HEADER TOXIN 09-JAN-08 2VL8 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF LETHAL TOXIN TITLE 2 FROM CLOSTRIDIUM SORDELLII IN COMPLEX WITH UDP, TITLE 3 CASTANOSPERMINE AND CALCIUM ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOTOXIN L; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-546; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM SORDELLII; SOURCE 3 ORGANISM_TAXID: 1505; SOURCE 4 STRAIN: 6018; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN, GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.JANK,M.O.P.ZIEGLER,G.E.SCHULZ,K.AKTORIES REVDAT 4 13-JUL-11 2VL8 1 VERSN REVDAT 3 24-FEB-09 2VL8 1 VERSN REVDAT 2 01-JUL-08 2VL8 1 JRNL REMARK REVDAT 1 17-JUN-08 2VL8 0 JRNL AUTH T.JANK,M.O.P.ZIEGLER,G.E.SCHULZ,K.AKTORIES JRNL TITL INHIBITION OF THE GLUCOSYLTRANSFERASE ACTIVITY OF JRNL TITL 2 CLOSTRIDIAL RHO/RAS-GLUCOSYLATING TOXINS BY JRNL TITL 3 CASTANOSPERMINE. JRNL REF FEBS LETT. V. 582 2277 2008 JRNL REFN ISSN 0014-5793 JRNL PMID 18505687 JRNL DOI 10.1016/J.FEBSLET.2008.05.025 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 97392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6998 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.288 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.873 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 13562 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 18320 ; 1.372 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1603 ; 5.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 685 ;38.664 ;25.985 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2570 ;15.354 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.505 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2033 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10082 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 5796 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 9384 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 584 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 8328 ; 0.773 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 13069 ; 1.321 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6020 ; 1.868 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5251 ; 2.915 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4600 -0.2430 7.0650 REMARK 3 T TENSOR REMARK 3 T11: -0.0550 T22: -0.1072 REMARK 3 T33: -0.0600 T12: -0.0044 REMARK 3 T13: 0.0399 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.7203 L22: 1.1026 REMARK 3 L33: 8.1967 L12: -0.0724 REMARK 3 L13: -3.3360 L23: 0.7665 REMARK 3 S TENSOR REMARK 3 S11: -0.3161 S12: -0.1357 S13: -0.0921 REMARK 3 S21: -0.0256 S22: 0.0855 S23: 0.0205 REMARK 3 S31: 0.4493 S32: 0.1930 S33: 0.2307 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4860 32.4580 36.4330 REMARK 3 T TENSOR REMARK 3 T11: -0.0515 T22: -0.0317 REMARK 3 T33: -0.1181 T12: 0.0471 REMARK 3 T13: -0.0661 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.5202 L22: 1.7709 REMARK 3 L33: 0.9255 L12: 0.5407 REMARK 3 L13: -0.1312 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: -0.0683 S12: -0.1144 S13: 0.0776 REMARK 3 S21: -0.0483 S22: 0.0237 S23: 0.0883 REMARK 3 S31: -0.2049 S32: -0.1106 S33: 0.0447 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 294 A 361 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6010 5.8190 36.8630 REMARK 3 T TENSOR REMARK 3 T11: -0.1578 T22: 0.0276 REMARK 3 T33: -0.0430 T12: -0.0051 REMARK 3 T13: 0.0375 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 8.2816 L22: 2.9243 REMARK 3 L33: 4.6392 L12: 0.5196 REMARK 3 L13: 3.0825 L23: 0.4968 REMARK 3 S TENSOR REMARK 3 S11: 0.1549 S12: -0.1753 S13: -0.3095 REMARK 3 S21: 0.0212 S22: -0.1949 S23: 0.2335 REMARK 3 S31: 0.1852 S32: -0.5221 S33: 0.0399 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 362 A 542 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0190 23.7870 21.3270 REMARK 3 T TENSOR REMARK 3 T11: -0.0646 T22: -0.0417 REMARK 3 T33: -0.1098 T12: 0.0029 REMARK 3 T13: -0.0646 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.8605 L22: 1.4310 REMARK 3 L33: 1.2492 L12: 0.2905 REMARK 3 L13: -0.0078 L23: -0.1578 REMARK 3 S TENSOR REMARK 3 S11: -0.1096 S12: 0.0189 S13: -0.0078 REMARK 3 S21: -0.1222 S22: 0.0424 S23: 0.1461 REMARK 3 S31: -0.1196 S32: -0.0696 S33: 0.0671 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1170 -34.0460 93.9990 REMARK 3 T TENSOR REMARK 3 T11: -0.0511 T22: -0.1069 REMARK 3 T33: -0.0688 T12: -0.0295 REMARK 3 T13: 0.0134 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.6931 L22: 0.8255 REMARK 3 L33: 7.3354 L12: 0.0772 REMARK 3 L13: -2.7911 L23: -1.3192 REMARK 3 S TENSOR REMARK 3 S11: -0.1812 S12: 0.0136 S13: -0.0524 REMARK 3 S21: 0.0211 S22: 0.0203 S23: 0.0449 REMARK 3 S31: 0.5452 S32: -0.0846 S33: 0.1608 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 93 B 293 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6260 -2.0560 64.1800 REMARK 3 T TENSOR REMARK 3 T11: -0.0204 T22: 0.0427 REMARK 3 T33: -0.1095 T12: -0.0523 REMARK 3 T13: -0.0463 T23: 0.0888 REMARK 3 L TENSOR REMARK 3 L11: 0.7056 L22: 2.2351 REMARK 3 L33: 0.9139 L12: -0.0775 REMARK 3 L13: 0.0511 L23: -0.4055 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: 0.2046 S13: 0.0929 REMARK 3 S21: 0.0972 S22: -0.0744 S23: -0.0785 REMARK 3 S31: -0.2393 S32: 0.2119 S33: 0.1044 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 294 B 361 REMARK 3 ORIGIN FOR THE GROUP (A): 55.3630 -28.7010 64.1790 REMARK 3 T TENSOR REMARK 3 T11: -0.1706 T22: 0.1943 REMARK 3 T33: -0.0357 T12: 0.1114 REMARK 3 T13: 0.0158 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 6.4506 L22: 2.4911 REMARK 3 L33: 4.2770 L12: 0.2263 REMARK 3 L13: 2.1566 L23: -0.7029 REMARK 3 S TENSOR REMARK 3 S11: 0.1849 S12: 0.5938 S13: -0.1682 REMARK 3 S21: -0.0100 S22: -0.0706 S23: -0.4345 REMARK 3 S31: 0.2406 S32: 0.6225 S33: -0.1143 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 362 B 540 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6030 -10.6010 79.6630 REMARK 3 T TENSOR REMARK 3 T11: -0.0233 T22: -0.0044 REMARK 3 T33: -0.0886 T12: -0.0165 REMARK 3 T13: -0.0467 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 0.4467 L22: 1.6080 REMARK 3 L33: 1.3327 L12: -0.2052 REMARK 3 L13: -0.0192 L23: 0.2590 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: 0.0030 S13: 0.0233 REMARK 3 S21: 0.1300 S22: -0.0019 S23: -0.2204 REMARK 3 S31: -0.2408 S32: 0.1752 S33: 0.0558 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 92 REMARK 3 ORIGIN FOR THE GROUP (A): 45.7810 -64.2850 9.9700 REMARK 3 T TENSOR REMARK 3 T11: -0.0631 T22: -0.0276 REMARK 3 T33: -0.0147 T12: -0.0200 REMARK 3 T13: 0.0000 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 1.6494 L22: 1.2667 REMARK 3 L33: 5.3535 L12: -0.4087 REMARK 3 L13: -2.7896 L23: 0.9821 REMARK 3 S TENSOR REMARK 3 S11: -0.2303 S12: -0.0291 S13: -0.0711 REMARK 3 S21: -0.0959 S22: 0.0483 S23: -0.0740 REMARK 3 S31: 0.3230 S32: -0.0035 S33: 0.1819 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 93 C 293 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0380 -28.7930 35.7190 REMARK 3 T TENSOR REMARK 3 T11: -0.0111 T22: -0.0026 REMARK 3 T33: -0.0270 T12: -0.0078 REMARK 3 T13: -0.0333 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.2899 L22: 2.0687 REMARK 3 L33: 0.9538 L12: 0.1206 REMARK 3 L13: -0.1298 L23: 0.0413 