HEADER OXIDOREDUCTASE 21-JAN-08 2VM2 TITLE CRYSTAL STRUCTURE OF BARLEY THIOREDOXIN H ISOFORM 1 CRYSTALLIZED USING TITLE 2 PEG AS PRECIPITANT CAVEAT 2VM2 THE DATA IS MUCH LESS COMPLETE THAN REPORTED IN THE HEADER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN H ISOFORM 1.; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: THIOREDOXIN; COMPND 5 EC: 1.8.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE VAR. DISTICHUM; SOURCE 3 ORGANISM_COMMON: TWO-ROWED BARLEY; SOURCE 4 ORGANISM_TAXID: 112509; SOURCE 5 VARIANT: BARKE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS OXIDOREDUCTASE, PROTEIN DISULFIDE REDUCTASE, THIOREDOXIN-FOLD EXPDTA X-RAY DIFFRACTION AUTHOR K.MAEDA,P.HAGGLUND,C.FINNIE,B.SVENSSON,A.HENRIKSEN REVDAT 7 13-DEC-23 2VM2 1 REMARK REVDAT 6 12-JUL-17 2VM2 1 REVDAT 5 28-MAR-12 2VM2 1 CAVEAT REVDAT 4 13-JUL-11 2VM2 1 VERSN REVDAT 3 24-FEB-09 2VM2 1 VERSN REVDAT 2 17-JUN-08 2VM2 1 JRNL REMARK REVDAT 1 29-APR-08 2VM2 0 JRNL AUTH K.MAEDA,P.HAGGLUND,C.FINNIE,B.SVENSSON,A.HENRIKSEN JRNL TITL CRYSTAL STRUCTURES OF BARLEY THIOREDOXIN H ISOFORMS HVTRXH1 JRNL TITL 2 AND HVTRXH2 REVEAL FEATURES INVOLVED IN PROTEIN RECOGNITION JRNL TITL 3 AND POSSIBLY IN DISCRIMINATING THE ISOFORM SPECIFICITY. JRNL REF PROTEIN SCI. V. 17 1015 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18424513 JRNL DOI 10.1110/PS.083460308 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 44058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3329 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 544 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.224 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3466 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4695 ; 1.342 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 5.315 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;32.919 ;25.072 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;13.605 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.687 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2584 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1630 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2391 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 386 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2253 ; 0.821 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3553 ; 1.255 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1359 ; 2.209 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1142 ; 3.362 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0122 -12.6940 14.7724 REMARK 3 T TENSOR REMARK 3 T11: -0.1243 T22: -0.1024 REMARK 3 T33: -0.1091 T12: -0.0078 REMARK 3 T13: -0.0003 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.1555 L22: 1.6907 REMARK 3 L33: 1.4614 L12: -0.5317 REMARK 3 L13: 0.1976 L23: 