data_2VOG # _entry.id 2VOG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VOG PDBE EBI-35336 WWPDB D_1290035336 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2VOF unspecified 'STRUCTURE OF MOUSE A1 BOUND TO THE PUMA BH3-DOMAIN' PDB 2VOH unspecified 'STRUCTURE OF MOUSE A1 BOUND TO THE BAK BH3-DOMAIN' PDB 2VOI unspecified 'STRUCTURE OF MOUSE A1 BOUND TO THE BID BH3-DOMAIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VOG _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-02-17 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Smits, C.' 1 'Czabotar, P.E.' 2 'Hinds, M.G.' 3 'Day, C.L.' 4 # _citation.id primary _citation.title 'Structural Plasticity Underpins Promiscuous Binding of the Prosurvival Protein A1.' _citation.journal_abbrev Structure _citation.journal_volume 16 _citation.page_first 818 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18462686 _citation.pdbx_database_id_DOI 10.1016/J.STR.2008.02.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Smits, C.' 1 primary 'Czabotar, P.E.' 2 primary 'Hinds, M.G.' 3 primary 'Day, C.L.' 4 # _cell.entry_id 2VOG _cell.length_a 66.654 _cell.length_b 68.050 _cell.length_c 32.136 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VOG _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BCL-2-RELATED PROTEIN A1' 17922.418 1 ? YES 'RESIDUES 1-152' ? 2 polymer man 'BCL-2-MODIFYING FACTOR' 3275.765 1 ? ? 'BH3-DOMAIN, RESIDUES 126-152' 'C-TERMINAL HOMOSERINE LACTONE DUE TO CNBR CLEAVAGE.' 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 49 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PROTEIN BFL-1, HEMOPOIETIC-SPECIFIC EARLY RESPONSE PROTEIN, A1-A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSMAESELMHIHSLAEHYLQYVLQVPAFESAPSQACRVLQRVAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVM EKEFEDGIINWGRIVTIFAFGGVLLKKLKQEQIALDVSAYKQVSSFVAEFIMNNTGEWIRQNGGWEDGFIKKFEPKS ; ;GPLGSMAESELMHIHSLAEHYLQYVLQVPAFESAPSQACRVLQRVAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVM EKEFEDGIINWGRIVTIFAFGGVLLKKLKQEQIALDVSAYKQVSSFVAEFIMNNTGEWIRQNGGWEDGFIKKFEPKS ; A ? 2 'polypeptide(L)' no no LQHRAEVQIARKLQCIADQFHRLHTQQ LQHRAEVQIARKLQCIADQFHRLHTQQ B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 MET n 1 7 ALA n 1 8 GLU n 1 9 SER n 1 10 GLU n 1 11 LEU n 1 12 MET n 1 13 HIS n 1 14 ILE n 1 15 HIS n 1 16 SER n 1 17 LEU n 1 18 ALA n 1 19 GLU n 1 20 HIS n 1 21 TYR n 1 22 LEU n 1 23 GLN n 1 24 TYR n 1 25 VAL n 1 26 LEU n 1 27 GLN n 1 28 VAL n 1 29 PRO n 1 30 ALA n 1 31 PHE n 1 32 GLU n 1 33 SER n 1 34 ALA n 1 35 PRO n 1 36 SER n 1 37 GLN n 1 38 ALA n 1 39 CYS n 1 40 ARG n 1 41 VAL n 1 42 LEU n 1 43 GLN n 1 44 ARG n 1 45 VAL n 1 46 ALA n 1 47 PHE n 1 48 SER n 1 49 VAL n 1 50 GLN n 1 51 LYS n 1 52 GLU n 1 53 VAL n 1 54 GLU