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.0598 S13: 0.1003 REMARK 3 S21: -0.0042 S22: 0.0165 S23: -0.0051 REMARK 3 S31: -0.2398 S32: -0.0026 S33: -0.0075 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 294 C 361 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4890 -55.4340 38.7920 REMARK 3 T TENSOR REMARK 3 T11: -0.1432 T22: -0.0072 REMARK 3 T33: -0.0462 T12: -0.0513 REMARK 3 T13: -0.0045 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 8.2427 L22: 3.1394 REMARK 3 L33: 4.6554 L12: 0.5863 REMARK 3 L13: 2.0756 L23: 0.8461 REMARK 3 S TENSOR REMARK 3 S11: 0.2730 S12: -0.2676 S13: -0.1639 REMARK 3 S21: 0.0708 S22: -0.2786 S23: 0.3383 REMARK 3 S31: 0.2694 S32: -0.4659 S33: 0.0055 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 362 C 541 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1500 -39.1370 21.3810 REMARK 3 T TENSOR REMARK 3 T11: -0.0415 T22: 0.0407 REMARK 3 T33: -0.0414 T12: -0.0183 REMARK 3 T13: -0.0634 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.7081 L22: 1.5192 REMARK 3 L33: 1.2145 L12: 0.6419 REMARK 3 L13: -0.2622 L23: -0.1822 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.1030 S13: 0.1008 REMARK 3 S21: -0.1659 S22: 0.0379 S23: 0.2135 REMARK 3 S31: -0.1518 S32: -0.0309 S33: 0.0024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-08. REMARK 100 THE PDBE ID CODE IS EBI-34976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100405 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.31 REMARK 200 RESOLUTION RANGE LOW (A) : 95.78 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.0 REMARK 200 R MERGE (I) : 0.16 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.0 REMARK 200 R MERGE FOR SHELL (I) : 0.44 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.84450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.69200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 95.66600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.69200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.84450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 95.66600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 13 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ILE 289 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, VAL 13 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ILE 289 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN C, VAL 13 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ILE 289 TO MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 522 REMARK 465 ASN A 523 REMARK 465 GLN A 524 REMARK 465 LEU A 543 REMARK 465 GLY A 544 REMARK 465 GLU A 545 REMARK 465 ASP A 546 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 TRP B 520 REMARK 465 SER B 521 REMARK 465 PHE B 522 REMARK 465 ASN B 523 REMARK 465 GLN B 524 REMARK 465 GLY B 541 REMARK 465 ALA B 542 REMARK 465 LEU B 543 REMARK 465 GLY B 544 REMARK 465 GLU B 545 REMARK 465 ASP B 546 REMARK 465 SER C 521 REMARK 465 PHE C 522 REMARK 465 ASN C 523 REMARK 465 GLN C 524 REMARK 465 ALA C 542 REMARK 465 LEU C 543 REMARK 465 GLY C 544 REMARK 465 GLU C 545 REMARK 465 ASP C 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 17 -5.81 64.95 REMARK 500 ASP A 364 -141.05 52.43 REMARK 500 TRP A 520 78.58 -115.45 REMARK 500 PHE B 17 -10.43 65.04 REMARK 500 PRO B 164 -61.80 -100.95 REMARK 500 ASP B 364 -140.09 56.65 REMARK 500 PHE C 17 -12.39 75.26 REMARK 500 PRO C 164 -83.77 -102.54 REMARK 500 ASP C 364 -127.82 44.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1545 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 515 OE1 REMARK 620 2 ASP A 288 OD2 76.5 REMARK 620 3 SER A 518 OG 77.3 86.7 REMARK 620 4 HOH A2077 O 80.7 78.7 156.0 REMARK 620 5 UDP A1543 O2B 127.5 154.8 104.7 96.4 REMARK 620 6 UDP A1543 O2A 160.6 84.9 107.5 90.3 70.