A 546 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 TRP B 520 REMARK 465 SER B 521 REMARK 465 PHE B 522 REMARK 465 ASN B 523 REMARK 465 GLN B 524 REMARK 465 GLY B 541 REMARK 465 ALA B 542 REMARK 465 LEU B 543 REMARK 465 GLY B 544 REMARK 465 GLU B 545 REMARK 465 ASP B 546 REMARK 465 SER C 521 REMARK 465 PHE C 522 REMARK 465 ASN C 523 REMARK 465 GLN C 524 REMARK 465 ALA C 542 REMARK 465 LEU C 543 REMARK 465 GLY C 544 REMARK 465 GLU C 545 REMARK 465 ASP C 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 17 -7.86 73.54 REMARK 500 ALA A 135 46.69 -147.22 REMARK 500 GLU A 244 -73.43 -71.46 REMARK 500 PHE A 246 -18.82 -49.67 REMARK 500 ASP A 364 -138.82 50.59 REMARK 500 ASN A 380 -1.75 74.30 REMARK 500 SER A 469 -1.70 -141.35 REMARK 500 ASN A 487 12.28 -141.97 REMARK 500 THR A 489 -32.28 -130.34 REMARK 500 LEU A 511 51.35 -99.30 REMARK 500 TRP A 520 63.15 -112.20 REMARK 500 GLU A 540 77.55 -108.40 REMARK 500 PHE B 17 -6.69 68.33 REMARK 500 GLU B 165 46.09 -140.17 REMARK 500 PHE B 166 39.85 -79.97 REMARK 500 ASP B 167 -166.85 -70.92 REMARK 500 PHE B 200 131.11 -33.23 REMARK 500 GLU B 244 -70.47 -74.79 REMARK 500 ASP B 364 -141.64 51.02 REMARK 500 ASN B 380 18.88 57.95 REMARK 500 GLU B 420 69.24 -109.48 REMARK 500 ASP B 461 -13.39 77.75 REMARK 500 SER B 469 -8.23 -143.46 REMARK 500 ASN B 487 12.79 -142.68 REMARK 500 VAL C 4 140.43 -38.32 REMARK 500 PHE C 17 -5.00 78.79 REMARK 500 TYR C 63 73.99 -112.52 REMARK 500 PRO C 164 -93.71 -104.86 REMARK 500 GLU C 165 40.46 -97.73 REMARK 500 ASN C 242 -64.12 -93.72 REMARK 500 PHE C 246 -14.93 -46.02 REMARK 500 ALA C 247 45.43 -77.83 REMARK 500 TRP C 263 24.20 44.23 REMARK 500 ASP C 364 -126.50 40.81 REMARK 500 ASN C 380 0.54 84.85 REMARK 500 SER C 469 -16.84 -144.77 REMARK 500 ASP C 486 20.85 -145.58 REMARK 500 SER C 488 113.77 -37.58 REMARK 500 LEU C 511 58.96 -91.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1543 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 288 OD2 REMARK 620 2 GLU A 515 OE1 74.4 REMARK 620 3 SER A 518 OG 86.2 73.4 REMARK 620 4 UPG A1544 O1B 142.5 135.2 83.3 REMARK 620 5 UPG A1544 O1A 75.1 148.5 112.4 75.9 REMARK 620 6 HOH A2064 O 136.8 68.4 102.9 80.7 134.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1543 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 288 OD2 REMARK 620 2 GLU B 515 OE1 67.1 REMARK 620 3 SER B 518 OG 86.5 84.0 REMARK 620 4 UPG B1544 O1A 75.7 142.4 99.6 REMARK 620 5 UPG B1544 O1B 135.8 147.0 76.0 68.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1543 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 288 OD2 REMARK 620 2 GLU C 515 OE1 66.6 REMARK 620 3 SER C 518 OG 90.3 81.8 REMARK 620 4 UPG C1544 O1B 145.1 140.2 76.6 REMARK 620 5 UPG C1544 O1A 78.6 144.6 105.0 74.0 REMARK 620 6 HOH C2044 O 69.5 73.3 152.5 130.5 89.