HEADER IMMUNE SYSTEM 08-JAN-08 2VL5 TITLE STRUCTURE OF ANTI-COLLAGEN TYPE II FAB CIIC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIIC1 ANTICOLLAGEN FAB; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: CIIC1 ANTICOLLAGEN FAB; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: DBA/1; SOURCE 6 CELL_LINE: MONOCLONAL B-CELL HYBRIDOMA; SOURCE 7 ORGAN: SPLEEN; SOURCE 8 CELL: MONOCLONAL B-CELL HYBRIDOMA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 STRAIN: DBA/1; SOURCE 14 CELL_LINE: MONOCLONAL B-CELL HYBRIDOMA; SOURCE 15 ORGAN: SPLEEN; SOURCE 16 CELL: MONOCLONAL B-CELL HYBRIDOMA KEYWDS RHEUMATOID FACTOR, IMMUNE SYSTEM, ARTHRITIS, AUTOANTIBODIES, COLLAGEN KEYWDS 2 TYPE II EXPDTA X-RAY DIFFRACTION AUTHOR H.UYSAL,B.SEHNERT,K.S.NANDAKUMAR,U.BOIERS,H.BURKHARDT,R.HOLMDAHL, AUTHOR 2 M.M.THUNNISSEN REVDAT 5 16-OCT-24 2VL5 1 REMARK REVDAT 4 13-DEC-23 2VL5 1 REMARK REVDAT 3 08-MAY-19 2VL5 1 REMARK REVDAT 2 24-FEB-09 2VL5 1 VERSN REVDAT 1 18-MAR-08 2VL5 0 JRNL AUTH H.UYSAL,B.SEHNERT,K.S.NANDAKUMAR,U.BOIERS,H.BURKHARDT, JRNL AUTH 2 R.HOLMDAHL,M.M.THUNNISSEN JRNL TITL THE CRYSTAL STRUCTURE OF THE PATHOGENIC COLLAGEN TYPE JRNL TITL 2 II-SPECIFIC MOUSE MONOCLONAL ANTIBODY CIIC1 FAB: STRUCTURE JRNL TITL 3 TO FUNCTION ANALYSIS. JRNL REF MOL.IMMUNOL. V. 45 2196 2008 JRNL REFN ISSN 0161-5890 JRNL PMID 18241923 JRNL DOI 10.1016/J.MOLIMM.2007.12.005 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 50517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2659 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 1.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.259 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6814 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9297 ; 1.696 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 865 ; 7.214 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;38.716 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1085 ;16.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.791 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1048 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5135 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2656 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4395 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 432 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4459 ; 0.765 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7055 ; 1.237 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2769 ; 1.970 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2242 ; 2.873 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1290034954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97564 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 191077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1FSK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 SODIUM-FORMATE, 20 % PEG 3350, PH REMARK 280 7.2 HANGING DROP, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS B 218 REMARK 465 GLU D 217 REMARK 465 CYS