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1546 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 280 OD1 REMARK 620 2 HOH A2074 O 78.5 REMARK 620 3 GLU B 219 OE1 89.2 71.6 REMARK 620 4 GLU B 219 OE2 82.7 113.5 44.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1547 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 219 OE1 REMARK 620 2 GLU A 219 OE2 48.9 REMARK 620 3 ASP C 280 OD1 96.7 123.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1545 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 288 OD2 REMARK 620 2 UDP B1543 O2A 81.1 REMARK 620 3 HOH B2081 O 77.8 97.0 REMARK 620 4 UDP B1543 O2B 155.7 74.7 103.2 REMARK 620 5 GLU B 515 OE1 80.0 160.8 76.2 124.1 REMARK 620 6 SER B 518 OG 92.3 103.0 156.1 94.7 80.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1545 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 288 OD2 REMARK 620 2 GLU C 515 OE1 80.5 REMARK 620 3 SER C 518 OG 91.1 78.2 REMARK 620 4 UDP C1543 O3B 154.7 123.8 100.1 REMARK 620 5 HOH C2076 O 80.0 84.1 161.3 94.7 REMARK 620 6 UDP C1543 O2A 85.4 165.8 100.3 70.4 95.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A1543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTS A1544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1545 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B1543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTS B1544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1545 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP C1543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTS C1544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C1545 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1546 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1547 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VKH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF REMARK 900 LETHAL TOXIN FROM CLOSTRIDIUM SORDELLII IN REMARK 900 COMPLEX WITH UDP-GLC AND CALCIUM ION REMARK 900 RELATED ID: 2VKD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF REMARK 900 LETHAL TOXIN FROM CLOSTRIDIUM SORDELLII IN REMARK 900 COMPLEX WITH UDP-GLC AND MANGANESE ION DBREF 2VL8 A 1 546 UNP Q46342 Q46342_CLOSO 1 546 DBREF 2VL8 B 1 546 UNP Q46342 Q46342_CLOSO 1 546 DBREF 2VL8 C 1 546 UNP Q46342 Q46342_CLOSO 1 546 SEQADV 2VL8 ALA A 13 UNP Q46342 VAL 13 ENGINEERED MUTATION SEQADV 2VL8 MET A 289 UNP Q46342 ILE 289 ENGINEERED MUTATION SEQADV 2VL8 ALA B 13 UNP Q46342 VAL 13 ENGINEERED MUTATION SEQADV 2VL8 MET B 289 UNP Q46342 ILE 289 ENGINEERED MUTATION SEQADV 2VL8 ALA C 13 UNP Q46342 VAL 13 ENGINEERED MUTATION SEQADV 2VL8 MET C 289 UNP Q46342 ILE 289 ENGINEERED MUTATION SEQRES 1 A 546 MET ASN LEU VAL ASN LYS ALA GLN LEU GLN LYS MET ALA SEQRES 2 A 546 TYR VAL LYS PHE ARG ILE GLN GLU ASP GLU TYR VAL ALA SEQRES 3 A 546 ILE LEU ASN ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 A 546 SER SER VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 A 546 ASN ASN LEU THR ASP ASN TYR LEU ASN THR TYR LYS LYS SEQRES 6 A 546 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 A 546 LEU THR MET GLU VAL LEU GLU LEU LYS ASN ASN SER LEU SEQRES 8 A 546 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 A 546 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 A 546 TRP LYS ASP VAL ASN SER ASP TYR THR VAL LYS VAL PHE SEQRES 11 A 546 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 A 546 THR ILE VAL GLU SER ALA THR ASN ASN THR LEU GLU SER SEQRES 13 A 546 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASP TYR ASN SEQRES 14 A 546 LYS PHE TYR ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 