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A1544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG B1544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C1543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG C1544 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VL8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF LETHAL TOXIN FROM REMARK 900 CLOSTRIDIUM SORDELLII IN COMPLEX WITH UDP, CASTANOSPERMINE AND REMARK 900 CALCIUM ION REMARK 900 RELATED ID: 2VKD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF LETHAL TOXIN FROM REMARK 900 CLOSTRIDIUM SORDELLII IN COMPLEX WITH UDP-GLC AND MANGANESE ION DBREF 2VKH A 1 546 UNP Q46342 Q46342_CLOSO 1 546 DBREF 2VKH B 1 546 UNP Q46342 Q46342_CLOSO 1 546 DBREF 2VKH C 1 546 UNP Q46342 Q46342_CLOSO 1 546 SEQADV 2VKH ALA A 13 UNP Q46342 VAL 13 ENGINEERED MUTATION SEQADV 2VKH MET A 289 UNP Q46342 ILE 289 ENGINEERED MUTATION SEQADV 2VKH ALA B 13 UNP Q46342 VAL 13 ENGINEERED MUTATION SEQADV 2VKH MET B 289 UNP Q46342 ILE 289 ENGINEERED MUTATION SEQADV 2VKH ALA C 13 UNP Q46342 VAL 13 ENGINEERED MUTATION SEQADV 2VKH MET C 289 UNP Q46342 ILE 289 ENGINEERED MUTATION SEQRES 1 A 546 MET ASN LEU VAL ASN LYS ALA GLN LEU GLN LYS MET ALA SEQRES 2 A 546 TYR VAL LYS PHE ARG ILE GLN GLU ASP GLU TYR VAL ALA SEQRES 3 A 546 ILE LEU ASN ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 A 546 SER SER VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 A 546 ASN ASN LEU THR ASP ASN TYR LEU ASN THR TYR LYS LYS SEQRES 6 A 546 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 A 546 LEU THR MET GLU VAL LEU GLU LEU LYS ASN ASN SER LEU SEQRES 8 A 546 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 A 546 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 A 546 TRP LYS ASP VAL ASN SER ASP TYR THR VAL LYS VAL PHE SEQRES 11 A 546 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 A 546 THR ILE VAL GLU SER ALA THR ASN ASN THR LEU GLU SER SEQRES 13 A 546 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASP TYR ASN SEQRES 14 A 546 LYS PHE TYR ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 A 546 GLN LYS HIS PHE ILE ASP TYR TYR LYS SER GLN ILE GLU SEQRES 16 A 546 GLU ASN PRO GLU PHE ILE ILE ASP ASN ILE ILE LYS THR SEQRES 17 A 546 TYR LEU SER ASN GLU TYR SER LYS ASP LEU GLU ALA LEU SEQRES 18 A 546 ASN LYS TYR ILE GLU GLU SER LEU ASN LYS ILE THR ALA SEQRES 19 A 546 ASN ASN GLY ASN ASP ILE ARG ASN LEU GLU LYS PHE ALA SEQRES 20 A 546 ASP GLU ASP LEU VAL ARG LEU TYR ASN GLN GLU LEU VAL SEQRES 21 A 546 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 A 546 ILE SER MET LEU LYS GLU ASP GLY GLY VAL TYR LEU ASP