HEADER MEMBRANE PROTEIN 20-DEC-07 2VKO TITLE STRUCTURE OF THE SOLUBLE DOMAIN OF THE MEMBRANE PROTEIN TM1634 FROM TITLE 2 THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TM1634; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SOLUBLE DOMAIN, RESIDUES 27-128; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS SAD, TPR MOTIF, MEMBRANE PROTEIN, THERMOTOGA MARITIMA, STRUCTURAL KEYWDS 2 GENOMICS, JCSG, JOINT CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR C.J.MCCLEVERTY,L.COLUMBUS,A.KREUSCH,S.A.LESLEY,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 4 13-DEC-23 2VKO 1 REMARK REVDAT 3 24-FEB-09 2VKO 1 VERSN REVDAT 2 06-MAY-08 2VKO 1 JRNL REMARK REVDAT 1 08-APR-08 2VKO 0 JRNL AUTH C.J.MCCLEVERTY,L.COLUMBUS,A.KREUSCH,S.A.LESLEY JRNL TITL STRUCTURE AND LIGAND BINDING OF THE SOLUBLE DOMAIN OF A JRNL TITL 2 THERMOTOGA MARITIMA MEMBRANE PROTEIN OF UNKNOWN FUNCTION JRNL TITL 3 TM1634. JRNL REF PROTEIN SCI. V. 17 869 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18369189 JRNL DOI 10.1110/PS.083432208 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 48429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2595 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.809 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3444 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4573 ; 1.310 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 5.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;39.159 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;19.004 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.489 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 492 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2464 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1799 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2396 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 223 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 140 ; 0.236 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2091 ; 1.339 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3238 ; 2.514 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1514 ; 5.310 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1335 ; 7.553 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1293 2.9892 -5.4511 REMARK 3 T TENSOR REMARK 3 T11: -0.1548 T22: 0.0518 REMARK 3 T33: -0.0014 T12: -0.0386 REMARK 3 T13: 0.0096 T23: -0.1725 REMARK 3 L TENSOR REMARK 3 L11: 3.5059 L22: 3.9846 REMARK 3 L33: 6.5188 L12: 0.5838 REMARK 3 L13: 0.2780 L23: 2.9315 REMARK 3 S TENSOR REMARK 3 S11: 0.2135 S12: -0.4098 S13: 0.0544 REMARK 3 S21: -0.3110 S22: 0.0998 S23: -0.1771 REMARK 3 S31: -0.1393 S32: 0.1437 S33: -0.3134 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5364 -6.3561 -28.4217 REMARK 3 T TENSOR REMARK 3 T11: -0.0878 T22: -0.0981 REMARK 3 T33: 0.0011 T12: 0.0114 REMARK 3 T13: -0.0252 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 3.2291 L22: 2.7363 REMARK 3 L33: 2.6061 L12: -0.2534 REMARK 3 