A 546 GLN LYS HIS PHE ILE ASP TYR TYR LYS SER GLN ILE GLU SEQRES 16 A 546 GLU ASN PRO GLU PHE ILE ILE ASP ASN ILE ILE LYS THR SEQRES 17 A 546 TYR LEU SER ASN GLU TYR SER LYS ASP LEU GLU ALA LEU SEQRES 18 A 546 ASN LYS TYR ILE GLU GLU SER LEU ASN LYS ILE THR ALA SEQRES 19 A 546 ASN ASN GLY ASN ASP ILE ARG ASN LEU GLU LYS PHE ALA SEQRES 20 A 546 ASP GLU ASP LEU VAL ARG LEU TYR ASN GLN GLU LEU VAL SEQRES 21 A 546 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 A 546 ILE SER MET LEU LYS GLU ASP GLY GLY VAL TYR LEU ASP SEQRES 23 A 546 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE LYS SEQRES 24 A 546 SER ILE ASN LYS PRO ASP SER ILE THR ASN THR SER TRP SEQRES 25 A 546 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 A 546 TYR ILE PRO GLY TYR THR SER LYS ASN PHE ASP MET LEU SEQRES 27 A 546 ASP GLU GLU VAL GLN ARG SER PHE GLU SER ALA LEU SER SEQRES 28 A 546 SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU ASP SEQRES 29 A 546 ASP ILE LYS VAL SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 A 546 ALA ASN ASN SER VAL ILE ASN GLN ALA LEU ILE SER LEU SEQRES 31 A 546 LYS ASP SER TYR CYS SER ASP LEU VAL ILE ASN GLN ILE SEQRES 32 A 546 LYS ASN ARG TYR LYS ILE LEU ASN ASP ASN LEU ASN PRO SEQRES 33 A 546 SER ILE ASN GLU GLY THR ASP PHE ASN THR THR MET LYS SEQRES 34 A 546 ILE PHE SER ASP LYS LEU ALA SER ILE SER ASN GLU ASP SEQRES 35 A 546 ASN MET MET PHE MET ILE LYS ILE THR ASN TYR LEU LYS SEQRES 36 A 546 VAL GLY PHE ALA PRO ASP VAL ARG SER THR ILE ASN LEU SEQRES 37 A 546 SER GLY PRO GLY VAL TYR THR GLY ALA TYR GLN ASP LEU SEQRES 38 A 546 LEU MET PHE LYS ASP ASN SER THR ASN ILE HIS LEU LEU SEQRES 39 A 546 GLU PRO GLU LEU ARG ASN PHE GLU PHE PRO LYS THR LYS SEQRES 40 A 546 ILE SER GLN LEU THR GLU GLN GLU ILE THR SER LEU TRP SEQRES 41 A 546 SER PHE ASN GLN ALA ARG ALA LYS SER GLN PHE GLU GLU SEQRES 42 A 546 TYR LYS LYS GLY TYR PHE GLU GLY ALA LEU GLY GLU ASP SEQRES 1 B 546 MET ASN LEU VAL ASN LYS ALA GLN LEU GLN LYS MET ALA SEQRES 2 B 546 TYR VAL LYS PHE ARG ILE GLN GLU ASP GLU TYR VAL ALA SEQRES 3 B 546 ILE LEU ASN ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 B 546 SER SER VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 B 546 ASN ASN LEU THR ASP ASN TYR LEU ASN THR TYR LYS LYS SEQRES 6 B 546 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 B 546 LEU THR MET GLU VAL LEU GLU LEU LYS ASN ASN SER LEU SEQRES 8 B 546 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 B 546 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 B 546 TRP LYS ASP VAL ASN SER ASP TYR THR VAL LYS VAL PHE SEQRES 11 B 546 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 B 546 THR ILE VAL GLU SER ALA THR ASN ASN THR LEU GLU SER SEQRES 13 B 546 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASP TYR ASN SEQRES 14 B 546 LYS PHE TYR ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 B 546 GLN LYS HIS PHE ILE ASP TYR TYR LYS SER GLN ILE GLU SEQRES 16 B 546 GLU ASN PRO GLU PHE ILE ILE ASP ASN ILE ILE LYS THR SEQRES 17 B 546 TYR LEU SER ASN GLU TYR SER LYS ASP LEU GLU ALA LEU SEQRES 18 B 546 ASN LYS TYR ILE GLU GLU SER LEU ASN LYS ILE THR ALA SEQRES 19 B 546 ASN ASN GLY ASN ASP ILE ARG ASN LEU GLU LYS PHE ALA SEQRES 20 B 546 ASP GLU ASP LEU VAL ARG LEU TYR ASN GLN GLU LEU VAL SEQRES 21 B 546 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 B 546 ILE SER MET LEU LYS GLU ASP GLY GLY VAL TYR LEU ASP SEQRES 23 B 546 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE LYS SEQRES 24 B 546 SER ILE ASN LYS PRO ASP SER ILE THR ASN THR SER TRP SEQRES 25 B 546 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 B 546 TYR ILE PRO GLY TYR THR SER LYS