SEQRES 23 A 546 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE LYS SEQRES 24 A 546 SER ILE ASN LYS PRO ASP SER ILE THR ASN THR SER TRP SEQRES 25 A 546 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 A 546 TYR ILE PRO GLY TYR THR SER LYS ASN PHE ASP MET LEU SEQRES 27 A 546 ASP GLU GLU VAL GLN ARG SER PHE GLU SER ALA LEU SER SEQRES 28 A 546 SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU ASP SEQRES 29 A 546 ASP ILE LYS VAL SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 A 546 ALA ASN ASN SER VAL ILE ASN GLN ALA LEU ILE SER LEU SEQRES 31 A 546 LYS ASP SER TYR CYS SER ASP LEU VAL ILE ASN GLN ILE SEQRES 32 A 546 LYS ASN ARG TYR LYS ILE LEU ASN ASP ASN LEU ASN PRO SEQRES 33 A 546 SER ILE ASN GLU GLY THR ASP PHE ASN THR THR MET LYS SEQRES 34 A 546 ILE PHE SER ASP LYS LEU ALA SER ILE SER ASN GLU ASP SEQRES 35 A 546 ASN MET MET PHE MET ILE LYS ILE THR ASN TYR LEU LYS SEQRES 36 A 546 VAL GLY PHE ALA PRO ASP VAL ARG SER THR ILE ASN LEU SEQRES 37 A 546 SER GLY PRO GLY VAL TYR THR GLY ALA TYR GLN ASP LEU SEQRES 38 A 546 LEU MET PHE LYS ASP ASN SER THR ASN ILE HIS LEU LEU SEQRES 39 A 546 GLU PRO GLU LEU ARG ASN PHE GLU PHE PRO LYS THR LYS SEQRES 40 A 546 ILE SER GLN LEU THR GLU GLN GLU ILE THR SER LEU TRP SEQRES 41 A 546 SER PHE ASN GLN ALA ARG ALA LYS SER GLN PHE GLU GLU SEQRES 42 A 546 TYR LYS LYS GLY TYR PHE GLU GLY ALA LEU GLY GLU ASP SEQRES 1 B 546 MET ASN LEU VAL ASN LYS ALA GLN LEU GLN LYS MET ALA SEQRES 2 B 546 TYR VAL LYS PHE ARG ILE GLN GLU ASP GLU TYR VAL ALA SEQRES 3 B 546 ILE LEU ASN ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 B 546 SER SER VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 B 546 ASN ASN LEU THR ASP ASN TYR LEU ASN THR TYR LYS LYS SEQRES 6 B 546 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 B 546 LEU THR MET GLU VAL LEU GLU LEU LYS ASN ASN SER LEU SEQRES 8 B 546 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 B 546 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 B 546 TRP LYS ASP VAL ASN SER ASP TYR THR VAL LYS VAL PHE SEQRES 11 B 546 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 B 546 THR ILE VAL GLU SER ALA THR ASN ASN THR LEU GLU SER SEQRES 13 B 546 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASP TYR ASN SEQRES 14 B 546 LYS PHE TYR ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 B 546 GLN LYS HIS PHE ILE ASP TYR TYR LYS SER GLN ILE GLU SEQRES 16 B 546 GLU ASN PRO GLU PHE ILE ILE ASP ASN ILE ILE LYS THR SEQRES 17 B 546 TYR LEU SER ASN GLU TYR SER LYS ASP LEU GLU ALA LEU SEQRES 18 B 546 ASN LYS TYR ILE GLU GLU SER LEU ASN LYS ILE THR ALA SEQRES 19 B 546 ASN ASN GLY ASN ASP ILE ARG ASN LEU GLU LYS PHE ALA SEQRES 20 B 546 ASP GLU ASP LEU VAL ARG LEU