data_2VLA # _entry.id 2VLA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VLA PDBE EBI-34983 WWPDB D_1290034983 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VLA _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-01-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sukackaite, R.' 1 'Grazulis, S.' 2 'Bochtler, M.' 3 'Siksnys, V.' 4 # _citation.id primary _citation.title 'The Recognition Domain of the Bpuji Restriction Endonuclease in Complex with Cognate DNA at 1.3-A Resolution.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 378 _citation.page_first 1084 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18433771 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2008.03.041 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sukackaite, R.' 1 ? primary 'Grazulis, S.' 2 ? primary 'Bochtler, M.' 3 ? primary 'Siksnys, V.' 4 ? # _cell.entry_id 2VLA _cell.length_a 56.292 _cell.length_b 167.513 _cell.length_c 43.846 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VLA _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RESTRICTION ENDONUCLEASE R.BPUJI' 33483.945 1 3.1.21.4 ? 'RECOGNITION DOMAIN, RESIDUES 1-285' ? 2 polymer syn ;5'-D(*GP*GP*TP*AP*CP*CP*CP*GP*TP*GP *GP*A)-3' ; 3703.416 1 ? ? ? ? 3 polymer syn ;5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*TP*AP *CP*C)-3' ; 3623.368 1 ? ? ? ? 4 non-polymer syn '1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE' 266.331 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 water nat water 18.015 461 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name BPUJI # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MNYNPEEQFRCTIIRGKAKNMLDNLLPAYANIIDDICPCDKASFVKDFNNRLIEILGEETTKKTLDNHRTEIAGKLFGMF YEDDEVIFPSGRTNKYIEDSDQPAFFKDICFKFQFPNGMDKLDKVIEKVGAKIQIRQFPYILQVLLTADNNNIQLSKDDI AYYVLNSLQVLQGKIKPIEVIEKIIEDRSNDITKKVRHPGKETSYSMQHIREQLNYLELANLIRIDGNLVKLNYREAENI NYIAQFWGNKPEFNAYKYDFTSEDDKKSFFKDWQQYYSNVNSHKS ; ;MNYNPEEQFRCTIIRGKAKNMLDNLLPAYANIIDDICPCDKASFVKDFNNRLIEILGEETTKKTLDNHRTEIAGKLFGMF YEDDEVIFPSGRTNKYIEDSDQPAFFKDICFKFQFPNGMDKLDKVIEKVGAKIQIRQFPYILQVLLTADNNNIQLSKDDI AYYVLNSLQVLQGKIKPIEVIEKIIEDRSNDITKKVRHPGKETSYSMQHIREQLNYLELANLIRIDGNLVKLNYREAENI NYIAQFWGNKPEFNAYKYDFTSEDDKKSFFKDWQQYYSNVNSHKS ; A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DA)(DC)(DC)(DC)(DG)(DT)(DG)(DG)(DA)' GGTACCCGTGGA L ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DC)(DA)(DC)(DG)(DG)(DG)(DT)(DA)(DC)(DC)' TCCACGGGTACC M ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 TYR n 1 4 ASN n 1 5 PRO n 1 6 GLU n 1 7 GLU n 1 8 GLN n 1 9 PHE n 1 10 ARG n 1 11 CYS n 1 12 THR n 1 13 ILE n 1 14 ILE n 1 15 ARG n 1 16 GLY n 1 17 LYS n 1 18 ALA n 1 19 LYS n 1 20 ASN n 1 21 MET n 1 22 LEU n 1 23 ASP n 1 24 ASN n 1 25 LEU n 1 26 LEU n 1 27 PRO n 1 28 ALA n 1 29 TYR n 1 30 ALA n 1 31 ASN n 1 32 ILE n 1 33 ILE n 1 34 ASP n 1 35 ASP n 1 36 ILE n 1 37 CYS n 1 38 PRO n 1 39 CYS n 1 40 ASP n 1 41 LYS n 1 42 ALA n 1 43 SER n 1 44 PHE n 1 45 VAL n 1 46 LYS n 1 47 ASP n 1 48 PHE n 1 49 ASN n 1 50 ASN n 1 51 ARG n 1 52 LEU n 1 53 ILE n 1 54 GLU n 1 55 ILE n 1 56 LEU n 1 57 GLY n 1 58 GLU n 1 59 GLU n 1 60 THR n 1 61 THR n 1 62 LYS n 1 63 LYS n 1 64 THR n 1 65 LEU n 1 66 ASP n 1 67 ASN n 1 68 HIS n 1 69 ARG n 1 70 THR n 1 71 GLU n 1 72 ILE n 1 73 ALA n 1 74 GLY n 1 75 LYS n 1 76 LEU n 1 77 PHE n 1 78 GLY n 1 79 MET n 1 80 PHE n 1 81 TYR n 1 82 GLU n 1 83 ASP n 1 84 ASP n 1 85 GLU n 1 86 VAL n 1 87 ILE n 1 88 PHE n 1 89 PRO n 1 90 SER n 1 91 GLY n 1 92 ARG n 1 93 THR n 1 94 ASN n 1 95 LYS n 1 96 TYR n 1 97 ILE n 1 98 GLU n 1 99 ASP n 1 100 SER n 1 101 ASP n 1 102 GLN n 1 103 PRO n 1 104 ALA n 1 105 PHE n 1 106 PHE n 1 107 LYS n 1 108 ASP n 1 109 ILE n 1 110 CYS n 1 111 PHE n 1 112 LYS n 1 113 PHE n 1 114 GLN n 1 115 PHE n 1 116 PRO n 1 117 ASN n 1 118 GLY n 1 119 MET n 1 120 ASP n 1 121 LYS n 1 122 LEU n 1 123 ASP n 1 124 LYS n 1 125 VAL n 1 126 ILE n 1 127 GLU n 1 128 LYS n 1 129 VAL n 1 130 GLY n 1 131 ALA n 1 132 LYS n 1 133 ILE n 1 134 GLN n 1 135 ILE n 1 136 ARG n 1 137 GLN n 1 138 PHE n 1 139 PRO n 1 140 TYR n 1 141 ILE n 1 142 LEU n 1 143 GLN n 1 144 VAL n 1 145 LEU n 1 146 LEU n 1 147 THR n 1 148 ALA n 1 149 ASP n 1 150 ASN n 1 151 ASN n 1 152 ASN n 1 153 ILE n 1 154 GLN n 1 155 LEU n 1 156 SER n 1 157 LYS n 1 158 ASP n 1 159 ASP n 1 160 ILE n 1 161 ALA n 1 162 TYR n 1 163 TYR n 1 164 VAL n 1 165 LEU n 1 166 ASN n 1 167 SER n 1 168 LEU n 1 169 GLN n 1 170 VAL n 1 171 LEU n 1 172 GLN n 1 173 GLY n 1 174 LYS n 1 175 ILE n 1 176 LYS n 1 177 PRO n 1 178 ILE n 1 179 GLU n 1 180 VAL n 1 181 ILE n 1 182 GLU n 1 183 LYS n 1 184 ILE n 1 185 ILE n 1 186 GLU n 1 187 ASP n 1 188 ARG n 1 189 SER n 1 190 ASN n 1 191 ASP n 1 192 ILE n 1 193 THR n 1 194 LYS n 1 195 LYS n 1 196 VAL n 1 197 ARG n 1 198 HIS n 1 199 PRO n 1 200 GLY n 1 201 LYS n 1 202 GLU n 1 203 THR n 1 204 SER n 1 205 TYR n 1 206 SER n 1 207 MET n 1 208 GLN n 1 209 HIS n 1 210 ILE n 1 211 ARG n 1 212 GLU n 1 213 GLN n 1 214 LEU n 1 215 ASN n 1 216 TYR n 1 217 LEU n 1 218 GLU n 1 219 LEU n 1 220 ALA n 1 221 ASN n 1 222 LEU n 1 223 ILE n 1 224 ARG n 1 225 ILE n 1 226 ASP n 1 227 GLY n 1 228 ASN n 1 229 LEU n 1 230 VAL n 1 231 LYS n 1 232 LEU n 1 233 ASN n 1 234 TYR n 1 235 ARG n 1 236 GLU n 1 237 ALA n 1 238 GLU n 1 239 ASN n 1 240 ILE n 1 241 ASN n 1 242 TYR n 1 243 ILE n 1 244 ALA n 1 245 GLN n 1 246 PHE n 1 247 