ASN PHE ASP MET LEU SEQRES 27 B 546 ASP GLU GLU VAL GLN ARG SER PHE GLU SER ALA LEU SER SEQRES 28 B 546 SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU ASP SEQRES 29 B 546 ASP ILE LYS VAL SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 B 546 ALA ASN ASN SER VAL ILE ASN GLN ALA LEU ILE SER LEU SEQRES 31 B 546 LYS ASP SER TYR CYS SER ASP LEU VAL ILE ASN GLN ILE SEQRES 32 B 546 LYS ASN ARG TYR LYS ILE LEU ASN ASP ASN LEU ASN PRO SEQRES 33 B 546 SER ILE ASN GLU GLY THR ASP PHE ASN THR THR MET LYS SEQRES 34 B 546 ILE PHE SER ASP LYS LEU ALA SER ILE SER ASN GLU ASP SEQRES 35 B 546 ASN MET MET PHE MET ILE LYS ILE THR ASN TYR LEU LYS SEQRES 36 B 546 VAL GLY PHE ALA PRO ASP VAL ARG SER THR ILE ASN LEU SEQRES 37 B 546 SER GLY PRO GLY VAL TYR THR GLY ALA TYR GLN ASP LEU SEQRES 38 B 546 LEU MET PHE LYS ASP ASN SER THR ASN ILE HIS LEU LEU SEQRES 39 B 546 GLU PRO GLU LEU ARG ASN PHE GLU PHE PRO LYS THR LYS SEQRES 40 B 546 ILE SER GLN LEU THR GLU GLN GLU ILE THR SER LEU TRP SEQRES 41 B 546 SER PHE ASN GLN ALA ARG ALA LYS SER GLN PHE GLU GLU SEQRES 42 B 546 TYR LYS LYS GLY TYR PHE GLU GLY ALA LEU GLY GLU ASP SEQRES 1 C 546 MET ASN LEU VAL ASN LYS ALA GLN LEU GLN LYS MET ALA SEQRES 2 C 546 TYR VAL LYS PHE ARG ILE GLN GLU ASP GLU TYR VAL ALA SEQRES 3 C 546 ILE LEU ASN ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 C 546 SER SER VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 C 546 ASN ASN LEU THR ASP ASN TYR LEU ASN THR TYR LYS LYS SEQRES 6 C 546 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 C 546 LEU THR MET GLU VAL LEU GLU LEU LYS ASN ASN SER LEU SEQRES 8 C 546 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 C 546 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 C 546 TRP LYS ASP VAL ASN SER ASP TYR THR VAL LYS VAL PHE SEQRES 11 C 546 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 C 546 THR ILE VAL GLU SER ALA THR ASN ASN THR LEU GLU SER SEQRES 13 C 546 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASP TYR ASN SEQRES 14 C 546 LYS PHE TYR ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 C 546 GLN LYS HIS PHE ILE ASP TYR TYR LYS SER GLN ILE GLU SEQRES 16 C 546 GLU ASN PRO GLU PHE ILE ILE ASP ASN ILE ILE LYS THR SEQRES 17 C 546 TYR LEU SER ASN GLU TYR SER LYS ASP LEU GLU ALA LEU SEQRES 18 C 546 ASN LYS TYR ILE GLU GLU SER LEU ASN LYS ILE THR ALA SEQRES 19 C 546 ASN ASN GLY ASN ASP ILE ARG ASN LEU GLU LYS PHE ALA SEQRES 20 C 546 ASP GLU ASP LEU VAL ARG LEU TYR ASN GLN GLU LEU VAL SEQRES 21 C 546 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 C 546 ILE SER MET LEU LYS GLU ASP GLY GLY VAL TYR LEU ASP SEQRES 23 C 546 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE LYS SEQRES 24 C 546 SER ILE ASN LYS PRO ASP SER ILE THR ASN THR SER TRP SEQRES 25 C 546 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 C 546 TYR ILE PRO GLY TYR THR SER LYS ASN PHE ASP MET LEU SEQRES 27 C 546 ASP GLU GLU VAL GLN ARG SER PHE GLU SER ALA LEU SER SEQRES 28 C 546 SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU ASP SEQRES 29 C 546 ASP ILE LYS VAL SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 C 546 ALA ASN ASN SER VAL ILE ASN GLN ALA LEU ILE SER LEU SEQRES 31 C 546 LYS ASP SER TYR CYS SER ASP LEU VAL ILE ASN GLN ILE SEQRES 32 C 546 LYS ASN ARG TYR LYS ILE LEU ASN ASP ASN LEU ASN PRO SEQRES 33 C 546 SER ILE ASN GLU GLY THR ASP PHE ASN THR THR MET LYS SEQRES 34 C 546 ILE PHE SER ASP LYS LEU ALA SER ILE SER ASN GLU ASP SEQRES 35 C 546 ASN MET MET PHE MET ILE LYS ILE THR ASN TYR LEU LYS SEQRES 36 C 546 VAL GLY PHE ALA PRO ASP VAL ARG SER THR ILE ASN LEU SEQRES 37 C 546 SER GLY PRO GLY VAL TYR THR GLY ALA TYR GLN ASP LEU SEQRES 38 C 