L13: -1.2205 L23: -0.4552 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.0353 S13: 0.0599 REMARK 3 S21: -0.0749 S22: -0.0424 S23: -0.2809 REMARK 3 S31: 0.0849 S32: 0.1635 S33: -0.0385 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9364 -0.9656 -58.7280 REMARK 3 T TENSOR REMARK 3 T11: -0.1201 T22: 0.0011 REMARK 3 T33: 0.0242 T12: -0.0179 REMARK 3 T13: 0.0320 T23: -0.1573 REMARK 3 L TENSOR REMARK 3 L11: 3.9843 L22: 2.1104 REMARK 3 L33: 5.9636 L12: -0.4560 REMARK 3 L13: -1.9645 L23: 1.8766 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.4060 S13: -0.2922 REMARK 3 S21: 0.1695 S22: -0.0611 S23: 0.0447 REMARK 3 S31: 0.0636 S32: -0.1389 S33: 0.0727 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2019 10.8026 -37.1583 REMARK 3 T TENSOR REMARK 3 T11: -0.0086 T22: -0.0765 REMARK 3 T33: -0.0290 T12: 0.0088 REMARK 3 T13: -0.0031 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.9957 L22: 2.5181 REMARK 3 L33: 1.4476 L12: -1.7071 REMARK 3 L13: 0.4764 L23: -0.5636 REMARK 3 S TENSOR REMARK 3 S11: -0.2988 S12: -0.0242 S13: 0.0826 REMARK 3 S21: 0.3179 S22: 0.1500 S23: -0.1575 REMARK 3 S31: -0.2266 S32: 0.0352 S33: 0.1488 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 27 C 62 REMARK 3 ORIGIN FOR THE GROUP (A): -26.4588 -4.0591 -4.0317 REMARK 3 T TENSOR REMARK 3 T11: -0.1416 T22: 0.0162 REMARK 3 T33: -0.0107 T12: 0.0048 REMARK 3 T13: 0.0037 T23: -0.1155 REMARK 3 L TENSOR REMARK 3 L11: 3.6147 L22: 1.5117 REMARK 3 L33: 8.1310 L12: -0.2392 REMARK 3 L13: -1.8726 L23: 1.6853 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.4047 S13: 0.2100 REMARK 3 S21: -0.0421 S22: -0.1101 S23: 0.1244 REMARK 3 S31: -0.0749 S32: -0.0292 S33: 0.1228 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 68 C 128 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8111 -8.4736 -28.7854 REMARK 3 T TENSOR REMARK 3 T11: -0.0649 T22: -0.0600 REMARK 3 T33: -0.0095 T12: 0.0063 REMARK 3 T13: -0.0619 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.1274 L22: 2.8997 REMARK 3 L33: 3.7731 L12: -0.8822 REMARK 3 L13: -1.2659 L23: 1.1537 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.0259 S13: 0.1425 REMARK 3 S21: -0.2614 S22: -0.0610 S23: 0.2585 REMARK 3 S31: -0.1565 S32: -0.3239 S33: 0.0353 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 28 D 62 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4963 6.1556 -59.6171 REMARK 3 T TENSOR REMARK 3 T11: -0.1260 T22: 0.0582 REMARK 3 T33: -0.0279 T12: -0.0600 REMARK 3 T13: 0.0244 T23: -0.1285 REMARK 3 L TENSOR REMARK 3 L11: 3.5314 L22: 1.8199 REMARK 3 L33: 5.3868 L12: -0.2837 REMARK 3 L13: 1.6674 L23: 2.5479 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: 0.5253 S13: -0.4213 REMARK 3 S21: 0.0446 S22: -0.0966 S23: 0.0593 REMARK 3 S31: -0.0891 S32: -0.0502 S33: 0.1226 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 69 D 127 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2833 13.0028 -35.7446 REMARK 3 T TENSOR REMARK 3 T11: -0.0279 T22: -0.0670 