HEADER    TRANSFERASE                             19-DEC-07   2VKI              
TITLE     STRUCTURE OF THE PDK1 PH DOMAIN K465E MUTANT                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 3-PHOPSHOINOSITIDE DEPENDENT PROTEIN KINASE 1;             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: PLECKSTRIN HOMOLOGY (PH) DOMAIN, RESIDUES 409-556;         
COMPND   5 SYNONYM: HPDK1;                                                      
COMPND   6 EC: 2.7.11.1;                                                        
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PGEX6P1                                   
KEYWDS    PLECKSTRIN HOMOLOGY, TRANSFERASE, CANCER, DIABETES                    
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    D.KOMANDER,J.R.BAYASCAS,M.DEAK,D.R.ALESSI,D.M.F.VAN AALTEN            
REVDAT   4   13-DEC-23 2VKI    1       REMARK                                   
REVDAT   3   13-JUL-11 2VKI    1       VERSN                                    
REVDAT   2   24-FEB-09 2VKI    1       VERSN                                    
REVDAT   1   13-MAY-08 2VKI    0                                                
JRNL        AUTH   J.R.BAYASCAS,S.WULLSCHLEGER,K.SAKAMOTO,J.M.GARCIA-MARTINEZ,  
JRNL        AUTH 2 C.CLACHER,D.KOMANDER,D.M.F.VAN AALTEN,K.M.BOINI,F.LANG,      
JRNL        AUTH 3 C.LIPINA,L.LOGIE,C.SUTHERLAND,J.A.CHUDEK,J.A.VAN DIEPEN,     
JRNL        AUTH 4 P.J.VOSHOL,J.M.LUCOCQ,D.R.ALESSI                             
JRNL        TITL   MUTATION OF THE PDK1 PH DOMAIN INHIBITS PROTEIN KINASE       
JRNL        TITL 2 B/AKT, LEADING TO SMALL SIZE AND INSULIN RESISTANCE.         
JRNL        REF    MOL.CELL.BIOL.                V.  28  3258 2008              
JRNL        REFN                   ISSN 0270-7306                               
JRNL        PMID   18347057                                                     
JRNL        DOI    10.1128/MCB.02032-07                                         
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.1.24                                        
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 25.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 14309                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.175                           
REMARK   3   R VALUE            (WORKING SET) : 0.173                           
REMARK   3   FREE R VALUE                     : 0.215                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 609                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.80                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.84                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1000                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2680                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 45                           
REMARK   3   BIN FREE R VALUE                    : 0.3480                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1172                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 11                                      
REMARK   3   SOLVENT ATOMS            : 112                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   B VALUE TYPE : LIKELY RESIDUAL                                     
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 21.05                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.12000                                              
REMARK   3    B22 (A**2) : -0.64000                                             
REMARK   3    B33 (A**2) : 0.52000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.121         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.120         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.084         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.765         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.966                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.952                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  1242 ; 0.016 ; 0.021       
REMARK   3   BOND LENGTHS OTHERS               (A):  1101 ; 0.002 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  1677 ; 1.681 ; 1.944       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  2566 ; 0.904 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   138 ; 7.298 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   170 ; 0.106 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1354 ; 0.010 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   271 ; 0.011 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   215 ; 0.216 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  1257 ; 0.253 ; 0.200       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):   730 ; 0.086 ; 0.200       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):    89 ; 0.160 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    17 ; 0.190 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):    79 ; 0.312 ; 0.200       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):    12 ; 0.117 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):   700 ; 0.983 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  1137 ; 1.780 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):   542 ; 2.542 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):   540 ; 4.059 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 2                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 3                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   414        A   466                          
REMARK   3    RESIDUE RANGE :   A   472        A   487                          
REMARK   3    RESIDUE RANGE :   A   494        A   543                          
REMARK   3    ORIGIN FOR THE GROUP (A):   1.9703  17.6963  11.1860              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0395 T22:   0.0345                                     
REMARK   3      T33:   0.0428 T12:  -0.0056                                     
REMARK   3      T13:  -0.0072 T23:  -0.0087                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.3314 L22:   1.1483                                     
REMARK   3      L33:   0.8004 L12:  -0.1515                                     
REMARK   3      L13:   0.1228 L23:  -0.1352                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0030 S12:  -0.0485 S13:  -0.0011                       
REMARK   3      S21:   0.0306 S22:   0.0445 S23:  -0.0373                       
REMARK   3      S31:  -0.0251 S32:   0.0218 S33:  -0.0415                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 4                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   410        A   413                          
REMARK   3    RESIDUE RANGE :   A   467        A   471                          
REMARK   3    RESIDUE RANGE :   A   544        A   549                          
REMARK   3    RESIDUE RANGE :   A   488        A   493                          
REMARK   3    ORIGIN FOR THE GROUP (A):  -0.7469  16.3049  12.3078              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0117 T22:   0.0128                                     
REMARK   3      T33:   0.0388 T12:   0.0080                                     
REMARK   3      T13:  -0.0076 T23:  -0.0209                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.5356 L22:   0.2234                                     
REMARK   3      L33:   1.0095 L12:  -0.2601                                     
REMARK   3      L13:   0.1261 L23:  -0.0010                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0394 S12:  -0.0679 S13:   0.0286                       
REMARK   3      S21:   0.0022 S22:   0.0407 S23:   0.0228                       
REMARK   3      S31:   0.0028 S32:  -0.0211 S33:  -0.0013                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : BABINET MODEL WITH MASK                              
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS. DISORDERED RESIDUES WERE MODELLED AS ALA OR WITH OCCU    
REMARK   3  0.01. THE C-TERMINUS IS DISORDERED.                                 