546 LEU MET PHE LYS ASP ASN SER THR ASN ILE HIS LEU LEU SEQRES 39 C 546 GLU PRO GLU LEU ARG ASN PHE GLU PHE PRO LYS THR LYS SEQRES 40 C 546 ILE SER GLN LEU THR GLU GLN GLU ILE THR SER LEU TRP SEQRES 41 C 546 SER PHE ASN GLN ALA ARG ALA LYS SER GLN PHE GLU GLU SEQRES 42 C 546 TYR LYS LYS GLY TYR PHE GLU GLY ALA LEU GLY GLU ASP HET UDP A1543 25 HET CTS A1544 13 HET CA A1545 1 HET UDP B1543 25 HET CTS B1544 13 HET CA B1545 1 HET UDP C1543 25 HET CTS C1544 13 HET CA C1545 1 HET CA A1546 1 HET CA A1547 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM CTS CASTANOSPERMINE HETNAM CA CALCIUM ION FORMUL 4 UDP 3(C9 H14 N2 O12 P2) FORMUL 5 CTS 3(C8 H15 N O4) FORMUL 6 CA 5(CA 2+) FORMUL 7 HOH *400(H2 O) HELIX 1 1 ASN A 5 ALA A 13 1 9 HELIX 2 2 GLU A 21 ASN A 36 1 16 HELIX 3 3 SER A 41 TYR A 63 1 23 HELIX 4 4 ARG A 68 ASN A 89 1 22 HELIX 5 5 ASN A 108 ASN A 122 1 15 HELIX 6 6 LEU A 137 SER A 156 1 20 HELIX 7 7 ASP A 167 ASN A 197 1 31 HELIX 8 8 ILE A 201 TYR A 214 1 14 HELIX 9 9 ASP A 217 ALA A 234 1 18 HELIX 10 10 ASP A 248 GLU A 261 1 14 HELIX 11 11 ASN A 264 GLY A 281 1 18 HELIX 12 12 THR A 308 GLU A 325 1 18 HELIX 13 13 ASN A 334 LEU A 338 5 5 HELIX 14 14 ASP A 339 LEU A 350 1 12 HELIX 15 15 ASP A 355 ILE A 359 5 5 HELIX 16 16 SER A 393 GLU A 420 1 28 HELIX 17 17 ASP A 423 SER A 439 1 17 HELIX 18 18 ASN A 443 THR A 451 1 9 HELIX 19 19 ASN A 452 VAL A 456 5 5 HELIX 20 20 GLY A 470 PHE A 484 1 15 HELIX 21 21 LEU A 494 ARG A 499 1 6 HELIX 22 22 PRO A 504 ILE A 508 5 5 HELIX 23 23 THR A 512 LEU A 519 1 8 HELIX 24 24 ALA A 527 GLY A 537 1 11 HELIX 25 25 ASN B 5 ALA B 13 1 9 HELIX 26 26 GLU B 21 ASN B 36 1 16 HELIX 27 27 SER B 41 TYR B 63 1 23 HELIX 28 28 ARG B 68 ASN B 89 1 22 HELIX 29 29 ASN B 108 ASN B 122 1 15 HELIX 30 30 LEU B 137 GLU B 155 1 19 HELIX 31 31 ASP B 167 ASN B 197 1 31 HELIX 32 32 ILE B 201 TYR B 214 1 14 HELIX 33 33 ASP B 217 ALA B 234 1 18 HELIX 34 34 ARG B 241 LEU B 243 5 3 HELIX 35 35 ASP B 248 GLU B 261 1 14 HELIX 36 36 ASN B 264 GLY B 281 1 18 HELIX 37 37 THR B 308 LYS B 324 1 17 HELIX 38 38 SER B 332 MET B 337 1 6 HELIX 39 39 ASP B 339 SER B 352 1 14 HELIX 40 40 ASP B 355 ILE B 359 5 5 HELIX 41 41 SER B 393 GLU B 420 1 28 HELIX 42 42 ASP B 423 ILE B 438 1 16 HELIX 43 43 ASN B 443 THR B 451 1 9 HELIX 44 44 ASN B 452 LYS B 455 5 4 HELIX 45 45 GLY B 470 PHE B 484 1 15 HELIX 46 46 LEU B 494 ARG B 499 1 6 HELIX 47 47 PRO B 504 ILE B 508 5 5 HELIX 48 48 THR B 512 SER B 518 1 7 HELIX 49 49 LYS B 528 GLY B 537 1 10 HELIX 50 50 ASN C 5 ALA C 13 1 9 HELIX 51 51 GLU C 21 ASN C 36 1 16 HELIX 52 52 SER C 41 TYR C 63 1 23 HELIX 53 53 ARG C 68 ASN C 89 1 22 HELIX 54 54 ASN C 108 ASN C 122 1 15 HELIX 55 55 LEU C 137 GLU C 155 1 19 HELIX 56 56 ASP C 167 ASN C 197 1 31 HELIX 57 57 ILE C 201 TYR C 214 1 14 HELIX 58 58 ASP C 217 ASN C 235 1 19 HELIX 59 59 ASP C 248 GLU C 261 1 14 HELIX 60 60 ASN C 264 GLY C 281 1 18 HELIX 61 61 THR C 308 GLU C 325 1 18 HELIX 62 62 ASN C 334 LEU C 338 5 5 HELIX 63 63 ASP C 339 SER C 352 1 14 HELIX 64 64 ASP C 355 ILE C 359 5 5 HELIX 65 65 SER C 393 GLU C 420 1 28 HELIX 66 66 ASP C 423 SER C 437 1 15 HELIX 67 67 ASN C 443 THR C 451 1 9 HELIX 68 68 ASN C 452 VAL C 456 5 5 HELIX 69 69 ARG C 463 SER C 469 1 7 HELIX 70 70 GLY C 470 PHE C 484 1 15 HELIX 71 71 LEU C 494 ARG C 499 1 6 HELIX 72 72 PRO C 504 ILE C 508 5 5 HELIX 73 73 THR C 512 LEU C 519 1 8 HELIX 74 74 LYS C 528 LYS C 536 1 9 HELIX 75 75 GLY C 537 PHE C 539 5 3 SHEET 1 AA 2 THR A 92 PRO A 93 0 SHEET 2 AA 2 LYS A 367 VAL A 368 -1 O VAL A 368 N THR A 92 SHEET 1 AB 6 GLY A 237 ASP A 239 0 SHEET 2 AB 6 THR A 126 TYR A 131 1 O VAL A 129 N ASN A 238 SHEET 3 AB 6 ASN A 97 ILE A 101 1 O LEU A 98 N LYS A 