TRP n 1 248 GLY n 1 249 ASN n 1 250 LYS n 1 251 PRO n 1 252 GLU n 1 253 PHE n 1 254 ASN n 1 255 ALA n 1 256 TYR n 1 257 LYS n 1 258 TYR n 1 259 ASP n 1 260 PHE n 1 261 THR n 1 262 SER n 1 263 GLU n 1 264 ASP n 1 265 ASP n 1 266 LYS n 1 267 LYS n 1 268 SER n 1 269 PHE n 1 270 PHE n 1 271 LYS n 1 272 ASP n 1 273 TRP n 1 274 GLN n 1 275 GLN n 1 276 TYR n 1 277 TYR n 1 278 SER n 1 279 ASN n 1 280 VAL n 1 281 ASN n 1 282 SER n 1 283 HIS n 1 284 LYS n 1 285 SER n 2 1 DG n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DC n 2 6 DC n 2 7 DC n 2 8 DG n 2 9 DT n 2 10 DG n 2 11 DG n 2 12 DA n 3 1 DT n 3 2 DC n 3 3 DC n 3 4 DA n 3 5 DC n 3 6 DG n 3 7 DG n 3 8 DG n 3 9 DT n 3 10 DA n 3 11 DC n 3 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain RFL1458 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BACILLUS PUMILUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1408 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ER2267 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PAL-BPUJI _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP A3FMN7_BACPU 1 ? ? A3FMN7 ? 2 PDB 2VLA 2 ? ? 2VLA ? 3 PDB 2VLA 3 ? ? 2VLA ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VLA A 1 ? 285 ? A3FMN7 1 ? 285 ? 1 285 2 2 2VLA L 1 ? 12 ? 2VLA 101 ? 112 ? 101 112 3 3 2VLA M 1 ? 12 ? 2VLA 201 ? 212 ? 201 212 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PG6 non-polymer . '1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE' ? 'C12 H26 O6' 266.331 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VLA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 55 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M AMMONIUM TARTRATE, 20% PEG3350, pH 6.6' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-11-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X12 _diffrn_source.pdbx_wavelength 1.0000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VLA _reflns.observed_criterion_sigma_I 2.3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 55.99 _reflns.d_resolution_high 1.30 _reflns.number_obs 101561 _reflns.number_all ? _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.70 _reflns.B_iso_Wilson_estimate 13.40 _reflns.pdbx_redundancy 10.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.37 _reflns_shell.percent_possible_all 98.2 _reflns_shell.Rmerge_I_obs 0.31 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.30 _reflns_shell.pdbx_redundancy 8.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VLA _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 91374 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 83.62 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 97.5 _refine.ls_R_factor_obs 0.140 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.138 _refine.ls_R_factor_R_free 0.166 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 10116 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.977 _refine.correlation_coeff_Fo_to_Fc_free 0.970 _refine.B_iso_mean 13.91 _refine.aniso_B[1][1] 3.48000 _refine.aniso_B[2][2] -1.99000 _refine.aniso_B[3][3] -1.48000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.044 _refine.pdbx_overall_ESU_R_Free 0.043 _refine.overall_SU_ML 0.032 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.727 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2289 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 461 _refine_hist.number_atoms_total 3255 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 83.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 3074 'X-RAY DIFFRACTION' ? r_bond_other_d 0.000 0.020 ? 1981 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.099 2.164 ? 4268 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.780 3.000 ? 4867 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.505 5.000 ? 315 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.140 25.448 ? 134 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.589 15.000 ? 468 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.495 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 452 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 3141 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 513 'X-RAY DIFFRACTION' ? r_nbd_refined 0.229 0.200 ? 640 'X-RAY DIFFRACTION' ? r_nbd_other 0.225 0.200 ? 2227 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.201 0.200 ? 1493 'X-RAY DIFFRACTION' ? r_nbtor_other 0.090 0.200 ? 1406 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.165 0.200 ? 289 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.258 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.245 0.200 ? 55 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.145 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.119 1.500 ? 1503 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.951 2.000 ? 2462 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 5.414 3.000 ? 1702 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.777 4.500 ? 1806 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.29 _refine_ls_shell.d_res_low 1.33 _refine_ls_shell.number_reflns_R_work 6144 _refine_ls_shell.R_factor_R_work 0.2070 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2420 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 697 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VLA _struct.title 'Crystal structure of restriction endonuclease BpuJI recognition domain in complex with cognate DNA' _struct.pdbx_descriptor 'RESTRICTION ENDONUCLEASE R.BPUJI (E.C.3.1.21.