TYR ASN GLN GLU LEU VAL SEQRES 21 B 546 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 B 546 ILE SER MET LEU LYS GLU ASP GLY GLY VAL TYR LEU ASP SEQRES 23 B 546 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE LYS SEQRES 24 B 546 SER ILE ASN LYS PRO ASP SER ILE THR ASN THR SER TRP SEQRES 25 B 546 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 B 546 TYR ILE PRO GLY TYR THR SER LYS ASN PHE ASP MET LEU SEQRES 27 B 546 ASP GLU GLU VAL GLN ARG SER PHE GLU SER ALA LEU SER SEQRES 28 B 546 SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU ASP SEQRES 29 B 546 ASP ILE LYS VAL SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 B 546 ALA ASN ASN SER VAL ILE ASN GLN ALA LEU ILE SER LEU SEQRES 31 B 546 LYS ASP SER TYR CYS SER ASP LEU VAL ILE ASN GLN ILE SEQRES 32 B 546 LYS ASN ARG TYR LYS ILE LEU ASN ASP ASN LEU ASN PRO SEQRES 33 B 546 SER ILE ASN GLU GLY THR ASP PHE ASN THR THR MET LYS SEQRES 34 B 546 ILE PHE SER ASP LYS LEU ALA SER ILE SER ASN GLU ASP SEQRES 35 B 546 ASN MET MET PHE MET ILE LYS ILE THR ASN TYR LEU LYS SEQRES 36 B 546 VAL GLY PHE ALA PRO ASP VAL ARG SER THR ILE ASN LEU SEQRES 37 B 546 SER GLY PRO GLY VAL TYR THR GLY ALA TYR GLN ASP LEU SEQRES 38 B 546 LEU MET PHE LYS ASP ASN SER THR ASN ILE HIS LEU LEU SEQRES 39 B 546 GLU PRO GLU LEU ARG ASN PHE GLU PHE PRO LYS THR LYS SEQRES 40 B 546 ILE SER GLN LEU THR GLU GLN GLU ILE THR SER LEU TRP SEQRES 41 B 546 SER PHE ASN GLN ALA ARG ALA LYS SER GLN PHE GLU GLU SEQRES 42 B 546 TYR LYS LYS GLY TYR PHE GLU GLY ALA LEU GLY GLU ASP SEQRES 1 C 546 MET ASN LEU VAL ASN LYS ALA GLN LEU GLN LYS MET ALA SEQRES 2 C 546 TYR VAL LYS PHE ARG ILE GLN GLU ASP GLU TYR VAL ALA SEQRES 3 C 546 ILE LEU ASN ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 C 546 SER SER VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 C 546 ASN ASN LEU THR ASP ASN TYR LEU ASN THR TYR LYS LYS SEQRES 6 C 546 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 C 546 LEU THR MET GLU VAL LEU GLU LEU LYS ASN ASN SER LEU SEQRES 8 C 546 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 C 546 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 C 546 TRP LYS ASP VAL ASN SER ASP TYR THR VAL LYS VAL PHE SEQRES 11 C 546 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 C 546 THR ILE VAL GLU SER ALA THR ASN ASN THR LEU GLU SER SEQRES 13 C 546 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASP TYR ASN SEQRES 14 C 546 LYS PHE TYR ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 C 546 GLN LYS HIS PHE ILE ASP TYR TYR LYS SER GLN ILE GLU SEQRES 16 C 546 GLU ASN PRO GLU PHE ILE ILE ASP ASN ILE ILE LYS THR SEQRES 17 C 546 TYR LEU SER ASN GLU TYR SER LYS ASP LEU GLU ALA LEU SEQRES 18 C 546 ASN LYS TYR ILE