D 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 192 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 188 NH1 ARG B 192 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 201 CB CYS C 201 SG -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 164 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 7 150.28 -43.10 REMARK 500 LYS A 67 -51.92 -126.58 REMARK 500 SER A 85 61.23 26.89 REMARK 500 SER A 178 -120.47 58.05 REMARK 500 ALA B 55 -38.15 64.50 REMARK 500 ARG B 72 -87.09 55.76 REMARK 500 LEU B 129 19.85 -60.91 REMARK 500 PRO B 145 -175.45 -65.89 REMARK 500 GLN B 160 -62.52 -95.87 REMARK 500 SER C 85 68.08 25.94 REMARK 500 CYS C 134 137.68 -36.60 REMARK 500 SER C 178 -113.54 64.96 REMARK 500 ALA D 55 -31.08 69.65 REMARK 500 ARG D 72 -91.94 58.38 REMARK 500 ALA D 88 179.86 173.04 REMARK 500 ALA D 134 101.61 -160.20 REMARK 500 ASP D 155 23.19 43.49 REMARK 500 GLN D 170 126.65 -39.16 REMARK 500 LYS D 203 -33.19 -39.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA C 9 ASP C 10 148.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. DBREF 2VL5 A 1 218 PDB 2VL5 2VL5 1 218 DBREF 2VL5 B 1 218 PDB 2VL5 2VL5 1 218 DBREF 2VL5 C 1 218 PDB 2VL5 2VL5 1 218 DBREF 2VL5 D 1 218 PDB 2VL5 2VL5 1 218 SEQRES 1 A 218 GLN VAL GLN LEU GLN GLN PRO GLY ALA ASP LEU VAL ARG SEQRES 2 A 218 PRO GLY VAL SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 A 218 TYR THR PHE THR SER TYR TRP MET ASN TRP VAL LYS GLN SEQRES 4 A 218 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY MET ILE HIS SEQRES 5 A 218 PRO SER ASP SER GLU THR ARG LEU SER GLN LYS PHE LYS SEQRES 6 A 218 ASP LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 A 218 ALA TYR MET GLN LEU SER SER PRO THR SER GLU ASP SER SEQRES 8 A 218 ALA VAL TYR TYR CYS ALA ARG LEU LYS PRO GLY GLY THR SEQRES 9 A 218 TRP PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 A 218 SER ALA ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 A 218 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 A 218 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 A 218 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 A 218 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 A 218 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 A 218 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 A 218 SER THR LYS VAL ASP LYS LYS ILE GLU PRO SEQRES 1 B 218 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU THR VAL SEQRES 2 B 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 B 218 LYS SER VAL ASP SER TYR GLY ASN SER PHE MET GLU TRP SEQRES 4 B 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 B 218 TYR ARG ALA SER ASN LEU GLU SER GLY ILE PRO ALA ARG SEQRES 6 B 218 PHE SER GLY SER GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 B 218 ILE ASN PRO VAL GLU ALA ASP ASP VAL ALA THR TYR TYR SEQRES 8 B 218 CYS GLN GLN SER ASN GLU ASP PRO TYR THR PHE GLY GLY SEQRES 9 B 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 B 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 