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VLA _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'RESTRICTION ENDONUCLEASE, HYDROLASE, ENDONUCLEASE, DNA RECOGNITION, HELIX-TURN-HELIX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 21 ? ILE A 36 ? MET A 21 ILE A 36 1 ? 16 HELX_P HELX_P2 2 LYS A 41 ? LEU A 56 ? LYS A 41 LEU A 56 1 ? 16 HELX_P HELX_P3 3 LYS A 62 ? ILE A 72 ? LYS A 62 ILE A 72 1 ? 11 HELX_P HELX_P4 4 GLY A 91 ? ASP A 99 ? GLY A 91 ASP A 99 1 ? 9 HELX_P HELX_P5 5 GLN A 102 ? LYS A 112 ? GLN A 102 LYS A 112 1 ? 11 HELX_P HELX_P6 6 LEU A 122 ? ALA A 131 ? LEU A 122 ALA A 131 1 ? 10 HELX_P HELX_P7 7 GLN A 137 ? ASN A 151 ? GLN A 137 ASN A 151 1 ? 15 HELX_P HELX_P8 8 ASP A 158 ? VAL A 164 ? ASP A 158 VAL A 164 1 ? 7 HELX_P HELX_P9 9 LEU A 168 ? GLN A 172 ? LEU A 168 GLN A 172 1 ? 5 HELX_P HELX_P10 10 PRO A 177 ? ASN A 190 ? PRO A 177 ASN A 190 1 ? 14 HELX_P HELX_P11 11 THR A 203 ? ALA A 220 ? THR A 203 ALA A 220 1 ? 18 HELX_P HELX_P12 12 ALA A 237 ? GLN A 245 ? ALA A 237 GLN A 245 1 ? 9 HELX_P HELX_P13 13 GLU A 263 ? SER A 278 ? GLU A 263 SER A 278 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? E NA . NA ? ? ? 1_555 A GLY 173 O ? ? A NA 1282 A GLY 173 1_555 ? ? ? ? ? ? ? 2.573 ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 12 N3 ? ? L DG 101 M DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 12 O2 ? ? L DG 101 M DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 12 N4 ? ? L DG 101 M DC 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 11 N3 ? ? L DG 102 M DC 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 11 O2 ? ? L DG 102 M DC 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 11 N4 ? ? L DG 102 M DC 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 10 N1 ? ? L DT 103 M DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 10 N6 ? ? L DT 103 M DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 9 N3 ? ? L DA 104 M DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 9 O4 ? ? L DA 104 M DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? L DC 105 M DG 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? L DC 105 M DG 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? L DC 105 M DG 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 7 N1 ? ? L DC 106 M DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 7 O6 ? ? L DC 106 M DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 7 N2 ? ? L DC 106 M DG 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 6 N1 ? ? L DC 107 M DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 6 O6 ? ? L DC 107 M DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 6 N2 ? ? L DC 107 M DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? L DG 108 M DC 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? L DG 108 M DC 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? L DG 108 M DC 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? L DT 109 M DA 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? L DT 109 M DA 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 3 N3 ? ? L DG 110 M DC 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 3 O2 ? ? L DG 110 M DC 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 3 N4 ? ? L DG 110 M DC 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? L DG 111 M DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? L DG 111 M DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? L DG 111 M DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 1 N3 ? ? L DA 112 M DT 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 1 O4 ? ? L DA 112 M DT 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 CYS 37 A . ? CYS 37 A PRO 38 A ? PRO 38 A 1 -5.33 2 PHE 115 A . ? PHE 115 A PRO 116 A ? PRO 116 A 1 -6.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 CYS A 39 ? ASP A 40 ? CYS A 39 ASP A 40 AA 2 VAL A 86 ? PRO A 89 ? VAL A 86 PRO A 89 AA 3 PHE A 80 ? ASP A 83 ? PHE A 80 ASP A 83 AB 1 ILE A 223 ? ILE A 225 ? ILE A 223 ILE A 225 AB 2 VAL A 230 ? LEU A 232 ? VAL A 230 LEU A 232 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N CYS A 39 ? N CYS A 39 O ILE A 87 ? O ILE A 87 AA 2 3 N PHE A 88 ? N PHE A 88 O TYR A 81 ? O TYR A 81 AB 1 2 N ARG A 224 ? N ARG A 224 O LYS A 231 ? O LYS A 231 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE PG6 A 1281' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NA A 1282' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLN A 134 ? GLN A 134 . ? 1_555 ? 2 AC1 8 GLN A 172 ? GLN A 172 . ? 1_555 ? 3 AC1 8 GLY A 173 ? GLY A 173 . ? 1_555 ? 4 AC1 8 ILE A 175 ? ILE A 175 . ? 1_555 ? 5 AC1 8 TRP A 247 ? TRP A 247 . ? 1_555 ? 6 AC1 8 ASN A 249 ? ASN A 249 . ? 1_555 ? 7 AC1 8 LYS A 250 ? LYS A 250 . ? 1_555 ? 8 AC1 8 NA E . ? NA A 1282 . ? 1_555 ? 9 AC2 2 GLY A 173 ? GLY A 173 . ? 1_555 ? 