REMARK   4                                                                      
REMARK   4 2VKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-07.                  
REMARK 100 THE DEPOSITION ID IS D_1290034836.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 30-JUN-04                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU MICROMAX-007                
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU IMAGE PLATE                 
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 14950                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.800                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 25.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 2.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY                : 4.500                              
REMARK 200  R MERGE                    (I) : 0.06000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 10.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.86                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.30                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.55000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.300                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: PDB ENTRY 1W1D                                       
REMARK 200                                                                      
REMARK 200 REMARK: NONE                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 44.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULPHATE, 0.1 M TRIS       
REMARK 280  HYDROCHLORIDE [PH 8.5] 30 % (W/V) PEG 4000                          
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       17.00450            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       33.90100            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       33.52850            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       33.90100            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       17.00450            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       33.52850            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 400                                                                      
REMARK 400 COMPOUND                                                             
REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 465 TO GLU                        
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A   409                                                      
REMARK 465     HIS A   550                                                      
REMARK 465     PRO A   551                                                      
REMARK 465     ASP A   552                                                      
REMARK 465     ALA A   553                                                      
REMARK 465     ALA A   554                                                      
REMARK 465     VAL A   555                                                      
REMARK 465     GLN A   556                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLN A 429    CG   CD   OE1  NE2                                  
REMARK 470     GLN A 548    CG   CD   OE1  NE2                                  
REMARK 470     SER A 549    CA   C    O    CB   OG                              
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ASP A 464   CB  -  CG  -  OD1 ANGL. DEV. =   5.4 DEGREES          
REMARK 500    ARG A 472   NE  -  CZ  -  NH2 ANGL. DEV. =  -3.6 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLN A 429       52.95    -99.73                                   
REMARK 500    GLU A 480      143.53    -39.20                                   
REMARK 500    GLN A 548      -70.98    121.69                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 700                                                                      
REMARK 700 SHEET                                                                
REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN               
REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW,          
REMARK 700 TWO SHEETS ARE DEFINED.                                              
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1549                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1550                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1UU8   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1          
REMARK 900 RELATED ID: 1OKY   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE  
REMARK 900 RELATED ID: 1Z5M   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF N1-[3-[[5-BROMO-2-[[ 3-[(1-                     
REMARK 900 PYRROLIDINYLCARBONYL)AMINO]PHENYL]AMINO ]-4-PYRIMIDINYL]AMINO]       
REMARK 900 PROPYL]-2,2- DIMETHYLPROPANEDIAMIDECOMPLEXED WITH HUMAN PDK1         
