HEADER RNA-BINDING PROTEIN 15-FEB-08 2VOD TITLE CRYSTAL STRUCTURE OF N-TERMINAL DOMAINS OF HUMAN LA PROTEIN TITLE 2 COMPLEXED WITH RNA OLIGOMER AUAUUUU COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUPUS LA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 4-194; COMPND 5 SYNONYM: HUMAN LA PROTEIN, SJOEGREN SYNDROME TYPE B COMPND 6 ANTIGEN, SS-B, LA RIBONUCLEOPROTEIN, LA AUTOANTIGEN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-R(*AP*UP*AP*UP*UP*UP*UP)-3'; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM11; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS RNA RECOGNITION MOTIF, SYSTEMIC LUPUS ERYTHEMATOSUS, KEYWDS 2 PHOSPHOPROTEIN, RNA MATURATION, RNA-BINDING PROTEIN, KEYWDS 3 NUCLEUS, LA MOTIF, RNA-BINDING, POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR O.KOTIK-KOGAN,E.R.VALENTINE,D.SANFELICE,M.R.CONTE,S.CURRY REVDAT 3 24-FEB-09 2VOD 1 VERSN REVDAT 2 01-JUL-08 2VOD 1 COMPND SOURCE AUTHOR JRNL REVDAT 2 2 REMARK MASTER REVDAT 1 06-MAY-08 2VOD 0 JRNL AUTH O.KOTIK-KOGAN,E.R.VALENTINE,D.SANFELICE,M.R.CONTE, JRNL AUTH 2 S.CURRY JRNL TITL STRUCTURAL ANALYSIS REVEALS CONFORMATIONAL JRNL TITL 2 PLASTICITY IN THE RECOGNITION OF RNA 3' ENDS BY JRNL TITL 3 THE HUMAN LA PROTEIN. JRNL REF STRUCTURE V. 16 852 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18547518 JRNL DOI 10.1016/J.STR.2008.02.021 REMARK 2 REMARK 2 RESOLUTION. 2.1 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1693840.83 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 28656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.9 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.3 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4467 REMARK 3 BIN R VALUE (WORKING SET) : 0.270 REMARK 3 BIN FREE R VALUE : 0.308 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.3 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 250 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3062 REMARK 3 NUCLEIC ACID ATOMS : 282 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.96 REMARK 3 B22 (A**2) : -6.85 REMARK 3 B33 (A**2) : 0.89 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 4.04 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.2 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.1 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.95 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.67 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.56 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.66 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.72 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.4 REMARK 3 BSOL : 43.9873 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA-MULTI-ENDO-12.SC.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.ED-12.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA-MULTI-ENDO-12.SC.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.ED-12.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2VOD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-08. REMARK 100 THE PDBE ID CODE IS EBI-35328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87026 REMARK 200 MONOCHROMATOR : SINGLE SILICON (111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 43.