128 SHEET 4 AB 6 GLY A 282 LEU A 285 1 O VAL A 283 N HIS A 99 SHEET 5 AB 6 SER A 381 SER A 389 -1 O LEU A 387 N TYR A 284 SHEET 6 AB 6 LYS A 374 ALA A 378 -1 O LYS A 374 N ILE A 388 SHEET 1 BA 2 THR B 92 PRO B 93 0 SHEET 2 BA 2 LYS B 367 VAL B 368 -1 O VAL B 368 N THR B 92 SHEET 1 BB 6 GLY B 237 ASP B 239 0 SHEET 2 BB 6 THR B 126 TYR B 131 1 O VAL B 129 N ASN B 238 SHEET 3 BB 6 ASN B 97 ILE B 101 1 O LEU B 98 N LYS B 128 SHEET 4 BB 6 GLY B 282 LEU B 285 1 O VAL B 283 N HIS B 99 SHEET 5 BB 6 SER B 381 SER B 389 -1 O LEU B 387 N TYR B 284 SHEET 6 BB 6 LYS B 374 ALA B 378 -1 O LYS B 374 N ILE B 388 SHEET 1 CA 2 THR C 92 PRO C 93 0 SHEET 2 CA 2 LYS C 367 VAL C 368 -1 O VAL C 368 N THR C 92 SHEET 1 CB 6 ASN C 238 ASP C 239 0 SHEET 2 CB 6 THR C 126 TYR C 131 1 O VAL C 129 N ASN C 238 SHEET 3 CB 6 ASN C 97 ILE C 101 1 O LEU C 98 N LYS C 128 SHEET 4 CB 6 GLY C 282 LEU C 285 1 O VAL C 283 N HIS C 99 SHEET 5 CB 6 SER C 381 SER C 389 -1 O LEU C 387 N TYR C 284 SHEET 6 CB 6 LYS C 374 ALA C 378 -1 O LYS C 374 N ILE C 388 LINK CA CA A1545 OE1 GLU A 515 1555 1555 2.24 LINK CA CA A1545 OD2 ASP A 288 1555 1555 2.32 LINK CA CA A1545 OG SER A 518 1555 1555 2.82 LINK CA CA A1545 O HOH A2077 1555 1555 2.45 LINK CA CA A1545 O2B UDP A1543 1555 1555 2.47 LINK CA CA A1545 O2A UDP A1543 1555 1555 2.49 LINK CA CA A1546 OD1 ASP A 280 1555 1555 2.36 LINK CA CA A1546 O HOH A2074 1555 1555 2.42 LINK CA CA A1546 OE1 GLU B 219 1555 1555 2.97 LINK CA CA A1546 OE2 GLU B 219 1555 1555 2.79 LINK CA CA A1547 OE1 GLU A 219 1555 1555 2.80 LINK CA CA A1547 OE2 GLU A 219 1555 1555 2.51 LINK CA CA A1547 OD1 ASP C 280 1555 3655 2.28 LINK CA CA B1545 O2A UDP B1543 1555 1555 2.46 LINK CA CA B1545 O HOH B2081 1555 1555 2.40 LINK CA CA B1545 O2B UDP B1543 1555 1555 2.40 LINK CA CA B1545 OE1 GLU B 515 1555 1555 2.25 LINK CA CA B1545 OG SER B 518 1555 1555 2.62 LINK CA CA B1545 OD2 ASP B 288 1555 1555 2.47 LINK CA CA C1545 OE1 GLU C 515 1555 1555 2.20 LINK CA CA C1545 OG SER C 518 1555 1555 2.66 LINK CA CA C1545 O3B UDP C1543 1555 1555 2.33 LINK CA CA C1545 O HOH C2076 1555 1555 2.43 LINK CA CA C1545 O2A UDP C1543 1555 1555 2.61 LINK CA CA C1545 OD2 ASP C 288 1555 1555 2.22 CISPEP 1 ASP A 163 PRO A 164 0 -12.95 CISPEP 2 ASP B 163 PRO B 164 0 -22.27 CISPEP 3 ASP C 163 PRO C 164 0 -8.03 SITE 1 AC1 15 ILE A 101 TRP A 102 ILE A 103 ASN A 139 SITE 2 AC1 15 LEU A 265 SER A 269 TYR A 284 ASP A 286 SITE 3 AC1 15 VAL A 287 ASP A 288 SER A 518 CTS A1544 SITE 4 AC1 15 CA A1545 HOH A2138 HOH A2139 SITE 1 AC2 8 ALA A 266 ASP A 270 ARG A 273 ASP A 286 SITE 2 AC2 8 ILE A 383 ASN A 384 THR A 465 UDP A1543 SITE 1 AC3 5 ASP A 288 GLU A 515 SER A 518 UDP A1543 SITE 2 AC3 5 HOH A2077 SITE 1 AC4 14 ILE B 101 TRP B 102 ILE B 103 ASN B 139 SITE 2 AC4 14 LEU B 265 SER B 269 TYR B 284 ASP B 286 SITE 3 AC4 14 VAL B 287 ASP B 288 SER B 518 CTS B1544 SITE 4 AC4 14 CA B1545 HOH B2129 SITE 1 AC5 9 ALA B 266 ASP B 270 ARG B 273 ASP B 286 SITE 2 AC5 9 ILE B 383 ASN B 384 THR B 465 GLY B 470 SITE 3 AC5 9 UDP B1543 SITE 1 AC6 5 ASP B 288 GLU B 515 SER B 518 UDP B1543 SITE 2 AC6 5 HOH B2081 SITE 1 AC7 14 ILE C 101 TRP C 102 ILE C 103 ASN C 139 SITE 2 AC7 14 LEU C 265 SER C 269 TYR C 284 ASP C 286 SITE 3 AC7 14 VAL C 287 ASP C 288 SER C 518 CTS C1544 SITE 4 AC7 14 CA C1545 HOH C2132 SITE 1 AC8 10 ALA C 266 ASP C 270 ARG C 273 ASP C 286 SITE 2 AC8 10 ILE C 383 ASN C 384 GLN C 385 THR C 465 SITE 3 AC8 10 GLY C 470 UDP C1543 SITE 1 AC9 5 ASP C 288 GLU C 515 SER C 518 UDP C1543 SITE 2 AC9 5 HOH C2076 SITE 1 BC1 3 ASP A 280 HOH A2074 GLU B 219 SITE 1 BC2 2 GLU A 219 ASP C 280 CRYST1 57.689 191.332 205.384 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004869 0.00000