GLU GLU SER LEU ASN LYS ILE THR ALA SEQRES 19 C 546 ASN ASN GLY ASN ASP ILE ARG ASN LEU GLU LYS PHE ALA SEQRES 20 C 546 ASP GLU ASP LEU VAL ARG LEU TYR ASN GLN GLU LEU VAL SEQRES 21 C 546 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 C 546 ILE SER MET LEU LYS GLU ASP GLY GLY VAL TYR LEU ASP SEQRES 23 C 546 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE LYS SEQRES 24 C 546 SER ILE ASN LYS PRO ASP SER ILE THR ASN THR SER TRP SEQRES 25 C 546 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 C 546 TYR ILE PRO GLY TYR THR SER LYS ASN PHE ASP MET LEU SEQRES 27 C 546 ASP GLU GLU VAL GLN ARG SER PHE GLU SER ALA LEU SER SEQRES 28 C 546 SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU ASP SEQRES 29 C 546 ASP ILE LYS VAL SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 C 546 ALA ASN ASN SER VAL ILE ASN GLN ALA LEU ILE SER LEU SEQRES 31 C 546 LYS ASP SER TYR CYS SER ASP LEU VAL ILE ASN GLN ILE SEQRES 32 C 546 LYS ASN ARG TYR LYS ILE LEU ASN ASP ASN LEU ASN PRO SEQRES 33 C 546 SER ILE ASN GLU GLY THR ASP PHE ASN THR THR MET LYS SEQRES 34 C 546 ILE PHE SER ASP LYS LEU ALA SER ILE SER ASN GLU ASP SEQRES 35 C 546 ASN MET MET PHE MET ILE LYS ILE THR ASN TYR LEU LYS SEQRES 36 C 546 VAL GLY PHE ALA PRO ASP VAL ARG SER THR ILE ASN LEU SEQRES 37 C 546 SER GLY PRO GLY VAL TYR THR GLY ALA TYR GLN ASP LEU SEQRES 38 C 546 LEU MET PHE LYS ASP ASN SER THR ASN ILE HIS LEU LEU SEQRES 39 C 546 GLU PRO GLU LEU ARG ASN PHE GLU PHE PRO LYS THR LYS SEQRES 40 C 546 ILE SER GLN LEU THR GLU GLN GLU ILE THR SER LEU TRP SEQRES 41 C 546 SER PHE ASN GLN ALA ARG ALA LYS SER GLN PHE GLU GLU SEQRES 42 C 546 TYR LYS LYS GLY TYR PHE GLU GLY ALA LEU GLY GLU ASP HET CA A1543 1 HET UPG A1544 36 HET CA B1543 1 HET UPG B1544 36 HET CA C1543 1 HET UPG C1544 36 HETNAM CA CALCIUM ION HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 4 CA 3(CA 2+) FORMUL 5 UPG 3(C15 H24 N2 O17 P2) FORMUL 10 HOH *199(H2 O) HELIX 1 1 ASN A 5 ALA A 13 1 9 HELIX 2 2 GLU A 21 ASN A 36 1 16 HELIX 3 3 SER A 41 TYR A 63 1 23 HELIX 4 4 ARG A 68 ASN A 89 1 22 HELIX 5 5 ASN A 108 ASN A 122 1 15 HELIX 6 6 LEU A 137 ARG A 158 1 22 HELIX 7 7 GLU A 159 LEU A 161 5 3 HELIX 8 8 ASP A 167 ASN A 197 1 31 HELIX 9 9 ILE A 201 TYR A 214 1 14 HELIX 10 10 ASP A 217 ALA A 234 1 18 HELIX 11 11 ASP A 248 GLU A 261 1 14 HELIX 12 12 ASN A 264 GLY A 281 1 18 HELIX 13 13 THR A 308 GLU A 325 1 18 HELIX 14 14 ASN A 334 LEU A 338 5 5 HELIX 15 15 ASP A 339 SER A 352 1 14 HELIX 16 16 ASP A 355 GLU A 358 5 4 HELIX 17 17 SER A 393 GLU A 420 1 28 HELIX 18 18 ASP A 423 ILE A 438 1 16 HELIX 19 19 ASN A 443 THR A 451 1 9 HELIX 20 20 ASN A 452 LYS A 455 5 4 HELIX 21 21 ARG A 463 SER A 469 1 7 HELIX 22 22 GLY A 470 MET A 483 1 