B 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 B 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 B 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 B 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 B 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 B 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 B 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 C 218 GLN VAL GLN LEU GLN GLN PRO GLY ALA ASP LEU VAL ARG SEQRES 2 C 218 PRO GLY VAL SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 C 218 TYR THR PHE THR SER TYR TRP MET ASN TRP VAL LYS GLN SEQRES 4 C 218 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY MET ILE HIS SEQRES 5 C 218 PRO SER ASP SER GLU THR ARG LEU SER GLN LYS PHE LYS SEQRES 6 C 218 ASP LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 C 218 ALA TYR MET GLN LEU SER SER PRO THR SER GLU ASP SER SEQRES 8 C 218 ALA VAL TYR TYR CYS ALA ARG LEU LYS PRO GLY GLY THR SEQRES 9 C 218 TRP PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 C 218 SER ALA ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 C 218 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 C 218 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 C 218 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 C 218 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 C 218 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 C 218 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 C 218 SER THR LYS VAL ASP LYS LYS ILE GLU PRO SEQRES 1 D 218 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU THR VAL SEQRES 2 D 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 D 218 LYS SER VAL ASP SER TYR GLY ASN SER PHE MET GLU TRP SEQRES 4 D 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 D 218 TYR ARG ALA SER ASN LEU GLU SER GLY ILE PRO ALA ARG SEQRES 6 D 218 PHE SER GLY SER GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 D 218 ILE ASN PRO VAL GLU ALA ASP ASP VAL ALA THR TYR TYR SEQRES 8 D 218 CYS GLN GLN SER ASN GLU ASP PRO TYR THR PHE GLY GLY SEQRES 9 D 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 D 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 D 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 D 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 D 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 D 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 D 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 D 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 D 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS FORMUL 5 HOH *522(H2 O) HELIX 1 1 THR A 28 TYR A 32 5 5 HELIX 2 2 GLN A 62 LYS A 65 5 4 HELIX 3 3 THR A 87 SER A 91 5 5 HELIX 4 4 SER A 162 SER A 164 5 3 HELIX 5 5 SER A 192 TRP A 194 5 3 HELIX 6 6 PRO A 206 SER A 209 5 4 HELIX 7 7 GLU B 83 VAL B 87 5 5 HELIX 8 8 GLU B 127 SER B 131 5 5 HELIX 9 9 LYS B 187 ARG B 192 1 6 HELIX 10 10 THR C 28 TYR C 32 5 5 HELIX 11 11 GLN C 62 LYS C 65 5 4 HELIX 12 12 LYS C 74 SER C 76 5 3 