10 AC2 2 PG6 D . ? PG6 A 1281 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VLA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VLA _atom_sites.fract_transf_matrix[1][1] 0.017765 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005970 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022807 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 MET 21 21 21 MET MET A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 CYS 110 110 110 CYS CYS A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 MET 119 119 119 MET MET A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 GLN 134 134 134 GLN GLN A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 GLN 137 137 137 GLN GLN A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLN 143 143 143 GLN GLN A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 ASP 149 149 149 ASP ASP A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 ASN 152 152 152 ASN ASN A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 GLN 154 154 154 GLN GLN A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 TYR 162 162 162 TYR TYR A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 GLN 169 169 169 GLN GLN A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 PRO 177 177 177 PRO PRO A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 GLU 182 182 182 GLU GLU A . n A 1 183 LYS 183 183 183 LYS LYS A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 ILE 185 185 185 ILE ILE A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 ARG 188 188 188 ARG ARG A . n A 1 189 SER 189 189 189 SER SER A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 ASP 191 191 191 ASP ASP A . n A 1 192 ILE 192 192 192 ILE ILE A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 VAL 196 196 196 VAL VAL A . n A 1 197 ARG 197 197 197 ARG ARG A . n A 1 198 HIS 198 198 198 HIS HIS A . n A 1 199 PRO 199 199 199 PRO PRO A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 GLU 202 202 202 GLU GLU A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 TYR 205 205 205 TYR TYR A . n A 1 206 SER 206 206 206 SER SER A . n A 1 207 MET 207 207 207 MET MET A . n A 1 208 GLN 208 208 208 GLN GLN A . n A 1 209 HIS 209 209 209 HIS HIS A . n A 1 210 ILE 210 210 210 ILE ILE A . n A 1 211 ARG 211 211 211 ARG ARG A . n A 1 212 GLU 212 212 212 GLU GLU A . n A 1 213 GLN 213 213 213 GLN GLN A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 ASN 215 215 215 ASN ASN A . n A 1 216 TYR 216 216 216 TYR TYR A . n A 1 217 LEU 217 217 217 LEU LEU A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 ASN 221 221 221 ASN ASN A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 ILE 223 223 223 ILE ILE A . n A 1 224 ARG 224 224 224 ARG ARG A . n A 1 225 ILE 225 225 225 ILE ILE A . n A 1 226 ASP 226 226 226 ASP ASP A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 ASN 233 233 233 ASN ASN A . n A 1 234 TYR 234 234 234 TYR TYR A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 GLU 236 236 236 GLU GLU A . n A 1 237 ALA 237 237 237 ALA ALA A . n A 1 238 GLU 238 238 238 GLU GLU A . n A 1 239 ASN 239 239 239 ASN ASN A . n A 1 240 ILE 240 240 240 ILE ILE A . n A 1 241 ASN 241 241 241 ASN ASN A . n A 1 242 TYR 242 242 242 TYR TYR A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 ALA 244 244 244 ALA ALA A . n A 1 245 GLN 245 245 245 GLN GLN A . n A 1 246 PHE 246 246 246 PHE PHE A . n A 1 247 TRP 247 247 247 TRP TRP A . n A 1 248 GLY 248 248 248 GLY GLY A . n A 1 249 ASN 249 249 249 ASN ASN A . n A 1 250 LYS 250 250 250 LYS LYS A . n A 1 251 PRO 251 251 251 PRO PRO A . n A 1 252 GLU 252 252 252 GLU GLU A . n A 1 253 PHE 253 253 253 PHE PHE A . n A 1 254 ASN 254 254 254 ASN ASN A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 TYR 256 256 256 TYR TYR A . n A 1 257 LYS 257 257 257 LYS LYS A . n A 1 258 TYR 258 258 258 TYR TYR A . n A 1 259 ASP 259 259 259 ASP ASP A . n A 1 260 PHE 260 260 260 PHE PHE A . n A 1 261 THR 261 261 261 THR THR A . n A 1 262 SER 262 262 262 SER SER A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 ASP 264 264 264 ASP ASP A . n A 1 265 ASP 265 265 265 ASP ASP A . n A 1 266 LYS 266 266 266 LYS LYS A . n A 1 267 LYS 267 267 267 LYS LYS A . n A 1 268 SER 268 268 268 SER SER A . n A 1 269 PHE 269 269 269 PHE PHE A . n A 1 270 PHE 270 270 270 PHE PHE A . n A 1 271 LYS 271 271 271 LYS LYS A . n A 1 272 ASP 272 272 272 ASP ASP A . n A 1 273 TRP 273 273 273 TRP TRP A . n A 1 274 GLN 274 274 274 GLN GLN A . n A 1 275 GLN 275 275 275 GLN GLN A . n A 1 276 TYR 276 276 276 TYR TYR A . n A 1 277 TYR 277 277 277 TYR TYR A . n A 1 278 SER 278 278 278 SER SER A . n A 1 279 ASN 279 279 279 ASN ASN A . n A 1 280 VAL 280 280 280 VAL VAL A . n A 1 281 ASN 281 281 ? ? ? A . n A 1 282 SER 282 282 ? ? ? A . n A 1 283 HIS 283 283 ? ? ? A . n A 1 284 LYS 284 284 ? ? ? A . n A 1 285 SER 285 285 ? ? ? A . n B 2 1 DG 1 101 101 DG DG L . n B 2 2 DG 2 102 102 DG DG L . n B 2 3 DT 3 103 103 DT DT L . n B 2 4 DA 4 104 104 DA DA L . n B 2 5 DC 5 105 105 DC DC L . n B 2 6 DC 6 106 106 DC DC L . n B 2 7 DC 7 107 107 DC DC L . n B 2 8 DG 8 108 108 DG DG L . n B 2 9 DT 9 109 109 DT DT L . n B 2 10 DG 10 110 110 DG DG L . n B 2 11 DG 11 111 111 DG DG L . n B 2 12 DA 12 112 112 DA DA L . n C 3 1 DT 1 201 201 DT DT M . n C 3 2 DC 2 202 202 DC DC M . n C 3 3 DC 3 203 203 DC DC M . n C 3 4 DA 4 204 204 DA DA M . n C 3 5 DC 5 205 205 DC DC M . n C 3 6 DG 6 206 206 DG DG M . n C 3 7 DG 7 207 207 DG DG M . n C 3 8 DG 8 208 208 DG DG M . n C 3 9 DT 9 209 209 DT DT M . n C 3 10 DA 10 210 210 DA DA M . n C 3 11 DC 11 211 211 DC DC M . n C 3 12 DC 12 212 212 DC DC M . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PG6 1 1281 1281 PG6 PG6 A . E 5 NA 1 1282 1282 NA NA A . F 6 HOH 1 2001 2001 HOH HOH A . F 6 HOH 2 2002 2002 HOH HOH A . F 6 HOH 3 2003 2003 HOH HOH A . F 6 HOH 4 2004 2004 HOH HOH A . F 6 HOH 5 2005 2005 HOH HOH A . F 6 HOH 6 2006 2006 HOH HOH A . F 6 HOH 7 2007 2007 HOH HOH A . F 6 HOH 8 2008 2008 HOH HOH A . F 6 HOH 9 2009 2009 HOH HOH A . F 6 HOH 10 2010 2010 HOH HOH A . F 6 HOH 11 2011 2011 HOH HOH A . F 6 HOH 12 2012 2012 HOH HOH A . F 6 HOH 13 2013 2013 HOH HOH A . F 6 HOH 14 2014 2014 HOH HOH A . F 6 HOH 15 2015 2015 HOH HOH A . F 6 HOH 16 2016 2016 HOH HOH A . F 6 HOH 17 2017 2017 HOH HOH A . F 6 HOH 18 2018 2018 HOH HOH A . F 6 HOH 19 2019 2019 HOH HOH A . F 6 HOH 20 2020 2020 HOH HOH A . F 6 HOH 21 2021 2021 HOH HOH A . F 6 HOH 22 2022 2022 HOH HOH A . F 6 HOH 23 2023 2023 HOH HOH A . F 6 HOH 24 2024 2024 HOH HOH A . F 6 HOH 25 2025 2025 HOH HOH A . F 6 HOH 26 2026 2026 HOH HOH A . F 6 HOH 27 2027 2027 HOH HOH A . F 6 HOH 28 2028 2028 HOH HOH A . F 6 HOH 29 2029 2029 HOH HOH A . F 6 HOH 30 2030 2030 HOH HOH A . F 6 HOH 31 2031 2031 HOH HOH A . F 6 HOH 32 2032 2032 HOH HOH A . F 6 HOH 33 2033 2033 HOH HOH A . F 6 HOH 34 2034 2034 HOH HOH A . F 6 HOH 35 2035 2035 HOH HOH A . F 6 HOH 36 2036 2036 HOH HOH A . F 6 HOH 37 2037 2037 HOH HOH A . F 6 HOH 38 2038 2038 HOH HOH A . F 6 HOH 39 2039 2039 HOH HOH A . F 6 HOH 40 2040 2040 HOH HOH A . F 6 HOH 41 2041 2041 HOH HOH A . F 6 HOH 42 2042 2042 HOH HOH A . F 6 HOH 43 2043 2043 HOH HOH A . F 6 HOH 44 2044 2044 HOH HOH A . F 6 HOH 45 2045 2045 HOH HOH A . F 6 HOH 46 2046 2046 HOH HOH A . F 6 HOH 47 2047 2047 HOH HOH A . F 6 HOH 48 2048 2048 HOH HOH A . F 6 HOH 49 2049 2049 HOH HOH A . F 6 HOH 50 2050 2050 HOH HOH A . F 6 HOH 51 2051 2051 HOH HOH A . F 6 HOH 52 2052 2052 HOH HOH A . F 6 HOH 53 2053 2053 HOH HOH A . F 6 HOH 54 2054 2054 HOH HOH A . F 6 HOH 55 2055 2055 HOH HOH A . F 6 HOH 56 2056 2056 HOH HOH A . F 6 HOH 57 2057 2057 HOH HOH A . F 6 HOH 58 2058 2058 HOH HOH A . F 6 HOH 59 2059 2059 HOH HOH A . F 6 HOH 60 2060 2060 HOH HOH A . F 6 HOH 61 2061 2061 HOH HOH A . F 6 HOH 62 2062 2062 HOH HOH A . F 6 HOH 63 2063 2063 HOH HOH A . F 6 HOH 64 2064 2064 HOH HOH A . F 6 HOH 65 2065 2065 HOH HOH A . F 6 HOH 66 2066 2066 HOH HOH A . F 6 HOH 67 2067 2067 HOH HOH A . F 6 HOH 68 2068 2068 HOH HOH A . F 6 HOH 69 2069 2069 HOH HOH A . F 6 HOH 70 2070 2070 HOH HOH A . F 6 HOH 71 2071 2071 HOH HOH A . F 6 HOH 72 2072 2072 HOH HOH A . F 6 HOH 73 2073 2073 HOH HOH A . F 6 HOH 74 2074 2074 HOH HOH A . F 6 HOH 75 2075 2075 HOH HOH A . F 6 HOH 76 2076 2076 HOH HOH A . F 6 HOH 77 2077 2077 HOH HOH A . F 6 HOH 78 2078 2078 HOH HOH A . F 6 HOH 79 2079 2079 HOH HOH A . F 6 HOH 80 2080 2080 HOH HOH A . F 6 HOH 81 2081 2081 HOH HOH A . F 6 HOH 82 2082 2082 HOH HOH A . F 6 HOH 83 2083 2083 HOH HOH A . F 6 HOH 84 2084 2084 HOH HOH A . F 6 HOH 85 2085 2085 HOH HOH A . F 6 HOH 86 2086 2086 HOH HOH A . F 6 HOH 87 2087 2087 HOH HOH A . F 6 HOH 88 2088 2088 HOH HOH A . F 6 HOH 89 2089 2089 HOH HOH A . F 6 HOH 90 2090 2090 HOH HOH A . F 6 HOH 91 2091 2091 HOH HOH A . F 6 HOH 92 2092 2092 HOH HOH A . F 6 HOH 93 2093 2093 HOH HOH A . F 6 HOH 94 2094 2094 HOH HOH A . F 6 HOH 95 2095 2095 HOH HOH A . F 6 HOH 96 2096 2096 HOH HOH A . F 6 HOH 97 2097 2097 HOH HOH A . F 6 HOH 98 2098 2098 HOH HOH A . F 6 HOH 99 2099 2099 HOH HOH A . F 6 HOH 100 2100 2100 HOH HOH A . F 6 HOH 101 2101 2101 HOH HOH A . F 6 HOH 102 2102 2102 HOH HOH A . F 6 HOH 103 2103 2103 HOH HOH A . F 6 HOH 104 2104 2104 HOH HOH A . F 6 HOH 105 2105 2105 HOH HOH A . F 6 HOH 106 2106 2106 HOH HOH A . F 6 HOH 107 2107 2107 HOH HOH A . F 6 HOH 108 2108 2108 HOH HOH A . F 6 HOH 109 2109 2109 HOH HOH A . F 6 HOH 110 2110 2110 HOH HOH A . F 6 HOH 111 2111 2111 HOH HOH A . F 6 HOH 112 2112 2112 HOH HOH A . F 6 HOH 113 2113 2113 HOH HOH A . F 6 HOH 114 2114 2114 HOH HOH A . F 6 HOH 115 2115 2115 HOH HOH A . F 6 HOH 116 2116 2116 HOH HOH A . F 6 HOH 117 2117 2117 HOH HOH A . F 6 HOH 118 2118 2118 HOH HOH A . F 6 HOH 119 2119 2119 HOH HOH A . F 6 HOH 120 2120 2120 HOH HOH A . F 6 HOH 121 2121 2121 HOH HOH A . F 6 HOH 122 2122 2122 HOH HOH A . F 6 HOH 123 2123 2123 HOH HOH A . F 6 HOH 124 2124 2124 HOH HOH A . F 6 HOH 125 2125 2125 HOH HOH A . F 6 HOH 126 2126 2126 HOH HOH A . F 6 HOH 127 2127 2127 HOH HOH A . F 6 HOH 128 2128 2128 HOH HOH A . F 6 HOH 129 2129 2129 HOH HOH A . F 6 HOH 130 2130 2130 HOH HOH A . F 6 HOH 131 2131 2131 HOH HOH A . F 6 HOH 132 2132 2132 HOH HOH A . F 6 HOH 133 2133 2133 HOH HOH A . F 6 HOH 134 2134 2134 HOH HOH A . F 6 HOH 135 2135 2135 HOH HOH A . F 6 HOH 136 2136 2136 HOH HOH A . F 6 HOH 137 2137 2137 HOH HOH A . F 6 HOH 138 2138 2138 HOH HOH A . F 6 HOH 139 2139 2139 HOH HOH A . F 6 HOH 140 2140 2140 HOH HOH A . F 6 HOH 141 2141 2141 HOH HOH A . F 6 HOH 142 2142 2142 HOH HOH A . F 6 HOH 143 2143 2143 HOH HOH A . F 6 HOH 144 2144 2144 HOH HOH A . F 6 HOH 145 2145 2145 HOH HOH A . F 6 HOH 146 2146 2146 HOH HOH A . F 6 HOH 147 2147 2147 HOH HOH A . F 6 HOH 148 2148 2148 HOH HOH A . F 6 HOH 149 2149 2149 HOH HOH A . F 6 HOH 150 2150 2150 HOH HOH A . F 6 HOH 151 2151 2151 HOH HOH A . F 6 HOH 152 2152 2152 HOH HOH A . F 6 HOH 153 2153 2153 HOH HOH A . F 6 HOH 154 2154 2154 HOH HOH A . F 6 HOH 155 2155 2155 HOH HOH A . F 6 HOH 156 2156 2156 HOH HOH A . F 6 HOH 157 2157 2157 HOH HOH A . F 6 HOH 158 2158 2158 HOH HOH A . F 6 HOH 159 2159 2159 HOH HOH A . F 6 HOH 160 2160 2160 HOH HOH A . F 6 HOH 161 2161 2161 HOH HOH A . F 6 HOH 162 2162 2162 HOH HOH A . F 6 HOH 163 2163 2163 HOH HOH A . F 6 HOH 164 2164 2164 HOH HOH A . F 6 HOH 165 2165 2165 HOH HOH A . F 6 HOH 166 2166 2166 HOH HOH A . F 6 HOH 167 2167 2167 HOH HOH A . F 6 HOH 168 2168 2168 HOH HOH A . F 6 HOH 169 2169 2169 HOH HOH A . F 6 HOH 170 2170 2170 HOH HOH A . F 6 HOH 171 2171 2171 HOH HOH A . F 6 HOH 172 2172 2172 HOH HOH A . F 6 HOH 173 2173 2173 HOH HOH A . F 6 HOH 174 2174 2174 HOH HOH A . F 6 HOH 175 2175 2175 HOH HOH A . F 6 HOH 176 2176 2176 HOH HOH A . F 6 HOH 177 2177 2177 HOH HOH A . F 6 HOH 178 2178 2178 HOH HOH A . F 6 HOH 179 2179 2179 HOH HOH A . F 6 HOH 180 2180 2180 HOH HOH A . F 6 HOH 181 2181 2181 HOH HOH A . F 6 HOH 182 2182 2182 HOH HOH A . F 6 HOH 183 2183 2183 HOH HOH A . F 6 HOH 184 2184 2184 HOH HOH A . F 6 HOH 185 2185 2185 HOH HOH A . F 6 HOH 186 2186 2186 HOH HOH A . F 6 HOH 187 2187 2187 HOH HOH A . F 6 HOH 188 2188 2188 HOH HOH A . F 6 HOH 189 2189 2189 HOH HOH A . F 6 HOH 190 2190 2190 HOH HOH A . F 6 HOH 191 2191 2191 HOH HOH A . F 6 HOH 192 2192 2192 HOH HOH A . F 6 HOH 193 2193 2193 HOH HOH A . F 6 HOH 194 2194 2194 HOH HOH A . F 6 HOH 195 2195 2195 HOH HOH A . F 6 HOH 196 2196 2196 HOH HOH A . F 6 HOH 197 2197 2197 HOH HOH A . F 6 HOH 198 2198 2198 HOH HOH A . F 6 HOH 199 2199 2199 HOH HOH A . F 6 HOH 200 2200 2200 HOH HOH A . F 6 HOH 201 2201 2201 HOH HOH A . F 6 HOH 202 2202 2202 HOH HOH A . F 6 HOH 203 2203 2203 HOH HOH A . F 6 HOH 204 2204 2204 HOH HOH A . F 6 HOH 205 2205 2205 HOH HOH A . F 6 HOH 206 2206 2206 HOH HOH A . F 6 HOH 207 2207 2207 HOH HOH A . F 6 HOH 208 2208 2208 HOH HOH A . F 6 HOH 209 2209 2209 HOH HOH A . F 6 HOH 210 2210 2210 HOH HOH A . F 6 HOH 211 2211 2211 HOH HOH A . F 6 HOH 212 2212 2212 HOH HOH A . F 6 HOH 213 2213 2213 HOH HOH A . F 6 HOH 214 2214 2214 HOH HOH A . F 6 HOH 215 2215 2215 HOH HOH A . F 6 HOH 216 2216 2216 HOH HOH A . F 6 HOH 217 2217 2217 HOH HOH A . F 6 HOH 218 2218 2218 HOH HOH A . F 6 HOH 219 2219 2219 HOH HOH A . F 6 HOH 220 2220 2220 HOH HOH A . F 6 HOH 221 2221 2221 HOH HOH A . F 6 HOH 222 2222 2222 HOH HOH A . F 6 HOH 223 2223 2223 HOH HOH A . F 6 HOH 224 2224 2224 HOH HOH A . F 6 HOH 225 2225 2225 HOH HOH A . F 6 HOH 226 2226 2226 HOH HOH A . F 6 HOH 227 2227 2227 HOH HOH A . F 6 HOH 228 2228 2228 HOH HOH A . F 6 HOH 229 2229 2229 HOH HOH A . F 6 HOH 230 2230 2230 HOH HOH A . F 6 HOH 231 2231 2231 HOH HOH A . F 6 HOH 232 2232 2232 HOH HOH A . F 6 HOH 233 2233 2233 HOH HOH A . F 6 HOH 234 2234 2234 HOH HOH A . F 6 HOH 235 2235 2235 HOH HOH A . F 6 HOH 236 2236 2236 HOH HOH A . F 6 HOH 237 2237 2237 HOH HOH A . F 6 HOH 238 2238 2238 HOH HOH A . F 6 HOH 239 2239 2239 HOH HOH A . F 6 HOH 240 2240 2240 HOH HOH A . F 6 HOH 241 2241 2241 HOH HOH A . F 6 HOH 242 2242 2242 HOH HOH A . F 6 HOH 243 2243 2243 HOH HOH A . F 6 HOH 244 2244 2244 HOH HOH A . F 6 HOH 245 2245 2245 HOH HOH A . F 6 HOH 246 2246 2246 HOH HOH A . F 6 HOH 247 2247 2247 HOH HOH A . F 6 HOH 248 2248 2248 HOH HOH A . F 6 HOH 249 2249 2249 HOH HOH A . F 6 HOH 250 2250 2250 HOH HOH A . F 6 HOH 251 2251 2251 HOH HOH A . F 6 HOH 252 2252 2252 HOH HOH A . F 6 HOH 253 2253 2253 HOH HOH A . F 6 HOH 254 2254 2254 HOH HOH A . F 6 HOH 255 2255 2255 HOH HOH A . F 6 HOH 256 2256 2256 HOH HOH A . F 6 HOH 257 2257 2257 HOH HOH A . F 6 HOH 258 2258 2258 HOH HOH A . F 6 HOH 259 2259 2259 HOH HOH A . F 6 HOH 260 2260 2260 HOH HOH A . F 6 HOH 261 2261 2261 HOH HOH A . F 6 HOH 262 2262 2262 HOH HOH A . F 6 HOH 263 2263 2263 HOH HOH A . F 6 HOH 264 2264 2264 HOH HOH A . F 6 HOH 265 2265 2265 HOH HOH A . F 6 HOH 266 2266 2266 HOH HOH A . F 6 HOH 267 2267 2267 HOH HOH A . F 6 HOH 268 2268 2268 HOH HOH A . F 6 HOH 269 2269 2269 HOH HOH A . F 6 HOH 270 2270 2270 HOH HOH A . F 6 HOH 271 2271 2271 HOH HOH A . F 6 HOH 272 2272 2272 HOH HOH A . F 6 HOH 273 2273 2273 HOH HOH A . F 6 HOH 274 2274 2274 HOH HOH A . F 6 HOH 275 2275 2275 HOH HOH A . F 6 HOH 276 2276 2276 HOH HOH A . F 6 HOH 277 2277 2277 HOH HOH A . F 6 HOH 278 2278 2278 HOH HOH A . F 6 HOH 279 2279 2279 HOH HOH A . F 6 HOH 280 2280 2280 HOH HOH A . F 6 HOH 281 2281 2281 HOH HOH A . F 6 HOH 282 2282 2282 HOH HOH A . F 6 HOH 283 2283 2283 HOH HOH A . F 6 HOH 284 2284 2284 HOH HOH A . F 6 HOH 285 2285 2285 HOH HOH A . F 6 HOH 286 2286 2286 HOH HOH A . F 6 HOH 287 2287 2287 HOH HOH A . F 6 HOH 288 2288 2288 HOH HOH A . F 6 HOH 289 2289 2289 HOH HOH A . F 6 HOH 290 2290 2290 HOH HOH A . F 6 HOH 291 2291 2291 HOH HOH A . F 6 HOH 292 2292 2292 HOH HOH A . F 6 HOH 293 2293 2293 HOH HOH A . F 6 HOH 294 2294 2294 HOH HOH A . F 6 HOH 295 2295 2295 HOH HOH A . F 6 HOH 296 2296 2296 HOH HOH A . F 6 HOH 297 2297 2297 HOH HOH A . F 6 HOH 298 2298 2298 HOH HOH A . F 6 HOH 299 2299 2299 HOH HOH A . F 6 HOH 300 2300 2300 HOH HOH A . F 6 HOH 301 2301 2301 HOH HOH A . F 6 HOH 302 2302 2302 HOH HOH A . F 6 HOH 303 2303 2303 HOH HOH A . F 6 HOH 304 2304 2304 HOH HOH A . F 6 HOH 305 2305 2305 HOH HOH A . F 6 HOH 306 2306 2306 HOH HOH A . F 6 HOH 307 2307 2307 HOH HOH A . F 6 HOH 308 2308 2308 HOH HOH A . F 6 HOH 309 2309 2309 HOH HOH A . F 6 HOH 310 2310 2310 HOH HOH A . F 6 HOH 311 2311 2311 HOH HOH A . F 6 HOH 312 2312 2312 HOH HOH A . F 6 HOH 313 2313 2313 HOH HOH A . F 6 HOH 314 2314 2314 HOH HOH A . F 6 HOH 315 2315 2315 HOH HOH A . F 6 HOH 316 2316 2316 HOH HOH A . F 6 HOH 317 2317 2317 HOH HOH A . F 