0.1291 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.0365 S13: 0.0166 REMARK 3 S21: 0.0458 S22: 0.0256 S23: 0.0612 REMARK 3 S31: 0.0428 S32: 0.0083 S33: -0.0223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 90 REMARK 3 RESIDUE RANGE : B 92 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6270 -2.8708 44.1268 REMARK 3 T TENSOR REMARK 3 T11: -0.0886 T22: -0.0930 REMARK 3 T33: -0.1318 T12: 0.0085 REMARK 3 T13: 0.0193 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.9514 L22: 1.8904 REMARK 3 L33: 0.8541 L12: -0.9018 REMARK 3 L13: -0.2791 L23: 0.4711 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.0599 S13: -0.0095 REMARK 3 S21: 0.0036 S22: -0.0547 S23: 0.0092 REMARK 3 S31: 0.0174 S32: -0.0236 S33: 0.0249 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 98 REMARK 3 RESIDUE RANGE : C 102 C 118 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9099 -8.7181 46.6494 REMARK 3 T TENSOR REMARK 3 T11: -0.0598 T22: -0.0837 REMARK 3 T33: -0.1154 T12: 0.0133 REMARK 3 T13: 0.0081 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.3465 L22: 0.5884 REMARK 3 L33: 2.6799 L12: -0.2442 REMARK 3 L13: 1.2339 L23: -0.1547 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.0474 S13: 0.0230 REMARK 3 S21: -0.0410 S22: -0.0211 S23: 0.0171 REMARK 3 S31: -0.1947 S32: -0.0335 S33: 0.0458 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 113 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3240 -2.8982 -11.5450 REMARK 3 T TENSOR REMARK 3 T11: -0.1064 T22: -0.0570 REMARK 3 T33: -0.1321 T12: -0.0172 REMARK 3 T13: 0.0100 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.8781 L22: 1.0191 REMARK 3 L33: 2.3097 L12: 0.0048 REMARK 3 L13: -0.4626 L23: 0.0183 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.1278 S13: 0.1004 REMARK 3 S21: -0.0034 S22: 0.0329 S23: -0.0036 REMARK 3 S31: 0.0431 S32: 0.0876 S33: -0.0260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1290035029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1EP7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.86300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.83150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.86300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.83150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 116 REMARK 465 SER A 117 REMARK 465 THR A 118 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 5 REMARK 465 GLY B 91 REMARK 465 SER B 115 REMARK 465 ALA B 116 REMARK 465 SER B 117 REMARK 465 THR B 118 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 GLU C 4 REMARK 465 GLU C 5 REMARK 465 GLY C 99 REMARK 465 GLY C 100 REMARK 465 ARG C 101 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ALA D 3 REMARK 465 GLU D 4 REMARK 465 GLU D 5 REMARK 465 SER D 115 REMARK 465 ALA D 116 REMARK 465 SER D 117 REMARK 465 THR D 118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 115 CA C O CB OG REMARK 470 GLY B 114 CA C O REMARK 470 GLY D 114 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 70 72.13 -113.20 REMARK 500 LEU B 70 74.12 -116.49 REMARK 500 LEU C 70 71.63 -106.39 REMARK 500 LEU D 70 71.90 -114.