n 1 55 LYS n 1 56 ASN n 1 57 LEU n 1 58 LYS n 1 59 SER n 1 60 TYR n 1 61 LEU n 1 62 ASP n 1 63 ASP n 1 64 PHE n 1 65 HIS n 1 66 VAL n 1 67 GLU n 1 68 SER n 1 69 ILE n 1 70 ASP n 1 71 THR n 1 72 ALA n 1 73 ARG n 1 74 ILE n 1 75 ILE n 1 76 PHE n 1 77 ASN n 1 78 GLN n 1 79 VAL n 1 80 MET n 1 81 GLU n 1 82 LYS n 1 83 GLU n 1 84 PHE n 1 85 GLU n 1 86 ASP n 1 87 GLY n 1 88 ILE n 1 89 ILE n 1 90 ASN n 1 91 TRP n 1 92 GLY n 1 93 ARG n 1 94 ILE n 1 95 VAL n 1 96 THR n 1 97 ILE n 1 98 PHE n 1 99 ALA n 1 100 PHE n 1 101 GLY n 1 102 GLY n 1 103 VAL n 1 104 LEU n 1 105 LEU n 1 106 LYS n 1 107 LYS n 1 108 LEU n 1 109 LYS n 1 110 GLN n 1 111 GLU n 1 112 GLN n 1 113 ILE n 1 114 ALA n 1 115 LEU n 1 116 ASP n 1 117 VAL n 1 118 SER n 1 119 ALA n 1 120 TYR n 1 121 LYS n 1 122 GLN n 1 123 VAL n 1 124 SER n 1 125 SER n 1 126 PHE n 1 127 VAL n 1 128 ALA n 1 129 GLU n 1 130 PHE n 1 131 ILE n 1 132 MET n 1 133 ASN n 1 134 ASN n 1 135 THR n 1 136 GLY n 1 137 GLU n 1 138 TRP n 1 139 ILE n 1 140 ARG n 1 141 GLN n 1 142 ASN n 1 143 GLY n 1 144 GLY n 1 145 TRP n 1 146 GLU n 1 147 ASP n 1 148 GLY n 1 149 PHE n 1 150 ILE n 1 151 LYS n 1 152 LYS n 1 153 PHE n 1 154 GLU n 1 155 PRO n 1 156 LYS n 1 157 SER n 2 1 LEU n 2 2 GLN n 2 3 HIS n 2 4 ARG n 2 5 ALA n 2 6 GLU n 2 7 VAL n 2 8 GLN n 2 9 ILE n 2 10 ALA n 2 11 ARG n 2 12 LYS n 2 13 LEU n 2 14 GLN n 2 15 CYS n 2 16 ILE n 2 17 ALA n 2 18 ASP n 2 19 GLN n 2 20 PHE n 2 21 HIS n 2 22 ARG n 2 23 LEU n 2 24 HIS n 2 25 THR n 2 26 GLN n 2 27 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? MOUSE ? ? ? ? ? ? ? ? 'MUS MUSCULUS' 10090 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' 'PSJS 1240' ? ? ? ? ? ? PLASMID ? ? ? 'PGEX 6P-3' ? ? 2 1 sample ? ? ? MOUSE ? ? ? ? ? ? ? ? 'MUS MUSCULUS' 10090 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? 'PET31B BMF' ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VOG 1 ? ? 2VOG ? 2 UNP B2LA1_MOUSE 1 ? ? Q07440 ? 3 UNP BMF_MOUSE 2 ? ? Q91ZE9 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VOG A 1 ? 5 ? 2VOG -4 ? 0 ? -4 0 2 2 2VOG A 6 ? 157 ? Q07440 1 ? 152 ? 1 152 3 3 2VOG B 1 ? 27 ? Q91ZE9 126 ? 152 ? 126 152 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2VOG LYS A 109 ? UNP Q07440 PRO 104 'engineered mutation' 104 1 1 2VOG SER A 118 ? UNP Q07440 CYS 113 'engineered mutation' 113 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VOG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.72 _exptl_crystal.density_percent_sol 29 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '18% PEG 2000, 0.88 M LICL, 0.1 M CITRIC ACID, KOH (PH 4.35)' # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU IMAGE PLATE' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VOG _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 23.81 _reflns.d_resolution_high 1.90 _reflns.number_obs 12089 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.10 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.90 _reflns_shell.pdbx_redundancy 3.