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.7 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.7 REMARK 200 R MERGE FOR SHELL (I) : 0.41 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.01450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.23550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.01450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.23550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 193 REMARK 465 GLU A 194 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 193 REMARK 465 GLU B 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LYS A 165 CD CE NZ REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 LYS B 74 CD CE NZ REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 LYS B 86 CE NZ REMARK 470 LYS B 116 CD CE NZ REMARK 470 LYS B 148 CD CE NZ REMARK 470 LYS B 165 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 73 C SER B 73 O -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 62 149.44 -179.73 REMARK 500 GLU A 132 0.57 -60.77 REMARK 500 ASP B 6 101.38 155.44 REMARK 500 GLU B 132 -33.76 -20.64 REMARK 500 LYS B 176 68.84 36.67 REMARK 500 GLU B 177 -24.50 91.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S7A RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE LA MOTIF OF HUMAN REMARK 900 LA PROTEIN REMARK 900 RELATED ID: 1YTY RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3 REMARK 900 '-TERMINII OFNASCENT RNA POL III TRANSCRIPTS REMARK 900 BY LA AUTOANTIGEN REMARK 900 RELATED ID: 1ZH5 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3 REMARK 900 '-TERMINII OFNASCENT RNA POL III TRANSCRIPTS REMARK 900 BY LA AUTOANTIGEN REMARK 900 RELATED ID: 1S79 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE CENTRAL RRM OF REMARK 900 HUMAN LA PROTEIN REMARK 900 RELATED ID: 2VOO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF N-TERMINAL DOMAINS OF REMARK 900 HUMAN LA PROTEIN COMPLEXED WITH RNA OLIGOMER REMARK 900 UUUUUUUU REMARK 900 RELATED ID: 2VOP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF N-TERMINAL DOMAINS OF REMARK 900 HUMAN LA PROTEIN COMPLEXED WITH RNA OLIGOMER REMARK 900 AUUUU REMARK 900 RELATED ID: 2VON RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF N-TERMINAL DOMAINS OF REMARK 900 HUMAN LA PROTEIN COMPLEXED WITH RNA OLIGOMER REMARK 900 AUAUUUU REMARK 900 RELATED ID: 1OWX RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE C-TERMINAL RRM REMARK 900 OF HUMAN LA (LA225-334) REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST TWO RESIDUES ARE FROM VECTOR (GS) REMAINING SEQUENCE REMARK 999 CORRESPONDS TO RESIDUES 4-194 DBREF 2VOD A 2 3 PDB 2VOD 2VOD 2 3 DBREF 2VOD A 4 194 UNP P05455 LA_HUMAN 4 194 DBREF 2VOD B 2 3 PDB 2VOD 2VOD 2 3 DBREF 2VOD B 4 194 UNP P05455 LA_HUMAN 4 194 DBREF 2VOD C -7 -1 PDB 2VOD 2VOD -7 -1 DBREF 2VOD D -7 -1 PDB 2VOD 2VOD -7 -1 SEQRES 1 A 193 GLY SER ASN GLY ASP ASN GLU LYS MET ALA ALA LEU GLU SEQRES 2 A 193 ALA LYS ILE CYS HIS GLN ILE GLU TYR TYR PHE GLY ASP SEQRES 3 A 193 PHE ASN LEU PRO ARG ASP LYS PHE LEU LYS GLU GLN ILE SEQRES 4 A 193 LYS LEU ASP GLU GLY TRP VAL PRO LEU GLU ILE MET ILE SEQRES 5 A 193 LYS PHE ASN ARG LEU ASN ARG LEU THR THR ASP PHE ASN SEQRES 6 A 193 VAL ILE VAL GLU ALA LEU SER LYS SER LYS ALA GLU LEU SEQRES 7 A 193 MET GLU ILE SER GLU ASP LYS THR LYS ILE ARG ARG SER SEQRES 8 A 193 PRO SER LYS PRO LEU PRO GLU VAL THR ASP GLU TYR LYS SEQRES 9 A 193 ASN ASP VAL LYS ASN ARG SER VAL TYR ILE LYS GLY PHE SEQRES 10 A 193 PRO THR ASP