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2019 DISTANCE = 6.95 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VM1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BARLEY THIOREDOXIN H ISOFORM 1 CRYSTALLIZED REMARK 900 USING AMMONIUM SULFATE AS PRECIPITANT DBREF 2VM2 A 1 118 UNP Q7XZK3 Q7XZK3_HORVD 1 118 DBREF 2VM2 B 1 118 UNP Q7XZK3 Q7XZK3_HORVD 1 118 DBREF 2VM2 C 1 118 UNP Q7XZK3 Q7XZK3_HORVD 1 118 DBREF 2VM2 D 1 118 UNP Q7XZK3 Q7XZK3_HORVD 1 118 SEQRES 1 A 118 MET ALA ALA GLU GLU GLY ALA VAL ILE ALA CYS HIS THR SEQRES 2 A 118 LYS GLN GLU PHE ASP THR HIS MET ALA ASN GLY LYS ASP SEQRES 3 A 118 THR GLY LYS LEU VAL ILE ILE ASP PHE THR ALA SER TRP SEQRES 4 A 118 CYS GLY PRO CYS ARG VAL ILE ALA PRO VAL PHE ALA GLU SEQRES 5 A 118 TYR ALA LYS LYS PHE PRO GLY ALA ILE PHE LEU LYS VAL SEQRES 6 A 118 ASP VAL ASP GLU LEU LYS ASP VAL ALA GLU ALA TYR ASN SEQRES 7 A 118 VAL GLU ALA MET PRO THR PHE LEU PHE ILE LYS ASP GLY SEQRES 8 A 118 GLU LYS VAL ASP SER VAL VAL GLY GLY ARG LYS ASP ASP SEQRES 9 A 118 ILE HIS THR LYS ILE VAL ALA LEU MET GLY SER ALA SER SEQRES 10 A 118 THR SEQRES 1 B 118 MET ALA ALA GLU GLU GLY ALA VAL ILE ALA CYS HIS THR SEQRES 2 B 118 LYS GLN GLU PHE ASP THR HIS MET ALA ASN GLY LYS ASP SEQRES 3 B 118 THR GLY LYS LEU VAL ILE ILE ASP PHE THR ALA SER TRP SEQRES 4 B 118 CYS GLY PRO CYS ARG VAL ILE ALA PRO VAL PHE ALA GLU SEQRES 5 B 118 TYR ALA LYS LYS PHE PRO GLY ALA ILE PHE LEU LYS VAL SEQRES 6 B 118 ASP VAL ASP GLU LEU LYS ASP VAL ALA GLU ALA TYR ASN SEQRES 7 B 118 VAL GLU ALA MET PRO THR PHE LEU PHE ILE LYS ASP GLY SEQRES 8 B 118 GLU LYS VAL ASP SER VAL VAL GLY GLY ARG LYS ASP ASP SEQRES 9 B 118 ILE HIS THR LYS ILE VAL ALA LEU MET GLY SER ALA SER SEQRES 10 B 118 THR SEQRES 1 C 118 MET ALA ALA GLU GLU GLY ALA VAL ILE ALA CYS HIS THR SEQRES 2 C 118 LYS GLN GLU PHE ASP THR HIS MET ALA ASN GLY LYS ASP SEQRES 3 C 118 THR GLY LYS LEU VAL ILE ILE ASP PHE THR ALA SER TRP SEQRES 4 C 118 CYS GLY PRO CYS ARG VAL ILE ALA PRO VAL PHE ALA GLU SEQRES 5 C 118 TYR ALA LYS LYS PHE PRO GLY ALA ILE PHE LEU LYS VAL SEQRES 6 C 118 ASP VAL ASP GLU LEU LYS ASP VAL ALA GLU ALA TYR ASN SEQRES 7 C 118 VAL GLU ALA MET PRO THR PHE LEU PHE ILE LYS ASP GLY SEQRES 8 C 118 GLU LYS VAL ASP SER VAL VAL GLY GLY ARG LYS ASP ASP SEQRES 9 C 118 ILE HIS THR LYS ILE VAL ALA LEU MET GLY SER ALA SER SEQRES 10 C 118 THR SEQRES 1 D 118 MET ALA ALA GLU GLU GLY ALA VAL ILE ALA CYS HIS THR SEQRES 2 D 118 LYS GLN GLU PHE ASP