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VOG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 11512 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.81 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.191 _refine.ls_R_factor_R_free 0.231 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 577 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 26.59 _refine.aniso_B[1][1] 0.56000 _refine.aniso_B[2][2] -0.38000 _refine.aniso_B[3][3] -0.18000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2VOF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.179 _refine.pdbx_overall_ESU_R_Free 0.155 _refine.overall_SU_ML 0.104 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.251 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1343 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 1394 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 23.81 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1368 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1230 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.256 1.922 ? 1842 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.862 3.000 ? 2852 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.831 5.000 ? 164 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.816 24.930 ? 71 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.537 15.000 ? 243 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.617 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 203 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1518 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 285 'X-RAY DIFFRACTION' ? r_nbd_refined 0.228 0.200 ? 313 'X-RAY DIFFRACTION' ? r_nbd_other 0.161 0.200 ? 1181 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.187 0.200 ? 694 'X-RAY DIFFRACTION' ? r_nbtor_other 0.080 0.200 ? 740 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.172 0.200 ? 43 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.072 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.164 0.200 ? 40 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.137 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.071 1.500 ? 905 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.402 2.000 ? 1319 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.443 3.000 ? 597 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.558 4.500 ? 523 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.95 _refine_ls_shell.number_reflns_R_work 825 _refine_ls_shell.R_factor_R_work 0.2430 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3620 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VOG _struct.title 'Structure of mouse A1 bound to the Bmf BH3-domain' _struct.pdbx_descriptor 'BCL-2-RELATED PROTEIN A1, BCL-2-MODIFYING FACTOR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VOG _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'PROTEIN-PROTEIN COMPLEX, BH3, BCL-2, APOPTOSIS, PRO-SURVIVAL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? LEU A 26 ? GLY A -1 LEU A 21 1 ? 23 HELX_P HELX_P2 2 SER A 36 ? LEU A 57 ? SER A 31 LEU A 52 1 ? 22 HELX_P HELX_P3 3 LEU A 57 ? ASP A 62 ? LEU A 52 ASP A 57 1 ? 6 HELX_P HELX_P4 4 SER A 68 ? PHE A 84 ? SER A 63 PHE A 79 1 ? 17 HELX_P HELX_P5 5 GLU A 85 ? GLY A 87 ? GLU A 80 GLY A 82 5 ? 3 HELX_P HELX_P6 6 ASN A 90 ? GLN A 112 ? ASN A 85 GLN A 107 1 ? 23 HELX_P HELX_P7 7 SER A 118 ? ASN A 142 ? SER A 113 ASN A 137 1 ? 25 HELX_P HELX_P8 8 GLY A 143 ? GLY A 148 ? GLY A 138 GLY A 143 1 ? 6 HELX_P HELX_P9 9 PHE A 149 ? GLU A 154 ? PHE A 144 GLU A 149 5 ? 6 HELX_P HELX_P10 10 ARG B 4 ? THR B 25 ? ARG B 129 THR B 150 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A1150' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A1151' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TRP A 91 ? TRP A 86 . ? 1_555 ? 2 AC1 4 GLY A 92 ? GLY A 87 . ? 1_555 ? 3 AC1 4 HOH E . ? HOH A 2026 . ? 1_555 ? 4 AC1 4 HIS B 21 ? HIS B 146 . ? 1_555 ? 5 AC2 2 MET A 12 ? MET A 7 . ? 1_555 ? 6 AC2 2 HIS A 15 ? HIS A 10 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VOG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VOG _atom_sites.fract_transf_matrix[1][1] 0.015003 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014695 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031118 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? A . n A 1 2 PRO 2 -3 ? ? ? A . n A 1 3 LEU 3 -2 ? ? ? A . n A 1 4 GLY 4 -1 -1 GLY GLY A . n A 1 5 SER 5 0 0 SER SER A . n A 1 6 MET 6 1 1 MET MET A . n A 1 7 ALA 7 2 2 ALA ALA A . n A 1 8 GLU 8 3 3 GLU GLU A . n A 1 9 SER 9 4 4 SER SER A . n A 1 10 GLU 10 5 5 GLU GLU A . n A 1 11 LEU 11 6 6 LEU LEU A . n A 1 12 MET 12 7 7 MET MET A . n A 1 13 HIS 13 8 8 HIS HIS A . n A 1 14 ILE 14 9 9 ILE ILE A . n A 1 15 HIS 15 10 10 HIS HIS A . n A 1 16 SER 16 11 11 SER SER A . n A 1 17 LEU 17 12 12 LEU LEU A . n A 1 18 ALA 18 13 13 ALA ALA A . n A 1 19 GLU 19 14 14 GLU GLU A . n A 1 20 HIS 20 15 15 HIS HIS A . n A 1 21 TYR 21 16 16 TYR TYR A . n A 1 22 LEU 22 17 17 LEU LEU A . n A 1 23 GLN 23 18 18 GLN GLN A . n A 1 24 TYR 24 19 19 TYR TYR A . n A 1 25 VAL 25 20 20 VAL VAL A . n A 1 26 LEU 26 21 21 LEU LEU A . n A 1 27 GLN 27 22 22 GLN GLN A . n A 1 28 VAL 28 23 23 VAL VAL A . n A 1 29 PRO 29 24 24 PRO PRO A . n A 1 30 ALA 30 25 ? ? ? A . n A 