HELIX 13 13 THR C 87 SER C 91 5 5 HELIX 14 14 SER C 162 SER C 164 5 3 HELIX 15 15 SER C 192 TRP C 194 5 3 HELIX 16 16 PRO C 206 SER C 209 5 4 HELIX 17 17 GLU D 83 VAL D 87 5 5 HELIX 18 18 SER D 125 GLY D 132 1 8 HELIX 19 19 LYS D 187 GLU D 191 1 5 SHEET 1 AA 4 GLN A 3 GLN A 5 0 SHEET 2 AA 4 VAL A 18 SER A 25 -1 O LYS A 23 N GLN A 5 SHEET 3 AA 4 THR A 78 LEU A 83 -1 O ALA A 79 N CYS A 22 SHEET 4 AA 4 ALA A 68 ASP A 73 -1 O THR A 69 N GLN A 82 SHEET 1 AB 6 ALA A 9 VAL A 12 0 SHEET 2 AB 6 THR A 113 VAL A 117 1 O LEU A 114 N ASP A 10 SHEET 3 AB 6 ALA A 92 ARG A 98 -1 O ALA A 92 N VAL A 115 SHEET 4 AB 6 MET A 34 GLN A 39 -1 O ASN A 35 N ALA A 97 SHEET 5 AB 6 LEU A 45 ILE A 51 -1 O GLU A 46 N LYS A 38 SHEET 6 AB 6 THR A 58 LEU A 60 -1 O ARG A 59 N MET A 50 SHEET 1 AC 4 ALA A 9 VAL A 12 0 SHEET 2 AC 4 THR A 113 VAL A 117 1 O LEU A 114 N ASP A 10 SHEET 3 AC 4 ALA A 92 ARG A 98 -1 O ALA A 92 N VAL A 115 SHEET 4 AC 4 TYR A 108 TRP A 109 -1 O TYR A 108 N ARG A 98 SHEET 1 AD 4 SER A 126 LEU A 130 0 SHEET 2 AD 4 SER A 141 TYR A 151 -1 O GLY A 145 N LEU A 130 SHEET 3 AD 4 LEU A 180 THR A 190 -1 O TYR A 181 N TYR A 151 SHEET 4 AD 4 VAL A 169 THR A 171 -1 O HIS A 170 N SER A 186 SHEET 1 AE 4 SER A 126 LEU A 130 0 SHEET 2 AE 4 SER A 141 TYR A 151 -1 O GLY A 145 N LEU A 130 SHEET 3 AE 4 LEU A 180 THR A 190 -1 O TYR A 181 N TYR A 151 SHEET 4 AE 4 VAL A 175 GLN A 177 -1 O VAL A 175 N THR A 182 SHEET 1 AF 3 THR A 157 TRP A 160 0 SHEET 2 AF 3 THR A 200 HIS A 205 -1 O ASN A 202 N THR A 159 SHEET 3 AF 3 THR A 210 LYS A 215 -1 O THR A 210 N HIS A 205 SHEET 1 BA 4 LEU B 4 SER B 7 0 SHEET 2 BA 4 ALA B 19 ALA B 25 -1 O SER B 22 N SER B 7 SHEET 3 BA 4 ASP B 74 ILE B 79 -1 O PHE B 75 N CYS B 23 SHEET 4 BA 4 PHE B 66 SER B 71 -1 O SER B 67 N THR B 78 SHEET 1 BB 6 SER B 10 SER B 14 0 SHEET 2 BB 6 THR B 106 LYS B 111 1 O LYS B 107 N LEU B 11 SHEET 3 BB 6 ALA B 88 GLN B 94 -1 O ALA B 88 N LEU B 108 SHEET 4 BB 6 MET B 37 GLN B 42 -1 O GLU B 38 N GLN B 93 SHEET 5 BB 6 LYS B 49 TYR B 53 -1 O LYS B 49 N GLN B 41 SHEET 6 BB 6 ASN B 57 LEU B 58 -1 O ASN B 57 N TYR B 53 SHEET 1 BC 2 ASP B 30 SER B 31 0 SHEET 2 BC 2 ASN B 34 SER B 35 -1 O ASN B 34 N SER B 31 SHEET 1 BD 4 THR B 118 PHE B 122 0 SHEET 2 BD 4 GLY B 133 PHE B 143 -1 O VAL B 137 N PHE B 122 SHEET 3 BD 4 TYR B 177 THR B 186 -1 O TYR B 177 N PHE B 143 SHEET 4 BD 4 VAL B 163 TRP B 167 -1 O LEU B 164 N THR B 182 SHEET 1 BE 4 SER B 157 GLU B 158 0 SHEET 2 BE 4 ILE B 148 ILE B 154 -1 O ILE B 154 N SER B 157 SHEET 3 BE 4 SER B 195 HIS B 202 -1 O THR B 197 N LYS B 153 SHEET 4 BE 4 ILE B 209 ASN B 214 -1 O ILE B 209 N ALA B 200 SHEET 1 CA 4 GLN C 3 GLN C 5 0 SHEET 2 CA 4 VAL C 18 SER C 25 -1 O LYS C 23 N GLN C 5 SHEET 3 CA 4 THR C 78 LEU C 83 -1 O ALA C 79 N CYS C 22 SHEET 4 CA 4 ALA C 68 ASP C 73 -1 O THR C 69 N GLN C 82 SHEET 1 CB 6 ALA C 9 VAL C 12 0 SHEET 2 CB 6 THR C 113 VAL C 117 1 O LEU C 114 N ASP C 10 SHEET 3 CB 6 ALA C 92 ARG C 98 -1 O ALA C 92 N VAL C 115 SHEET 4 CB 6 MET C 34 ARG C 40 -1 O ASN C 35 N