THR HIS MET ALA ASN GLY LYS ASP SEQRES 3 D 118 THR GLY LYS LEU VAL ILE ILE ASP PHE THR ALA SER TRP SEQRES 4 D 118 CYS GLY PRO CYS ARG VAL ILE ALA PRO VAL PHE ALA GLU SEQRES 5 D 118 TYR ALA LYS LYS PHE PRO GLY ALA ILE PHE LEU LYS VAL SEQRES 6 D 118 ASP VAL ASP GLU LEU LYS ASP VAL ALA GLU ALA TYR ASN SEQRES 7 D 118 VAL GLU ALA MET PRO THR PHE LEU PHE ILE LYS ASP GLY SEQRES 8 D 118 GLU LYS VAL ASP SER VAL VAL GLY GLY ARG LYS ASP ASP SEQRES 9 D 118 ILE HIS THR LYS ILE VAL ALA LEU MET GLY SER ALA SER SEQRES 10 D 118 THR FORMUL 5 HOH *544(H2 O) HELIX 1 1 THR A 13 GLY A 28 1 16 HELIX 2 2 CYS A 40 PHE A 57 1 18 HELIX 3 3 LEU A 70 TYR A 77 1 8 HELIX 4 4 ARG A 101 GLY A 114 1 14 HELIX 5 5 THR B 13 GLY B 28 1 16 HELIX 6 6 CYS B 40 PHE B 57 1 18 HELIX 7 7 LEU B 70 TYR B 77 1 8 HELIX 8 8 ARG B 101 MET B 113 1 13 HELIX 9 9 THR C 13 THR C 27 1 15 HELIX 10 10 GLY C 41 VAL C 45 5 5 HELIX 11 11 ILE C 46 PHE C 57 1 12 HELIX 12 12 LEU C 70 TYR C 77 1 8 HELIX 13 13 LYS C 102 MET C 113 1 12 HELIX 14 14 THR D 13 GLY D 28 1 16 HELIX 15 15 CYS D 40 PHE D 57 1 18 HELIX 16 16 LEU D 70 ASN D 78 1 9 HELIX 17 17 ARG D 101 MET D 113 1 13 SHEET 1 AA 5 ILE A 9 ALA A 10 0 SHEET 2 AA 5 ILE A 61 ASP A 66 1 O PHE A 62 N ILE A 9 SHEET 3 AA 5 VAL A 31 THR A 36 1 O ILE A 32 N LEU A 63 SHEET 4 AA 5 THR A 84 LYS A 89 -1 O THR A 84 N PHE A 35 SHEET 5 AA 5 GLU A 92 VAL A 98 -1 O GLU A 92 N LYS A 89 SHEET 1 BA 5 VAL B 8 CYS B 11 0 SHEET 2 BA 5 ILE B 61 ASP B 66 1 O PHE B 62 N ILE B 9 SHEET 3 BA 5 VAL B 31 THR B 36 1 O ILE B 32 N LEU B 63 SHEET 4 BA 5 THR B 84 ILE B 88 -1 O THR B 84 N PHE B 35 SHEET 5 BA 5 LYS B 93 VAL B 98 -1 N VAL B 94 O PHE B 87 SHEET 1 CA 5 ILE C 9 ALA C 10 0 SHEET 2 CA 5 ILE C 61 ASP C 66 1 O PHE C 62 N ILE C 9 SHEET 3 CA 5 VAL C 31 THR C 36 1 O ILE C 32 N LEU C 63 SHEET 4 CA 5 THR C 84 LYS C 89 -1 O THR C 84 N PHE C 35 SHEET 5 CA 5 GLU C 92 VAL C 97 -1 O GLU C 92 N LYS C 89 SHEET 1 DA 5 ILE D 9 ALA D 10 0 SHEET 2 DA 5 ILE D 61 ASP D 66 1 O PHE D 62 N ILE D 9 SHEET 3 DA 5 VAL D 31 THR D 36 1 O ILE D 32 N LEU D 63 SHEET 4 DA 5 THR D 84 LYS D 89 -1 O THR D 84 N PHE D 35 SHEET 5 DA 5 GLU D 92 VAL D 98 -1 O GLU D 92 N LYS D 89 SSBOND 1 CYS A 40 CYS A 43 1555 1555 2.91 SSBOND 2 CYS B 40 CYS B 43 1555 1555 2.13 SSBOND 3 CYS C 40 CYS C 43 1555 1555 2.48 SSBOND 4 CYS D 40 CYS D 43 1555 1555 2.07 CISPEP 1 MET A 82 PRO A 83 0 -3.89 CISPEP 2 MET A 82 PRO A 83 0 1.02 CISPEP 3 MET B 82 PRO B 83 0 -5.59 CISPEP 4 MET C 82 PRO C 83 0 -7.93 CISPEP 5 MET C 82 PRO C 83 0 -11.41 CISPEP 6 MET D 82 PRO D 83 0 -5.83 CISPEP 7 MET D 82 PRO D 83 0 -4.79 CRYST1 121.726 33.663 132.202 90.00 112.48 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008215 0.000000 0.003399 0.00000 SCALE2 0.000000 0.029706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008186 0.00000