1 31 PHE 31 26 ? ? ? A . n A 1 32 GLU 32 27 ? ? ? A . n A 1 33 SER 33 28 ? ? ? A . n A 1 34 ALA 34 29 ? ? ? A . n A 1 35 PRO 35 30 ? ? ? A . n A 1 36 SER 36 31 31 SER SER A . n A 1 37 GLN 37 32 32 GLN GLN A . n A 1 38 ALA 38 33 33 ALA ALA A . n A 1 39 CYS 39 34 34 CYS CYS A . n A 1 40 ARG 40 35 35 ARG ARG A . n A 1 41 VAL 41 36 36 VAL VAL A . n A 1 42 LEU 42 37 37 LEU LEU A . n A 1 43 GLN 43 38 38 GLN GLN A . n A 1 44 ARG 44 39 39 ARG ARG A . n A 1 45 VAL 45 40 40 VAL VAL A . n A 1 46 ALA 46 41 41 ALA ALA A . n A 1 47 PHE 47 42 42 PHE PHE A . n A 1 48 SER 48 43 43 SER SER A . n A 1 49 VAL 49 44 44 VAL VAL A . n A 1 50 GLN 50 45 45 GLN GLN A . n A 1 51 LYS 51 46 46 LYS LYS A . n A 1 52 GLU 52 47 47 GLU GLU A . n A 1 53 VAL 53 48 48 VAL VAL A . n A 1 54 GLU 54 49 49 GLU GLU A . n A 1 55 LYS 55 50 50 LYS LYS A . n A 1 56 ASN 56 51 51 ASN ASN A . n A 1 57 LEU 57 52 52 LEU LEU A . n A 1 58 LYS 58 53 53 LYS LYS A . n A 1 59 SER 59 54 54 SER SER A . n A 1 60 TYR 60 55 55 TYR TYR A . n A 1 61 LEU 61 56 56 LEU LEU A . n A 1 62 ASP 62 57 57 ASP ASP A . n A 1 63 ASP 63 58 58 ASP ASP A . n A 1 64 PHE 64 59 59 PHE PHE A . n A 1 65 HIS 65 60 60 HIS HIS A . n A 1 66 VAL 66 61 61 VAL VAL A . n A 1 67 GLU 67 62 62 GLU GLU A . n A 1 68 SER 68 63 63 SER SER A . n A 1 69 ILE 69 64 64 ILE ILE A . n A 1 70 ASP 70 65 65 ASP ASP A . n A 1 71 THR 71 66 66 THR THR A . n A 1 72 ALA 72 67 67 ALA ALA A . n A 1 73 ARG 73 68 68 ARG ARG A . n A 1 74 ILE 74 69 69 ILE ILE A . n A 1 75 ILE 75 70 70 ILE ILE A . n A 1 76 PHE 76 71 71 PHE PHE A . n A 1 77 ASN 77 72 72 ASN ASN A . n A 1 78 GLN 78 73 73 GLN GLN A . n A 1 79 VAL 79 74 74 VAL VAL A . n A 1 80 MET 80 75 75 MET MET A . n A 1 81 GLU 81 76 76 GLU GLU A . n A 1 82 LYS 82 77 77 LYS LYS A . n A 1 83 GLU 83 78 78 GLU GLU A . n A 1 84 PHE 84 79 79 PHE PHE A . n A 1 85 GLU 85 80 80 GLU GLU A . n A 1 86 ASP 86 81 81 ASP ASP A . n A 1 87 GLY 87 82 82 GLY GLY A . n A 1 88 ILE 88 83 83 ILE ILE A . n A 1 89 ILE 89 84 84 ILE ILE A . n A 1 90 ASN 90 85 85 ASN ASN A . n A 1 91 TRP 91 86 86 TRP TRP A . n A 1 92 GLY 92 87 87 GLY GLY A . n A 1 93 ARG 93 88 88 ARG ARG A . n A 1 94 ILE 94 89 89 ILE ILE A . n A 1 95 VAL 95 90 90 VAL VAL A . n A 1 96 THR 96 91 91 THR THR A . n A 1 97 ILE 97 92 92 ILE ILE A . n A 1 98 PHE 98 93 93 PHE PHE A . n A 1 99 ALA 99 94 94 ALA ALA A . n A 1 100 PHE 100 95 95 PHE PHE A . n A 1 101 GLY 101 96 96 GLY GLY A . n A 1 102 GLY 102 97 97 GLY GLY A . n A 1 103 VAL 103 98 98 VAL VAL A . n A 1 104 LEU 104 99 99 LEU LEU A . n A 1 105 LEU 105 100 100 LEU LEU A . n A 1 106 LYS 106 101 101 LYS LYS A . n A 1 107 LYS 107 102 102 LYS LYS A . n A 1 108 LEU 108 103 103 LEU LEU A . n A 1 109 LYS 109 104 104 LYS LYS A . n A 1 110 GLN 110 105 105 GLN GLN A . n A 1 111 GLU 