REMARK 3 T33: -0.0649 T12: -0.0114 REMARK 3 T13: 0.0367 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.0047 L22: 2.6859 REMARK 3 L33: 1.7130 L12: 0.7319 REMARK 3 L13: 0.2501 L23: 1.0203 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: -0.0478 S13: -0.1032 REMARK 3 S21: 0.2451 S22: -0.0031 S23: 0.1245 REMARK 3 S31: 0.1164 S32: -0.1293 S33: 0.0900 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. CHAINS A AND C FORM THE BIOLOGICAL DIMER. REMARK 4 REMARK 4 2VKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VKJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PEG200, 0.1 M NACITRATE PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.98650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 ASP B 129 REMARK 465 GLY C 24 REMARK 465 SER C 25 REMARK 465 HIS C 26 REMARK 465 GLY D 24 REMARK 465 SER D 25 REMARK 465 HIS D 26 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 26 CG ND1 CD2 CE1 NE2 REMARK 480 HIS B 26 CB CG ND1 CD2 CE1 NE2 REMARK 480 GLU B 52 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE1 HIS A 26 CB VAL D 58 1556 1.59 REMARK 500 CE1 HIS A 26 CG1 VAL D 58 1556 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 26 CA HIS B 26 CB 0.403 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS B 26 N - CA - CB ANGL. DEV. = -37.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 -138.82 -119.32 REMARK 500 SER B 49 -161.26 -122.82 REMARK 500 ASN B 91 74.25 -106.13 REMARK 500 ALA B 127 28.55 -77.00 REMARK 500 SER C 49 -165.51 -117.43 REMARK 500 ASN C 91 76.83 -108.23 REMARK 500 SER D 49 -164.33 -113.85 REMARK 500 ASN D 91 73.78 -104.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G D1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C1130 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VKJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE SOLUBLE DOMAIN OF THE MEMBRANE PROTEIN TM1634 FROM REMARK 900 THERMOTOGA MARITIMA DBREF 2VKO A 24 27 PDB 2VKO 2VKO 24 27 DBREF 2VKO A 28 129 UNP Q9X1W9 Q9X1W9_THEMA 27 128 DBREF 2VKO B 24 27 PDB 2VKO 2VKO 24 27 DBREF 2VKO B 28 129 UNP Q9X1W9 Q9X1W9_THEMA 27 128 DBREF 2VKO C 24 27 PDB 2VKO 2VKO 24 27 DBREF 2VKO C 28 129 UNP Q9X1W9 Q9X1W9_THEMA 27 128 DBREF 2VKO D 24 27 PDB 2VKO 2VKO 24 27 DBREF 2VKO D 28 129 UNP Q9X1W9 Q9X1W9_THEMA 27 128 SEQRES 1 A 106 GLY SER HIS MET ASN LEU ALA VAL LYS LEU THR ARG MET SEQRES 2 A 106 GLU LYS THR LEU LYS ALA TYR GLU LEU TYR ILE PHE SER SEQRES 3 A 106 ASP TYR GLU ASN PHE GLU ASN TYR VAL LYS LYS GLU GLY SEQRES 4 A 106 LEU LYS ILE GLU GLY MET GLU LEU LEU LYS GLU LYS LYS SEQRES 5 A 106 ALA ARG SER LEU ILE ALA GLU GLY LYS ASP LEU PHE GLU SEQRES 6 A 106 THR ALA ASN TYR GLY GLU ALA LEU VAL PHE PHE GLU LYS SEQRES 7 A 106 ALA LEU ASN LEU SER ASP ASN GLU GLU ILE LYS LYS ILE SEQRES 8 A 106 ALA SER PHE TYR LEU GLU GLU CYS ARG LYS LYS LEU ALA SEQRES 9 A 106 GLY ASP SEQRES 1 B 106 GLY SER HIS MET ASN LEU ALA VAL LYS LEU THR ARG MET SEQRES 2 B 106 GLU LYS THR LEU LYS ALA TYR GLU LEU TYR ILE PHE SER