14 HELIX 23 23 LEU A 494 ARG A 499 1 6 HELIX 24 24 PRO A 504 ILE A 508 5 5 HELIX 25 25 THR A 512 LEU A 519 1 8 HELIX 26 26 LYS A 528 GLY A 537 1 10 HELIX 27 27 ASN B 5 ALA B 13 1 9 HELIX 28 28 GLU B 21 ASN B 36 1 16 HELIX 29 29 SER B 41 TYR B 63 1 23 HELIX 30 30 ARG B 68 SER B 90 1 23 HELIX 31 31 ASN B 108 ASN B 122 1 15 HELIX 32 32 LEU B 137 PHE B 157 1 21 HELIX 33 33 ASP B 167 ASN B 197 1 31 HELIX 34 34 ILE B 201 TYR B 214 1 14 HELIX 35 35 ASP B 217 ALA B 234 1 18 HELIX 36 36 ARG B 241 LEU B 243 5 3 HELIX 37 37 ASP B 248 GLU B 261 1 14 HELIX 38 38 ASN B 264 GLY B 281 1 18 HELIX 39 39 THR B 308 LYS B 324 1 17 HELIX 40 40 ASN B 334 LEU B 338 5 5 HELIX 41 41 ASP B 339 SER B 352 1 14 HELIX 42 42 ASP B 355 ILE B 359 5 5 HELIX 43 43 SER B 393 GLU B 420 1 28 HELIX 44 44 ASP B 423 ILE B 438 1 16 HELIX 45 45 ASN B 443 THR B 451 1 9 HELIX 46 46 ASN B 452 LYS B 455 5 4 HELIX 47 47 GLY B 470 PHE B 484 1 15 HELIX 48 48 LEU B 494 ARG B 499 1 6 HELIX 49 49 PRO B 504 ILE B 508 5 5 HELIX 50 50 THR B 512 SER B 518 1 7 HELIX 51 51 LYS B 528 GLY B 537 1 10 HELIX 52 52 ASN C 5 ALA C 13 1 9 HELIX 53 53 GLU C 21 ASN C 36 1 16 HELIX 54 54 SER C 41 TYR C 63 1 23 HELIX 55 55 ARG C 68 ASN C 89 1 22 HELIX 56 56 ASN C 108 ASN C 122 1 15 HELIX 57 57 LEU C 137 GLU C 155 1 19 HELIX 58 58 ASP C 167 ASN C 197 1 31 HELIX 59 59 ILE C 201 SER C 215 1 15 HELIX 60 60 ASP C 217 ASN C 235 1 19 HELIX 61 61 ASP C 248 GLU C 261 1 14 HELIX 62 62 ASN C 264 GLY C 281 1 18 HELIX 63 63 THR C 308 GLU C 325 1 18 HELIX 64 64 ASN C 334 LEU C 338 5 5 HELIX 65 65 ASP C 339 LEU C 350 1 12 HELIX 66 66 ASP C 355 ILE C 359 5 5 HELIX 67 67 SER C 393 GLU C 420 1 28 HELIX 68 68 ASP C 423 SER C 437 1 15 HELIX 69 69 ASN C 443 THR C 451 1 9 HELIX 70 70 ASN C 452 VAL C 456 5 5 HELIX 71 71 ARG C 463 SER C 469 1 7 HELIX 72 72 GLY C 470 PHE C 484 1 15 HELIX 73 73 LEU C 494 ARG C 499 1 6 HELIX 74 74 PRO C 504 ILE C 508 5 5 HELIX 75 75 THR C 512 TRP C 520 1 9 HELIX 76 76 LYS C 528 GLY C 537 1 10 SHEET 1 AA 2 THR A 92 PRO A 93 0 SHEET 2 AA 2 LYS A 367 VAL A 368 -1 O VAL A 368 N THR A 92 SHEET 1 AB 6 GLY A 237 ASP A 239 0 SHEET 2 AB 6 THR A 126 TYR A 131 1 O VAL A 129 N ASN A 238 SHEET 3 AB 6 ASN A 97 ILE A 101 1 O LEU A 98 N LYS A 128 SHEET 4 AB 6 GLY A 282 LEU A 285 1 O VAL A 283 N HIS A 99 SHEET 5 AB 6 SER A 381 SER A 389 -1 O LEU A 387 N TYR A 284 SHEET 6 AB 6 LYS A 374 ALA A 378 -1 O LYS A 374 N ILE A 388 SHEET 1 AC 2 GLY A 292 ILE A 293 0 SHEET 2 AC 2 PHE A 360 LEU A 361 -1 O LEU A 361 N GLY A 292 SHEET 1 BA 2 THR B 92 PRO B 93 0 SHEET 2 BA 2 LYS B 367 VAL B 368 -1 O VAL B 368 N THR B 92 SHEET 1 BB 6 GLY B 237 ASP B 239 0 SHEET 2 BB 6 THR B 126 TYR B 131 1 O VAL B 129 N ASN B 238 SHEET 3 BB 6 ASN B 97 ILE B 101 1 O