6 HOH 318 2318 2318 HOH HOH A . F 6 HOH 319 2319 2319 HOH HOH A . F 6 HOH 320 2320 2320 HOH HOH A . F 6 HOH 321 2321 2321 HOH HOH A . F 6 HOH 322 2322 2322 HOH HOH A . F 6 HOH 323 2323 2323 HOH HOH A . F 6 HOH 324 2324 2324 HOH HOH A . F 6 HOH 325 2325 2325 HOH HOH A . F 6 HOH 326 2326 2326 HOH HOH A . F 6 HOH 327 2327 2327 HOH HOH A . F 6 HOH 328 2328 2328 HOH HOH A . F 6 HOH 329 2329 2329 HOH HOH A . F 6 HOH 330 2330 2330 HOH HOH A . F 6 HOH 331 2331 2331 HOH HOH A . F 6 HOH 332 2332 2332 HOH HOH A . F 6 HOH 333 2333 2333 HOH HOH A . F 6 HOH 334 2334 2334 HOH HOH A . F 6 HOH 335 2335 2335 HOH HOH A . F 6 HOH 336 2336 2336 HOH HOH A . F 6 HOH 337 2337 2337 HOH HOH A . F 6 HOH 338 2338 2338 HOH HOH A . F 6 HOH 339 2339 2339 HOH HOH A . F 6 HOH 340 2340 2340 HOH HOH A . F 6 HOH 341 2341 2341 HOH HOH A . F 6 HOH 342 2342 2342 HOH HOH A . F 6 HOH 343 2343 2343 HOH HOH A . F 6 HOH 344 2344 2344 HOH HOH A . F 6 HOH 345 2345 2345 HOH HOH A . F 6 HOH 346 2346 2346 HOH HOH A . F 6 HOH 347 2347 2347 HOH HOH A . G 6 HOH 1 2001 2001 HOH HOH L . G 6 HOH 2 2002 2002 HOH HOH L . G 6 HOH 3 2003 2003 HOH HOH L . G 6 HOH 4 2004 2004 HOH HOH L . G 6 HOH 5 2005 2005 HOH HOH L . G 6 HOH 6 2006 2006 HOH HOH L . G 6 HOH 7 2007 2007 HOH HOH L . G 6 HOH 8 2008 2008 HOH HOH L . G 6 HOH 9 2009 2009 HOH HOH L . G 6 HOH 10 2010 2010 HOH HOH L . G 6 HOH 11 2011 2011 HOH HOH L . G 6 HOH 12 2012 2012 HOH HOH L . G 6 HOH 13 2013 2013 HOH HOH L . G 6 HOH 14 2014 2014 HOH HOH L . G 6 HOH 15 2015 2015 HOH HOH L . G 6 HOH 16 2016 2016 HOH HOH L . G 6 HOH 17 2017 2017 HOH HOH L . G 6 HOH 18 2018 2018 HOH HOH L . G 6 HOH 19 2019 2019 HOH HOH L . G 6 HOH 20 2020 2020 HOH HOH L . G 6 HOH 21 2021 2021 HOH HOH L . G 6 HOH 22 2022 2022 HOH HOH L . G 6 HOH 23 2023 2023 HOH HOH L . G 6 HOH 24 2024 2024 HOH HOH L . G 6 HOH 25 2025 2025 HOH HOH L . G 6 HOH 26 2026 2026 HOH HOH L . G 6 HOH 27 2027 2027 HOH HOH L . G 6 HOH 28 2028 2028 HOH HOH L . G 6 HOH 29 2029 2029 HOH HOH L . G 6 HOH 30 2030 2030 HOH HOH L . G 6 HOH 31 2031 2031 HOH HOH L . G 6 HOH 32 2032 2032 HOH HOH L . G 6 HOH 33 2033 2033 HOH HOH L . G 6 HOH 34 2034 2034 HOH HOH L . G 6 HOH 35 2035 2035 HOH HOH L . G 6 HOH 36 2036 2036 HOH HOH L . G 6 HOH 37 2037 2037 HOH HOH L . G 6 HOH 38 2038 2038 HOH HOH L . G 6 HOH 39 2039 2039 HOH HOH L . G 6 HOH 40 2040 2040 HOH HOH L . G 6 HOH 41 2041 2041 HOH HOH L . G 6 HOH 42 2042 2042 HOH HOH L . G 6 HOH 43 2043 2043 HOH HOH L . G 6 HOH 44 2044 2044 HOH HOH L . G 6 HOH 45 2045 2045 HOH HOH L . G 6 HOH 46 2046 2046 HOH HOH L . G 6 HOH 47 2047 2047 HOH HOH L . G 6 HOH 48 2048 2048 HOH HOH L . G 6 HOH 49 2049 2049 HOH HOH L . G 6 HOH 50 2050 2050 HOH HOH L . G 6 HOH 51 2051 2051 HOH HOH L . G 6 HOH 52 2052 2052 HOH HOH L . G 6 HOH 53 2053 2053 HOH HOH L . G 6 HOH 54 2054 2054 HOH HOH L . G 6 HOH 55 2055 2055 HOH HOH L . G 6 HOH 56 2056 2056 HOH HOH L . G 6 HOH 57 2057 2057 HOH HOH L . H 6 HOH 1 2001 2001 HOH HOH M . H 6 HOH 2 2002 2002 HOH HOH M . H 6 HOH 3 2003 2003 HOH HOH M . H 6 HOH 4 2004 2004 HOH HOH M . H 6 HOH 5 2005 2005 HOH HOH M . H 6 HOH 6 2006 2006 HOH HOH M . H 6 HOH 7 2007 2007 HOH HOH M . H 6 HOH 8 2008 2008 HOH HOH M . H 6 HOH 9 2009 2009 HOH HOH M . H 6 HOH 10 2010 2010 HOH HOH M . H 6 HOH 11 2011 2011 HOH HOH M . H 6 HOH 12 2012 2012 HOH HOH M . H 6 HOH 13 2013 2013 HOH HOH M . H 6 HOH 14 2014 2014 HOH HOH M . H 6 HOH 15 2015 2015 HOH HOH M . H 6 HOH 16 2016 2016 HOH HOH M . H 6 HOH 17 2017 2017 HOH HOH M . H 6 HOH 18 2018 2018 HOH HOH M . H 6 HOH 19 2019 2019 HOH HOH M . H 6 HOH 20 2020 2020 HOH HOH M . H 6 HOH 21 2021 2021 HOH HOH M . H 6 HOH 22 2022 2022 HOH HOH M . H 6 HOH 23 2023 2023 HOH HOH M . H 6 HOH 24 2024 2024 HOH HOH M . H 6 HOH 25 2025 2025 HOH HOH M . H 6 HOH 26 2026 2026 HOH HOH M . H 6 HOH 27 2027 2027 HOH HOH M . H 6 HOH 28 2028 2028 HOH HOH M . H 6 HOH 29 2029 2029 HOH HOH M . H 6 HOH 30 2030 2030 HOH HOH M . H 6 HOH 31 2031 2031 HOH HOH M . H 6 HOH 32 2032 2032 HOH HOH M . H 6 HOH 33 2033 2033 HOH HOH M . H 6 HOH 34 2034 2034 HOH HOH M . H 6 HOH 35 2035 2035 HOH HOH M . H 6 HOH 36 2036 2036 HOH HOH M . H 6 HOH 37 2037 2037 HOH HOH M . H 6 HOH 38 2038 2038 HOH HOH M . H 6 HOH 39 2039 2039 HOH HOH M . H 6 HOH 40 2040 2040 HOH HOH M . H 6 HOH 41 2041 2041 HOH HOH M . H 6 HOH 42 2042 2042 HOH HOH M . H 6 HOH 43 2043 2043 HOH HOH M . H 6 HOH 44 2044 2044 HOH HOH M . H 6 HOH 45 2045 2045 HOH HOH M . H 6 HOH 46 2046 2046 HOH HOH M . H 6 HOH 47 2047 2047 HOH HOH M . H 6 HOH 48 2048 2048 HOH HOH M . H 6 HOH 49 2049 2049 HOH HOH M . H 6 HOH 50 2050 2050 HOH HOH M . H 6 HOH 51 2051 2051 HOH HOH M . H 6 HOH 52 2052 2052 HOH HOH M . H 6 HOH 53 2053 2053 HOH HOH M . H 6 HOH 54 2054 2054 HOH HOH M . H 6 HOH 55 2055 2055 HOH HOH M . H 6 HOH 56 2056 2056 HOH HOH M . H 6 HOH 57 2057 2057 HOH HOH M . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4650 ? 1 MORE -24.58 ? 1 'SSA (A^2)' 14890 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-06 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MLPHARE phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 176 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2232 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" L DT 103 ? ? "C1'" L DT 103 ? ? N1 L DT 103 ? ? 102.67 108.00 -5.33 0.70 N 2 1 "O4'" L DC 105 ? ? "C1'" L DC 105 ? ? N1 L DC 105 ? ? 