SEQRES 3 B 106 ASP TYR GLU ASN PHE GLU ASN TYR VAL LYS LYS GLU GLY SEQRES 4 B 106 LEU LYS ILE GLU GLY MET GLU LEU LEU LYS GLU LYS LYS SEQRES 5 B 106 ALA ARG SER LEU ILE ALA GLU GLY LYS ASP LEU PHE GLU SEQRES 6 B 106 THR ALA ASN TYR GLY GLU ALA LEU VAL PHE PHE GLU LYS SEQRES 7 B 106 ALA LEU ASN LEU SER ASP ASN GLU GLU ILE LYS LYS ILE SEQRES 8 B 106 ALA SER PHE TYR LEU GLU GLU CYS ARG LYS LYS LEU ALA SEQRES 9 B 106 GLY ASP SEQRES 1 C 106 GLY SER HIS MET ASN LEU ALA VAL LYS LEU THR ARG MET SEQRES 2 C 106 GLU LYS THR LEU LYS ALA TYR GLU LEU TYR ILE PHE SER SEQRES 3 C 106 ASP TYR GLU ASN PHE GLU ASN TYR VAL LYS LYS GLU GLY SEQRES 4 C 106 LEU LYS ILE GLU GLY MET GLU LEU LEU LYS GLU LYS LYS SEQRES 5 C 106 ALA ARG SER LEU ILE ALA GLU GLY LYS ASP LEU PHE GLU SEQRES 6 C 106 THR ALA ASN TYR GLY GLU ALA LEU VAL PHE PHE GLU LYS SEQRES 7 C 106 ALA LEU ASN LEU SER ASP ASN GLU GLU ILE LYS LYS ILE SEQRES 8 C 106 ALA SER PHE TYR LEU GLU GLU CYS ARG LYS LYS LEU ALA SEQRES 9 C 106 GLY ASP SEQRES 1 D 106 GLY SER HIS MET ASN LEU ALA VAL LYS LEU THR ARG MET SEQRES 2 D 106 GLU LYS THR LEU LYS ALA TYR GLU LEU TYR ILE PHE SER SEQRES 3 D 106 ASP TYR GLU ASN PHE GLU ASN TYR VAL LYS LYS GLU GLY SEQRES 4 D 106 LEU LYS ILE GLU GLY MET GLU LEU LEU LYS GLU LYS LYS SEQRES 5 D 106 ALA ARG SER LEU ILE ALA GLU GLY LYS ASP LEU PHE GLU SEQRES 6 D 106 THR ALA ASN TYR GLY GLU ALA LEU VAL PHE PHE GLU LYS SEQRES 7 D 106 ALA LEU ASN LEU SER ASP ASN GLU GLU ILE LYS LYS ILE SEQRES 8 D 106 ALA SER PHE TYR LEU GLU GLU CYS ARG LYS LYS LEU ALA SEQRES 9 D 106 GLY ASP HET PG4 C1130 13 HET P6G D1130 19 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 5 PG4 C8 H18 O5 FORMUL 6 P6G C12 H26 O7 FORMUL 7 HOH *212(H2 O) HELIX 1 1 MET A 27 SER A 49 1 23 HELIX 2 2 ASP A 50 GLY A 62 1 13 HELIX 3 3 GLY A 67 GLU A 88 1 22 HELIX 4 4 ASN A 91 SER A 106 1 16 HELIX 5 5 ASN A 108 LEU A 126 1 19 HELIX 6 6 ASN B 28 SER B 49 1 22 HELIX 7 7 ASP B 50 GLY B 62 1 13 HELIX 8 8 GLY B 67 THR B 89 1 23 HELIX 9 9 ASN B 91 SER B 106 1 16 HELIX 10 10 ASN B 108 ALA B 127 1 20 HELIX 11 11 MET C 27 SER C 49 1 23 HELIX 12 12 ASP C 50 GLY C 62 1 13 HELIX 13 13 GLY C 67 THR C 89 1 23 HELIX 14 14 ASN C 91 SER C 106 1 16 HELIX 15 15 ASN C 108 ALA C 127 1 20 HELIX 16 16 MET D 27 SER D 49 1 23 HELIX 17 17 ASP D 50 GLY D 62 1 13 HELIX 18 18 GLY D 67 GLU D 69 5 3 HELIX 19 19 LEU D 70 THR D 89 1 20 HELIX 20 20 ASN D 91 SER D 106 1 16 HELIX 21 21 ASN D 108 ALA D 127 1 20 SITE 1 AC1 13 TYR D 46 ILE D 47 PHE D 48 SER D 49 SITE 2 AC1 13 LYS D 74 LYS D 75 SER D 78 LEU D 79 SITE 3 AC1 13 GLU D 82 VAL D 97 PHE D 98 LYS D 101 SITE 4 AC1 13 HOH D2008 SITE 1 AC2 11 TYR C 46 ILE C 47 SER C 49 LYS C 75 SITE 2 AC2 11 SER C 78 LEU C 79 GLU C 82 PHE C 98 SITE 3 AC2 11 LYS C 101 HOH C2006 HOH C2054 CRYST1 50.852 81.973 68.327 90.00 101.41 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019665 0.000000 0.003969 0.00000 SCALE2 0.000000 0.012199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014931 0.00000