LEU B 98 N LYS B 128 SHEET 4 BB 6 GLY B 282 LEU B 285 1 O VAL B 283 N HIS B 99 SHEET 5 BB 6 SER B 381 SER B 389 -1 O LEU B 387 N TYR B 284 SHEET 6 BB 6 LYS B 374 ALA B 378 -1 O LYS B 374 N ILE B 388 SHEET 1 CA 2 THR C 92 PRO C 93 0 SHEET 2 CA 2 LYS C 367 VAL C 368 -1 O VAL C 368 N THR C 92 SHEET 1 CB 6 ASN C 238 ASP C 239 0 SHEET 2 CB 6 THR C 126 TYR C 131 1 O VAL C 129 N ASN C 238 SHEET 3 CB 6 ASN C 97 ILE C 101 1 O LEU C 98 N LYS C 128 SHEET 4 CB 6 GLY C 282 LEU C 285 1 O VAL C 283 N HIS C 99 SHEET 5 CB 6 SER C 381 SER C 389 -1 O LEU C 387 N TYR C 284 SHEET 6 CB 6 LYS C 374 ALA C 378 -1 O LYS C 374 N ILE C 388 LINK OD2 ASP A 288 CA CA A1543 1555 1555 2.35 LINK OE1 GLU A 515 CA CA A1543 1555 1555 2.66 LINK OG SER A 518 CA CA A1543 1555 1555 2.40 LINK CA CA A1543 O1B UPG A1544 1555 1555 2.48 LINK CA CA A1543 O1A UPG A1544 1555 1555 2.36 LINK CA CA A1543 O HOH A2064 1555 1555 2.28 LINK OD2 ASP B 288 CA CA B1543 1555 1555 2.66 LINK OE1 GLU B 515 CA CA B1543 1555 1555 2.58 LINK OG SER B 518 CA CA B1543 1555 1555 2.58 LINK CA CA B1543 O1A UPG B1544 1555 1555 2.47 LINK CA CA B1543 O1B UPG B1544 1555 1555 2.61 LINK OD2 ASP C 288 CA CA C1543 1555 1555 2.54 LINK OE1 GLU C 515 CA CA C1543 1555 1555 2.53 LINK OG SER C 518 CA CA C1543 1555 1555 2.37 LINK CA CA C1543 O1B UPG C1544 1555 1555 2.51 LINK CA CA C1543 O1A UPG C1544 1555 1555 2.50 LINK CA CA C1543 O HOH C2044 1555 1555 2.45 CISPEP 1 ASP A 163 PRO A 164 0 -7.31 CISPEP 2 ASP B 163 PRO B 164 0 -20.23 CISPEP 3 ASP C 163 PRO C 164 0 -9.77 SITE 1 AC1 5 ASP A 288 GLU A 515 SER A 518 UPG A1544 SITE 2 AC1 5 HOH A2064 SITE 1 AC2 20 ILE A 101 TRP A 102 ILE A 103 ASN A 139 SITE 2 AC2 20 LEU A 265 ALA A 266 SER A 269 ASP A 270 SITE 3 AC2 20 ARG A 273 TYR A 284 ASP A 286 VAL A 287 SITE 4 AC2 20 ASP A 288 ASN A 384 GLN A 385 THR A 465 SITE 5 AC2 20 SER A 518 CA A1543 HOH A2034 HOH A2064 SITE 1 AC3 4 ASP B 288 GLU B 515 SER B 518 UPG B1544 SITE 1 AC4 20 ILE B 101 TRP B 102 ILE B 103 ASN B 139 SITE 2 AC4 20 ALA B 266 SER B 269 ASP B 270 ARG B 273 SITE 3 AC4 20 TYR B 284 ASP B 286 VAL B 287 ASP B 288 SITE 4 AC4 20 ASN B 384 GLN B 385 THR B 465 GLY B 470 SITE 5 AC4 20 SER B 518 CA B1543 HOH B2031 HOH B2060 SITE 1 AC5 5 ASP C 288 GLU C 515 SER C 518 UPG C1544 SITE 2 AC5 5 HOH C2044 SITE 1 AC6 21 ILE C 101 TRP C 102 ILE C 103 ASN C 139 SITE 2 AC6 21 LEU C 265 ALA C 266 SER C 269 ASP C 270 SITE 3 AC6 21 ARG C 273 TYR C 284 ASP C 286 VAL C 287 SITE 4 AC6 21 ASP C 288 ASN C 384 GLN C 385 THR C 465 SITE 5 AC6 21 SER C 518 CA C1543 HOH C2042 HOH C2044 SITE 6 AC6 21 HOH C2075 CRYST1 57.170 188.590 203.100 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017492 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004924 0.00000