110.71 108.30 2.41 0.30 N 3 1 "O4'" M DG 206 ? ? "C1'" M DG 206 ? ? N9 M DG 206 ? ? 110.42 108.30 2.12 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 72 ? ? -103.70 -61.77 2 1 GLN A 134 ? ? -162.32 104.36 3 1 GLN A 134 ? ? -163.35 102.27 4 1 VAL A 164 ? ? -121.84 -67.65 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2023 ? 6.49 . 2 1 O ? A HOH 2062 ? 6.43 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CB ? A MET 1 CB 2 1 Y 1 A MET 1 ? CG ? A MET 1 CG 3 1 Y 1 A MET 1 ? SD ? A MET 1 SD 4 1 Y 1 A MET 1 ? CE ? A MET 1 CE 5 1 Y 1 A LYS 41 ? CG ? A LYS 41 CG 6 1 Y 1 A LYS 41 ? CD ? A LYS 41 CD 7 1 Y 1 A LYS 41 ? CE ? A LYS 41 CE 8 1 Y 1 A LYS 41 ? NZ ? A LYS 41 NZ 9 1 Y 1 A LYS 46 ? CD ? A LYS 46 CD 10 1 Y 1 A LYS 46 ? CE ? A LYS 46 CE 11 1 Y 1 A LYS 46 ? NZ ? A LYS 46 NZ 12 1 Y 1 A ASP 84 ? CB ? A ASP 84 CB 13 1 Y 1 A ASP 84 ? CG ? A ASP 84 CG 14 1 Y 1 A ASP 84 ? OD1 ? A ASP 84 OD1 15 1 Y 1 A ASP 84 ? OD2 ? A ASP 84 OD2 16 1 Y 1 A GLU 85 ? CB ? A GLU 85 CB 17 1 Y 1 A GLU 85 ? CG ? A GLU 85 CG 18 1 Y 1 A GLU 85 ? CD ? A GLU 85 CD 19 1 Y 1 A GLU 85 ? OE1 ? A GLU 85 OE1 20 1 Y 1 A GLU 85 ? OE2 ? A GLU 85 OE2 21 1 Y 1 A LYS 132 ? CD ? A LYS 132 CD 22 1 Y 1 A LYS 132 ? CE ? A LYS 132 CE 23 1 Y 1 A LYS 132 ? NZ ? A LYS 132 NZ 24 1 Y 1 A ARG 235 ? CD ? A ARG 235 CD 25 1 Y 1 A ARG 235 ? NE ? A ARG 235 NE 26 1 Y 1 A ARG 235 ? CZ ? A ARG 235 CZ 27 1 Y 1 A ARG 235 ? NH1 ? A ARG 235 NH1 28 1 Y 1 A ARG 235 ? NH2 ? A ARG 235 NH2 29 1 Y 1 A LYS 267 ? CE ? A LYS 267 CE 30 1 Y 1 A LYS 267 ? NZ ? A LYS 267 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 281 ? A ASN 281 2 1 Y 1 A SER 282 ? A SER 282 3 1 Y 1 A HIS 283 ? A HIS 283 4 1 Y 1 A LYS 284 ? A LYS 284 5 1 Y 1 A SER 285 ? A SER 285 # _ndb_struct_conf_na.entry_id 2VLA _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 12 1_555 -0.136 -0.089 0.375 10.540 -5.141 -1.301 1 L_DG101:DC212_M L 101 ? M 212 ? 19 1 1 B DG 2 1_555 C DC 11 1_555 -0.147 -0.152 -0.104 -7.134 -16.155 0.694 2 L_DG102:DC211_M L 102 ? M 211 ? 19 1 1 B DT 3 1_555 C DA 10 1_555 -0.132 -0.085 0.063 -7.927 -7.763 -0.652 3 L_DT103:DA210_M L 103 ? M 210 ? 20 1 1 B DA 4 1_555 C DT 9 1_555 0.155 -0.109 0.141 8.072 -10.092 7.838 4 L_DA104:DT209_M L 104 ? M 209 ? 20 1 1 B DC 5 1_555 C DG 8 1_555 0.281 -0.131 -0.153 12.001 -19.828 0.246 5 L_DC105:DG208_M L 105 ? M 208 ? 19 1 1 B DC 6 1_555 C DG 7 1_555 0.124 -0.076 0.473 -15.611 -11.281 0.941 6 L_DC106:DG207_M L 106 ? M 207 ? 19 1 1 B DC 7 1_555 C DG 6 1_555 0.102 -0.072 0.120 -10.786 2.994 -0.239 7 L_DC107:DG206_M L 107 ? M 206 ? 19 1 1 B DG 8 1_555 C DC 5 1_555 -0.149 -0.141 0.087 -8.827 -16.659 -2.080 8 L_DG108:DC205_M L 108 ? M 205 ? 19 1 1 B DT 9 1_555 C DA 4 1_555 0.023 -0.159 0.241 -12.971 -3.900 2.611 9 L_DT109:DA204_M L 109 ? M 204 ? 20 1 1 B DG 10 1_555 C DC 3 1_555 -0.218 -0.076 -0.091 8.569 3.463 -1.727 10 L_DG110:DC203_M L 110 ? M 203 ? 19 1 1 B DG 11 1_555 C DC 2 1_555 -0.077 -0.112 0.151 8.904 -15.191 -3.829 11 L_DG111:DC202_M L 111 ? M 202 ? 19 1 1 B DA 12 1_555 C DT 1 1_555 -0.035 -0.106 0.155 5.519 -15.571 0.487 12 L_DA112:DT201_M L 112 ? M 201 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 12 1_555 B DG 2 1_555 C DC 11 1_555 -0.374 -0.832 3.667 2.449 1.637 41.871 -1.352 0.805 3.607 2.288 -3.422 41.970 1 LL_DG101DG102:DC211DC212_MM L 101 ? M 212 ? L 102 ? M 211 ? 1 B DG 2 1_555 C DC 11 1_555 B DT 3 1_555 C DA 10 1_555 0.115 0.355 3.268 -1.335 -7.432 39.064 1.375 -0.323 3.145 -10.989 1.974 39.759 2 LL_DG102DT103:DA210DC211_MM L 102 ? M 211 ? L 103 ? M 210 ? 1 B DT 3 1_555 C DA 10 1_555 B DA 4 1_555 C DT 9 1_555 0.513 0.812 2.941 -0.789 2.380 31.669 1.087 -1.068 2.979 4.353 1.444 31.766 3 LL_DT103DA104:DT209DA210_MM L 103 ? M 210 ? L 104 ? M 209 ? 1 B DA 4 1_555 C DT 9 1_555 B DC 5 1_555 C DG 8 1_555 -0.921 0.868 3.131 1.498 -2.964 38.343 1.663 1.572 3.022 -4.502 -2.275 38.481 4 LL_DA104DC105:DG208DT209_MM L 104 ? M 209 ? L 105 ? M 208 ? 1 B DC 5 1_555 C DG 8 1_555 B DC 6 1_555 C DG 7 1_555 0.150 -0.803 3.732 -2.754 6.079 44.001 -1.692 -0.484 3.581 8.058 3.650 44.479 5 LL_DC105DC106:DG207DG208_MM L 105 ? M 208 ? L 106 ? M 207 ? 1 B DC 6 1_555 C DG 7 1_555 B DC 7 1_555 C DG 6 1_555 0.661 0.514 3.226 2.430 -0.412 35.261 0.906 -0.734 3.257 -0.678 -4.006 35.344 6 LL_DC106DC107:DG206DG207_MM L 106 ? M 207 ? L 107 ? M 206 ? 1 B DC 7 1_555 C DG 6 1_555 B DG 8 1_555 C DC 5 1_555 -1.859 1.312 3.302 -3.387 -1.264 34.969 2.367 2.557 3.414 -2.097 5.618 35.149 7 LL_DC107DG108:DC205DG206_MM L 107 ? M 206 ? L 108 ? M 205 ? 1 B DG 8 1_555 C DC 5 1_555 B DT 9 1_555 C DA 4 1_555 1.337 0.512 3.453 -0.214 -2.690 38.756 1.114 -2.038 3.404 -4.047 0.323 38.846 8 LL_DG108DT109:DA204DC205_MM L 108 ? M 205 ? L 109 ? M 204 ? 1 B DT 9 1_555 C DA 4 1_555 B DG 10 1_555 C DC 3 1_555 0.265 0.910 2.992 3.730 1.951 31.166 1.340 0.159 3.052 3.611 -6.903 31.442 9 LL_DT109DG110:DC203DA204_MM L 109 ? M 204 ? L 110 ? M 203 ? 1 B DG 10 1_555 C DC 3 1_555 B DG 11 1_555 C DC 2 1_555 -1.342 0.869 3.410 -3.046 0.394 35.532 1.359 1.722 3.519 0.643 4.980 35.660 10 LL_DG110DG111:DC202DC203_MM L 110 ? M 203 ? L 111 ? M 202 ? 1 B DG 11 1_555 C DC 2 1_555 B DA 12 1_555 C DT 1 1_555 0.439 0.020 3.363 1.636 -3.013 39.125 0.400 -0.453 3.367 -4.489 -2.437 39.269 11 LL_DG111DA112:DT201DC202_MM L 111 ? M 202 ? L 112 ? M 201 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE' PG6 5 'SODIUM ION' NA 6 water HOH #