ALA THR LEU ASP ASP ILE LYS GLU TRP LEU SEQRES 11 A 193 GLU ASP LYS GLY GLN VAL LEU ASN ILE GLN MET ARG ARG SEQRES 12 A 193 THR LEU HIS LYS ALA PHE LYS GLY SER ILE PHE VAL VAL SEQRES 13 A 193 PHE ASP SER ILE GLU SER ALA LYS LYS PHE VAL GLU THR SEQRES 14 A 193 PRO GLY GLN LYS TYR LYS GLU THR ASP LEU LEU ILE LEU SEQRES 15 A 193 PHE LYS ASP ASP TYR PHE ALA LYS LYS ASN GLU SEQRES 1 B 193 GLY SER ASN GLY ASP ASN GLU LYS MET ALA ALA LEU GLU SEQRES 2 B 193 ALA LYS ILE CYS HIS GLN ILE GLU TYR TYR PHE GLY ASP SEQRES 3 B 193 PHE ASN LEU PRO ARG ASP LYS PHE LEU LYS GLU GLN ILE SEQRES 4 B 193 LYS LEU ASP GLU GLY TRP VAL PRO LEU GLU ILE MET ILE SEQRES 5 B 193 LYS PHE ASN ARG LEU ASN ARG LEU THR THR ASP PHE ASN SEQRES 6 B 193 VAL ILE VAL GLU ALA LEU SER LYS SER LYS ALA GLU LEU SEQRES 7 B 193 MET GLU ILE SER GLU ASP LYS THR LYS ILE ARG ARG SER SEQRES 8 B 193 PRO SER LYS PRO LEU PRO GLU VAL THR ASP GLU TYR LYS SEQRES 9 B 193 ASN ASP VAL LYS ASN ARG SER VAL TYR ILE LYS GLY PHE SEQRES 10 B 193 PRO THR ASP ALA THR LEU ASP ASP ILE LYS GLU TRP LEU SEQRES 11 B 193 GLU ASP LYS GLY GLN VAL LEU ASN ILE GLN MET ARG ARG SEQRES 12 B 193 THR LEU HIS LYS ALA PHE LYS GLY SER ILE PHE VAL VAL SEQRES 13 B 193 PHE ASP SER ILE GLU SER ALA LYS LYS PHE VAL GLU THR SEQRES 14 B 193 PRO GLY GLN LYS TYR LYS GLU THR ASP LEU LEU ILE LEU SEQRES 15 B 193 PHE LYS ASP ASP TYR PHE ALA LYS LYS ASN GLU SEQRES 1 C 7 A U A U U U U SEQRES 1 D 7 A U A U U U U FORMUL 5 HOH *164(H2 O1) HELIX 1 1 ASP A 6 PHE A 25 1 20 HELIX 2 2 ASN A 29 ARG A 32 5 4 HELIX 3 3 ASP A 33 ASP A 43 1 11 HELIX 4 4 LEU A 49 ILE A 53 1 5 HELIX 5 5 PHE A 55 THR A 62 1 8 HELIX 6 6 ASP A 64 SER A 75 1 12 HELIX 7 7 THR A 101 ASN A 110 1 10 HELIX 8 8 THR A 123 GLU A 132 1 10 HELIX 9 9 SER A 160 THR A 170 1 11 HELIX 10 10 LYS A 185 LYS A 192 1 8 HELIX 11 11 ASP B 6 PHE B 25 1 20 HELIX 12 12 ASN B 29 ARG B 32 5 4 HELIX 13 13 ASP B 33 ASP B 43 1 11 HELIX 14 14 LEU B 49 ILE B 53 1 5 HELIX 15 15 PHE B 55 THR B 62 1 8 HELIX 16 16 ASP B 64 LEU B 72 1 9 HELIX 17 17 THR B 101 ARG B 111 1 11 HELIX 18 18 THR B 123 GLU B 132 1 10 HELIX 19 19 SER B 160 THR B 170 1 11 HELIX 20 20 LYS B 185 LYS B 191 1 7 SHEET 1 AA 3 VAL A 47 PRO A 48 0 SHEET 2 AA 3 LYS A 88 ARG A 91 -1 O ILE A 89 N VAL A 47 SHEET 3 AA 3 MET A 80 ILE A 82 -1 O GLU A 81 N ARG A 90 SHEET 1 AB 4 VAL A 137 ARG A 144 0 SHEET 2 AB 4 PHE A 150 PHE A 158 -1 N LYS A 151 O ARG A 143 SHEET 3 AB 4 SER A 112 LYS A 116 -1 O VAL A 113 N VAL A 156 SHEET 4 AB 4 LEU A 181 PHE A 184 -1 O LEU A 181 N LYS A 116 SHEET 1 BA 3 VAL B 47 PRO B 48 0 SHEET 2 BA 3 LYS B 88 ARG B 91 -1 O ILE B 89 N VAL B 47 SHEET 3 BA 3 MET B 80 ILE B 82 -1 O GLU B 81 N ARG B 90 SHEET 1 BB 4 VAL B 137 ARG B 144 0 SHEET 2 BB 4 PHE B 150 PHE B 158 -1 N LYS B 151 O ARG B 143 SHEET 3 BB 4 SER B 112 LYS B 116 -1 O VAL B 113 N VAL B 156 SHEET 4 BB 4 LEU B 181 PHE B 184 -1 O LEU B 181 N LYS B 116 SHEET 1 BC 2 LYS B 174 TYR B 175 0 SHEET 2 BC 2 THR B 178 ASP B 179 -1 O THR B 178 N TYR B 175 CRYST1 140.029 44.471 91.285 90.00 114.35 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007141 0.000000 0.003232 0.00000 SCALE2 0.000000 0.022487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012024 0.00000 MTRIX1 1 -0.646000 0.016700 -0.763100 -6.85920 1 MTRIX2 1 -0.012400 -0.999900 -0.011400 -35.51050 1 MTRIX3 1 -0.763200 0.002100 0.646200 14.71690 1