REMARK 900 RELATED ID: 1UU9   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3          
REMARK 900 RELATED ID: 1OKZ   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01         
REMARK 900 RELATED ID: 1W1D   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND  
REMARK 900 TO INOSITOL (1, 3,4,5)-TETRAKISPHOSPHATE                             
REMARK 900 RELATED ID: 1H1W   RELATED DB: PDB                                   
REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN 
REMARK 900 RELATED ID: 1UU3   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531       
REMARK 900 RELATED ID: 1W1G   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND  
REMARK 900 TO DIC4- PHOSPHATIDYLINOSITOL (3,4,5)-TRISPHOSPHATE                  
REMARK 900 RELATED ID: 2BIY   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF PDK1-S241A MUTANT KINASE DOMAIN                         
REMARK 900 RELATED ID: 1W1H   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN        
REMARK 900 RELATED ID: 1UU7   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2          
REMARK 900 RELATED ID: 1UVR   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8          
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 POINT MUTATION K465E                                                 
DBREF  2VKI A  409   556  UNP    O15530   PDPK1_HUMAN    409    556             
SEQADV 2VKI GLU A  465  UNP  O15530    LYS   465 ENGINEERED MUTATION            
SEQRES   1 A  148  GLY SER ASN ILE GLU GLN TYR ILE HIS ASP LEU ASP SER          
SEQRES   2 A  148  ASN SER PHE GLU LEU ASP LEU GLN PHE SER GLU ASP GLU          
SEQRES   3 A  148  LYS ARG LEU LEU LEU GLU LYS GLN ALA GLY GLY ASN PRO          
SEQRES   4 A  148  TRP HIS GLN PHE VAL GLU ASN ASN LEU ILE LEU LYS MET          
SEQRES   5 A  148  GLY PRO VAL ASP GLU ARG LYS GLY LEU PHE ALA ARG ARG          
SEQRES   6 A  148  ARG GLN LEU LEU LEU THR GLU GLY PRO HIS LEU TYR TYR          
SEQRES   7 A  148  VAL ASP PRO VAL ASN LYS VAL LEU LYS GLY GLU ILE PRO          
SEQRES   8 A  148  TRP SER GLN GLU LEU ARG PRO GLU ALA LYS ASN PHE LYS          
SEQRES   9 A  148  THR PHE PHE VAL HIS THR PRO ASN ARG THR TYR TYR LEU          
SEQRES  10 A  148  MET ASP PRO SER GLY ASN ALA HIS LYS TRP CYS ARG LYS          
SEQRES  11 A  148  ILE GLN GLU VAL TRP ARG GLN ARG TYR GLN SER HIS PRO          
SEQRES  12 A  148  ASP ALA ALA VAL GLN                                          
HET    GOL  A1549       6                                                       
HET    SO4  A1550       5                                                       
HETNAM     GOL GLYCEROL                                                         
HETNAM     SO4 SULFATE ION                                                      
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   2  GOL    C3 H8 O3                                                     
FORMUL   3  SO4    O4 S 2-                                                      
FORMUL   4  HOH   *112(H2 O)                                                    
HELIX    1   1 ASN A  411  GLN A  414  5                                   4    
HELIX    2   2 SER A  431  ASN A  446  1                                  16    
HELIX    3   3 TRP A  448  VAL A  452  5                                   5    
HELIX    4   4 ASN A  531  GLN A  548  1                                  18    
SHEET    1  AA 6 ILE A 416  ASP A 420  0                                        
SHEET    2  AA 6 SER A 423  LEU A 426 -1  O  SER A 423   N  LEU A 419           
SHEET    3  AA 6 ILE A 457  GLU A 465 -1  O  LEU A 458   N  LEU A 426           
SHEET    4  AA 6 ARG A 472  THR A 479 -1  O  ARG A 472   N  GLU A 465           
SHEET    5  AA 6 HIS A 483  ASP A 488 -1  O  HIS A 483   N  THR A 479           
SHEET    6  AA 6 VAL A 493  ILE A 498 -1  O  VAL A 493   N  ASP A 488           
SHEET    1  AB 6 ILE A 416  ASP A 420  0                                        
SHEET    2  AB 6 SER A 423  LEU A 426 -1  O  SER A 423   N  LEU A 419           
SHEET    3  AB 6 ILE A 457  GLU A 465 -1  O  LEU A 458   N  LEU A 426           
SHEET    4  AB 6 ARG A 521  MET A 526 -1  O  MET A 526   N  ASP A 464           
SHEET    5  AB 6 THR A 513  THR A 518 -1  O  PHE A 514   N  LEU A 525           
SHEET    6  AB 6 ARG A 505  ALA A 508 -1  O  ARG A 505   N  HIS A 517           
CISPEP   1 GLY A  481    PRO A  482          0        -4.30                     
SITE     1 AC1  4 SER A 431  GLU A 432  ASP A 433  ARG A 521                    
SITE     1 AC2  3 LYS A 467  ARG A 472  ARG A 474                               
CRYST1   34.009   67.057   67.802  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.029404  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.014913  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.014749        0.00000