ALA C 97 SHEET 5 CB 6 GLY C 44 ILE C 51 -1 O GLY C 44 N ARG C 40 SHEET 6 CB 6 THR C 58 LEU C 60 -1 O ARG C 59 N MET C 50 SHEET 1 CC 4 ALA C 9 VAL C 12 0 SHEET 2 CC 4 THR C 113 VAL C 117 1 O LEU C 114 N ASP C 10 SHEET 3 CC 4 ALA C 92 ARG C 98 -1 O ALA C 92 N VAL C 115 SHEET 4 CC 4 TYR C 108 TRP C 109 -1 O TYR C 108 N ARG C 98 SHEET 1 CD 7 SER C 126 LEU C 130 0 SHEET 2 CD 7 SER C 141 TYR C 151 -1 O GLY C 145 N LEU C 130 SHEET 3 CD 7 LEU C 180 THR C 190 -1 O TYR C 181 N TYR C 151 SHEET 4 CD 7 VAL C 169 THR C 171 -1 O HIS C 170 N SER C 186 SHEET 5 CD 7 LEU C 180 THR C 190 -1 O SER C 186 N HIS C 170 SHEET 6 CD 7 VAL C 175 GLN C 177 -1 O VAL C 175 N THR C 182 SHEET 7 CD 7 LEU C 180 THR C 190 -1 O LEU C 180 N GLN C 177 SHEET 1 CE 3 THR C 157 TRP C 160 0 SHEET 2 CE 3 THR C 200 HIS C 205 -1 O ASN C 202 N THR C 159 SHEET 3 CE 3 THR C 210 LYS C 215 -1 O THR C 210 N HIS C 205 SHEET 1 DA 4 LEU D 4 SER D 7 0 SHEET 2 DA 4 ALA D 19 ALA D 25 -1 O SER D 22 N SER D 7 SHEET 3 DA 4 ASP D 74 ILE D 79 -1 O PHE D 75 N CYS D 23 SHEET 4 DA 4 PHE D 66 SER D 71 -1 O SER D 67 N THR D 78 SHEET 1 DB 6 SER D 10 SER D 14 0 SHEET 2 DB 6 THR D 106 LYS D 111 1 O LYS D 107 N LEU D 11 SHEET 3 DB 6 ALA D 88 GLN D 94 -1 O ALA D 88 N LEU D 108 SHEET 4 DB 6 MET D 37 GLN D 42 -1 O GLU D 38 N GLN D 93 SHEET 5 DB 6 LYS D 49 TYR D 53 -1 O LYS D 49 N GLN D 41 SHEET 6 DB 6 ASN D 57 LEU D 58 -1 O ASN D 57 N TYR D 53 SHEET 1 DC 2 ASP D 30 SER D 31 0 SHEET 2 DC 2 ASN D 34 SER D 35 -1 O ASN D 34 N SER D 31 SHEET 1 DD 4 THR D 118 PHE D 122 0 SHEET 2 DD 4 GLY D 133 PHE D 143 -1 O VAL D 137 N PHE D 122 SHEET 3 DD 4 TYR D 177 THR D 186 -1 O TYR D 177 N PHE D 143 SHEET 4 DD 4 VAL D 163 TRP D 167 -1 O LEU D 164 N THR D 182 SHEET 1 DE 4 SER D 157 ARG D 159 0 SHEET 2 DE 4 ASN D 149 ILE D 154 -1 O TRP D 152 N ARG D 159 SHEET 3 DE 4 SER D 195 THR D 201 -1 O THR D 197 N LYS D 153 SHEET 4 DE 4 ILE D 209 ASN D 214 -1 O ILE D 209 N ALA D 200 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 2 CYS A 146 CYS A 201 1555 1555 2.06 SSBOND 3 CYS B 23 CYS B 92 1555 1555 2.04 SSBOND 4 CYS B 138 CYS B 198 1555 1555 2.04 SSBOND 5 CYS C 22 CYS C 96 1555 1555 2.02 SSBOND 6 CYS C 146 CYS C 201 1555 1555 2.06 SSBOND 7 CYS D 23 CYS D 92 1555 1555 2.04 SSBOND 8 CYS D 138 CYS D 198 1555 1555 2.02 CISPEP 1 PHE A 152 PRO A 153 0 -3.84 CISPEP 2 GLU A 154 PRO A 155 0 -7.63 CISPEP 3 TRP A 194 PRO A 195 0 8.55 CISPEP 4 SER B 7 PRO B 8 0 -9.87 CISPEP 5 ASN B 80 PRO B 81 0 -10.86 CISPEP 6 ASP B 98 PRO B 99 0 0.98 CISPEP 7 TYR B 144 PRO B 145 0 -7.38 CISPEP 8 PHE C 152 PRO C 153 0 -9.08 CISPEP 9 GLU C 154 PRO C 155 0 8.20 CISPEP 10 TRP C 194 PRO C 195 0 12.22 CISPEP 11 SER D 7 PRO D 8 0 4.90 CISPEP 12 ASN D 80 PRO D 81 0 -9.85 CISPEP 13 ASP D 98 PRO D 99 0 9.14 CISPEP 14 TYR D 144 PRO D 145 0 4.00 CRYST1 60.600 78.000 99.500 90.00 83.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016502 0.000000 -0.001997 0.00000 SCALE2 0.000000 0.012821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010124 0.00000