111 106 106 GLU GLU A . n A 1 112 GLN 112 107 107 GLN GLN A . n A 1 113 ILE 113 108 108 ILE ILE A . n A 1 114 ALA 114 109 109 ALA ALA A . n A 1 115 LEU 115 110 110 LEU LEU A . n A 1 116 ASP 116 111 111 ASP ASP A . n A 1 117 VAL 117 112 112 VAL VAL A . n A 1 118 SER 118 113 113 SER SER A . n A 1 119 ALA 119 114 114 ALA ALA A . n A 1 120 TYR 120 115 115 TYR TYR A . n A 1 121 LYS 121 116 116 LYS LYS A . n A 1 122 GLN 122 117 117 GLN GLN A . n A 1 123 VAL 123 118 118 VAL VAL A . n A 1 124 SER 124 119 119 SER SER A . n A 1 125 SER 125 120 120 SER SER A . n A 1 126 PHE 126 121 121 PHE PHE A . n A 1 127 VAL 127 122 122 VAL VAL A . n A 1 128 ALA 128 123 123 ALA ALA A . n A 1 129 GLU 129 124 124 GLU GLU A . n A 1 130 PHE 130 125 125 PHE PHE A . n A 1 131 ILE 131 126 126 ILE ILE A . n A 1 132 MET 132 127 127 MET MET A . n A 1 133 ASN 133 128 128 ASN ASN A . n A 1 134 ASN 134 129 129 ASN ASN A . n A 1 135 THR 135 130 130 THR THR A . n A 1 136 GLY 136 131 131 GLY GLY A . n A 1 137 GLU 137 132 132 GLU GLU A . n A 1 138 TRP 138 133 133 TRP TRP A . n A 1 139 ILE 139 134 134 ILE ILE A . n A 1 140 ARG 140 135 135 ARG ARG A . n A 1 141 GLN 141 136 136 GLN GLN A . n A 1 142 ASN 142 137 137 ASN ASN A . n A 1 143 GLY 143 138 138 GLY GLY A . n A 1 144 GLY 144 139 139 GLY GLY A . n A 1 145 TRP 145 140 140 TRP TRP A . n A 1 146 GLU 146 141 141 GLU GLU A . n A 1 147 ASP 147 142 142 ASP ASP A . n A 1 148 GLY 148 143 143 GLY GLY A . n A 1 149 PHE 149 144 144 PHE PHE A . n A 1 150 ILE 150 145 145 ILE ILE A . n A 1 151 LYS 151 146 146 LYS LYS A . n A 1 152 LYS 152 147 147 LYS LYS A . n A 1 153 PHE 153 148 148 PHE PHE A . n A 1 154 GLU 154 149 149 GLU GLU A . n A 1 155 PRO 155 150 ? ? ? A . n A 1 156 LYS 156 151 ? ? ? A . n A 1 157 SER 157 152 ? ? ? A . n B 2 1 LEU 1 126 ? ? ? B . n B 2 2 GLN 2 127 ? ? ? B . n B 2 3 HIS 3 128 ? ? ? B . n B 2 4 ARG 4 129 129 ARG ARG B . n B 2 5 ALA 5 130 130 ALA ALA B . n B 2 6 GLU 6 131 131 GLU GLU B . n B 2 7 VAL 7 132 132 VAL VAL B . n B 2 8 GLN 8 133 133 GLN GLN B . n B 2 9 ILE 9 134 134 ILE ILE B . n B 2 10 ALA 10 135 135 ALA ALA B . n B 2 11 ARG 11 136 136 ARG ARG B . n B 2 12 LYS 12 137 137 LYS LYS B . n B 2 13 LEU 13 138 138 LEU LEU B . n B 2 14 GLN 14 139 139 GLN GLN B . n B 2 15 CYS 15 140 140 CYS CYS B . n B 2 16 ILE 16 141 141 ILE ILE B . n B 2 17 ALA 17 142 142 ALA ALA B . n B 2 18 ASP 18 143 143 ASP ASP B . n B 2 19 GLN 19 144 144 GLN GLN B . n B 2 20 PHE 20 145 145 PHE PHE B . n B 2 21 HIS 21 146 146 HIS HIS B . n B 2 22 ARG 22 147 147 ARG ARG B . n B 2 23 LEU 23 148 148 LEU LEU B . n B 2 24 HIS 24 149 149 HIS HIS B . n B 2 25 THR 25 150 150 THR THR B . n B 2 26 GLN 26 151 ? ? ? B . n B 2 27 GLN 27 152 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 1150 1150 CL CL A . D 3 CL 1 1151 1151 CL CL A . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . F 4 HOH 1 2001 2001 HOH HOH B . F 4 HOH 2 2002 2002 HOH HOH B . F 4 HOH 3 2003 2003 HOH HOH B . F 4 HOH 4 2004 2004 HOH HOH B . F 4 HOH 5 2005 2005 HOH HOH B . F 4 HOH 6 2006 2006 HOH HOH B . F 4 HOH 7 2007 2007 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2260 ? 1 MORE -19 ? 1 'SSA (A^2)' 10050 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CL _pdbx_struct_special_symmetry.auth_seq_id 1151 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id CL _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-04 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 45.9630 7.3640 23.4600 -0.1643 -0.1223 -0.2072 -0.0281 -0.0139 -0.0035 2.2872 3.0048 3.0509 0.1288 -0.7780 0.2717 -0.0158 0.0642 0.0034 -0.1223 -0.0445 -0.0196 0.0204 -0.0089 0.0603 'X-RAY DIFFRACTION' 2 ? refined 55.6860 17.0700 28.0800 -0.0858 -0.0333 -0.1492 -0.1062 0.0064 -0.0410 17.5825 30.2732 4.0118 -19.2913 2.5795 -2.3070 -0.1634 -0.0891 0.9605 0.2239 0.1691 -1.4402 -0.4375 0.4482 -0.0056 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A -1 ? ? A 149 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 4 ? ? B 25 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2VOG _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, PRO 104 TO LYS ENGINEERED RESIDUE IN CHAIN A, CYS 113 TO SER ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 35 ? CG ? A ARG 40 CG 2 1 Y 1 A ARG 35 ? CD ? A ARG 40 CD 3 1 Y 1 A ARG 35 ? NE ? A ARG 40 NE 4 1 Y 1 A ARG 35 ? CZ ? A ARG 40 CZ 5 1 Y 1 A ARG 35 ? NH1 ? A ARG 40 NH1 6 1 Y 1 A ARG 35 ? NH2 ? A ARG 40 NH2 7 1 Y 1 A LYS 53 ? CG ? A LYS 58 CG 8 1 Y 1 A LYS 53 ? CD ? A LYS 58 CD 9 1 Y 1 A LYS 53 ? CE ? A LYS 58 CE 10 1 Y 1 A LYS 53 ? NZ ? A LYS 58 NZ 11 1 Y 1 A LYS 146 ? CG ? A LYS 151 CG 12 1 Y 1 A LYS 146 ? CD ? A LYS 151 CD 13 1 Y 1 A LYS 146 ? CE ? A LYS 151 CE 14 1 Y 1 A LYS 146 ? NZ ? A LYS 151 NZ 15 1 Y 1 B ARG 129 ? CG ? B ARG 4 CG 16 1 Y 1 B ARG 129 ? CD ? B ARG 4 CD 17 1 Y 1 B ARG 129 ? NE ? B ARG 4 NE 18 1 Y 1 B ARG 129 ? CZ ? B ARG 4 CZ 19 1 Y 1 B ARG 129 ? NH1 ? B ARG 4 NH1 20 1 Y 1 B ARG 129 ? NH2 ? B ARG 4 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -4 ? A GLY 1 2 1 Y 1 A PRO -3 ? A PRO 2 3 1 Y 1 A LEU -2 ? A LEU 3 4 1 Y 1 A ALA 25 ? A ALA 30 5 1 Y 1 A PHE 26 ? A PHE 31 6 1 Y 1 A GLU 27 ? A GLU 32 7 1 Y 1 A SER 28 ? A SER 33 8 1 Y 1 A ALA 29 ? A ALA 34 9 1 Y 1 A PRO 30 ? A PRO 35 10 1 Y 1 A PRO 150 ? A PRO 155 11 1 Y 1 A LYS 151 ? A LYS 156 12 1 Y 1 A SER 152 ? A SER 157 13 1 Y 1 B LEU 126 ? B LEU 1 14 1 Y 1 B GLN 127 ? B GLN 2 15 1 Y 1 B HIS 128 ? B HIS 3 16 1 Y 1 B GLN 151 ? B GLN 26 17 1 Y 1 B GLN 152 ? B GLN 27 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH #