HEADER IMMUNE SYSTEM 19-FEB-08 2VOL OBSLTE 22-MAY-13 2VOL 3ZO0 TITLE MURINE TRIM21 IN COMPLEX WITH MURINE IGG FC COMPND MOL_ID: 1; COMPND 2 MOLECULE: MURINE IGG FC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 52 KDA RO PROTEIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 291-468; COMPND 9 SYNONYM: TRIM21, SJOEGREN SYNDROME TYPE A ANTIGEN, SS-A, COMPND 10 RO(SS-A), 52 KDA RIBONUCLEOPROTEIN AUTOANTIGEN RO/SS-A, COMPND 11 TRIPARTITE MOTIF-CONTAINING PROTEIN 21; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090 KEYWDS FC, ZINC, B30.2, RO.52, NUCLEUS, PRYSPRY, CYTOPLASM, MOUSE KEYWDS 2 IGG, ZINC-FINGER, DNA-BINDING, RNA-BINDING, TRIPARTITE KEYWDS 3 MOTIF (TRIM) PROTEIN, SPRY SYSTEMIC LUPUS ERYTHEMATOSUS, KEYWDS 4 IMMUNE SYSTEM, COILED COIL, POLYMORPHISM, METAL-BINDING, KEYWDS 5 RIBONUCLEOPROTEIN, SYSTEMIC LUPUS ERYTHEMATOSUS EXPDTA X-RAY DIFFRACTION AUTHOR A.H.KEEBLE,Z.KHAN,A.FORSTER,L.C.JAMES REVDAT 5 22-MAY-13 2VOL 1 OBSLTE REVDAT 4 24-FEB-09 2VOL 1 VERSN REVDAT 3 06-MAY-08 2VOL 1 JRNL REMARK MASTER REVDAT 2 15-APR-08 2VOL 1 COMPND REVDAT 1 08-APR-08 2VOL 0 JRNL AUTH A.H.KEEBLE,Z.KHAN,A.FORSTER,L.C.JAMES JRNL TITL TRIM21 IS AN IGG RECEPTOR THAT IS STRUCTURALLY, JRNL TITL 2 THERMODYNAMICALLY, AND KINETICALLY CONSERVED. JRNL REF PROC.NAT.ACAD.SCI.USA V. 105 6045 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18420815 JRNL DOI 10.1073/PNAS.0800159105 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0022 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 33674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 8.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 93.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 365 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.22500 REMARK 3 B22 (A**2) : -1.84600 REMARK 3 B33 (A**2) : -1.37900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3292 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3120 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4491 ; 2.304 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7281 ; 3.145 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 8.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;37.122 ;24.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;19.743 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.163 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2464 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 581 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1532 ; 0.276 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3043 ; 0.241 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2227 ; 0.327 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 17 ; 0.447 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 192 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.267 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 81 ; 0.311 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1987 ; 1.585 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3170 ; 2.532 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1466 ; 3.566 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1321 ; 5.118 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VOL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-08. REMARK 100 THE PDBE ID CODE IS EBI-35389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.95 REMARK 200 RESOLUTION RANGE LOW (A) : 93.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 200 DATA REDUNDANCY : 3 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.76500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.16500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.76500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.16500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.47500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.76500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.16500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.47500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.76500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.16500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 45.53000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -62.47500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2118 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 443 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD PRO A 247 - O HOH A 2069 2.16 REMARK 500 O VAL A 250 - CD2 HIS A 310 2.12 REMARK 500 CD2 LEU A 314 - O HOH A 2077 2.04 REMARK 500 O ARG A 342 - CD2 PHE A 373 2.16 REMARK 500 O2 MAN A 1449 - O HOH A 2121 1.93 REMARK 500 O HOH B 2047 - O HOH A 2096 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 375 CG GLU A 375 CD 0.109 REMARK 500 GLN A 395 CG GLN A 395 CD 0.146 REMARK 500 VAL B 80 CB VAL B 80 CG1 -0.132 REMARK 500 TRP B 100 N TRP B 100 CA 0.129 REMARK 500 PHE B 166 CE1 PHE B 166 CZ 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 261 CA - CB - SG ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP A 376 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 VAL A 406 CA - CB - CG1 ANGL. DEV. = 14.1 DEGREES REMARK 500 VAL A 406 CG1 - CB - CG2 ANGL. DEV. = -9.9 DEGREES REMARK 500 VAL A 406 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 LEU A 428 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 291 93.97 -40.20 REMARK 500 ARG A 292 49.36 18.43 REMARK 500 GLU A 293 152.26 -46.36 REMARK 500 ASN A 297 33.83 -140.07 REMARK 500 SER A 298 70.90 35.05 REMARK 500 ALA A 327 0.88 -69.46 REMARK 500 GLN A 357 -17.47 -40.54 REMARK 500 ALA A 388 156.45 -46.80 REMARK 500 SER A 415 -12.11 -47.07 REMARK 500 ASN A 421 110.99 74.24 REMARK 500 HIS A 435 -0.60 76.64 REMARK 500 ASN B 39 57.25 70.27 REMARK 500 GLN B 72 1.78 81.90 REMARK 500 ASP B 146 58.23 -102.68 REMARK 500 TYR B 152 142.54 -170.05 REMARK 500 PRO B 185 119.23 -31.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 296 ASN A 297 144.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 250 22.7 L L OUTSIDE RANGE REMARK 500 PHE A 275 24.4 L L OUTSIDE RANGE REMARK 500 PHE A 296 19.0 L L OUTSIDE RANGE REMARK 500 VAL A 406 46.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FUC A 1451 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A1444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A1445 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A1446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A1447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A1448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL A1450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC A1451 DBREF 2VOL A 237 443 PDB 2VOL 2VOL 237 443 DBREF 2VOL B 7 8 PDB 2VOL 2VOL 7 8 DBREF 2VOL B 9 186 UNP Q62191 RO52_MOUSE 291 468 SEQADV 2VOL LYS B 107 UNP Q62191 ASP 389 CONFLICT SEQRES 1 A 207 VAL SER SER VAL PHE ILE PHE PRO PRO LYS PRO LYS ASP SEQRES 2 A 207 VAL LEU THR ILE THR LEU THR PRO LYS VAL THR CYS VAL SEQRES 3 A 207 VAL VAL ASP ILE SER LYS ASP ASP PRO GLU VAL GLN PHE SEQRES 4 A 207 SER TRP PHE VAL ASP ASP VAL GLU VAL HIS THR ALA GLN SEQRES 5 A 207 THR LYS PRO ARG GLU GLU GLN PHE ASN SER THR PHE ARG SEQRES 6 A 207 SER VAL SER GLU LEU PRO ILE MET HIS GLN ASP TRP LEU SEQRES 7 A 207 ASN GLY LYS GLU PHE LYS CYS ARG VAL ASN SER ALA ALA SEQRES 8 A 207 PHE PRO ALA PRO ILE GLU LYS THR ILE SER LYS THR LYS SEQRES 9 A 207 GLY ARG PRO LYS ALA PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 A 207 PRO LYS GLU GLN MET ALA LYS ASP LYS VAL SER LEU THR SEQRES 11 A 207 CYS MET ILE THR ASP PHE PHE PRO GLU ASP ILE THR VAL SEQRES 12 A 207 GLU TRP GLU SER ASN GLY GLN PRO ALA GLU ASN TYR LYS SEQRES 13 A 207 ASN THR GLN PRO ILE MET ASP THR ASP GLY SER TYR PHE SEQRES 14 A 207 VAL TYR SER LYS LEU ASN VAL GLN LYS SER ASN TRP GLU SEQRES 15 A 207 ALA GLY ASN THR PHE THR CYS SER VAL LEU HIS GLU GLY SEQRES 16 A 207 LEU HIS ASN HIS HIS THR GLU LYS SER LEU SER HIS SEQRES 1 B 180 HIS MET VAL HIS ILE THR LEU ASP ARG ASN THR ALA ASN SEQRES 2 B 180 SER TRP LEU ILE ILE SER LYS ASP ARG ARG GLN VAL ARG SEQRES 3 B 180 MET GLY ASP THR HIS GLN ASN VAL SER ASP ASN LYS GLU SEQRES 4 B 180 ARG PHE SER ASN TYR PRO MET VAL LEU GLY ALA GLN ARG SEQRES 5 B 180 PHE SER SER GLY LYS MET TYR TRP GLU VAL ASP VAL THR SEQRES 6 B 180 GLN LYS GLU ALA TRP ASP LEU GLY VAL CYS ARG ASP SER SEQRES 7 B 180 VAL GLN ARG LYS GLY GLN PHE SER LEU SER PRO GLU ASN SEQRES 8 B 180 GLY PHE TRP THR ILE TRP LEU TRP GLN LYS SER TYR GLU SEQRES 9 B 180 ALA GLY THR SER PRO GLN THR THR LEU HIS ILE GLN VAL SEQRES 10 B 180 PRO PRO CYS GLN ILE GLY ILE PHE VAL ASP TYR GLU ALA SEQRES 11 B 180 GLY VAL VAL SER PHE TYR ASN ILE THR ASP HIS GLY SER SEQRES 12 B 180 LEU ILE TYR THR PHE SER GLU CYS VAL PHE ALA GLY PRO SEQRES 13 B 180 LEU ARG PRO PHE PHE ASN VAL GLY PHE ASN TYR SER GLY SEQRES 14 B 180 GLY ASN ALA ALA PRO LEU LYS LEU CYS PRO LEU HET NAG A1444 14 HET NAG A1445 14 HET MAN A1446 11 HET MAN A1447 11 HET NAG A1448 14 HET MAN A1449 11 HET GAL A1450 11 HET FUC A1451 10 HETNAM GAL BETA-D-GALACTOSE HETNAM MAN ALPHA-D-MANNOSE HETNAM FUC ALPHA-L-FUCOSE HETNAM NAG N-ACETYL-D-GLUCOSAMINE FORMUL 3 GAL C6 H12 O6 FORMUL 4 MAN 3(C6 H12 O6) FORMUL 5 FUC C6 H12 O5 FORMUL 6 NAG 3(C8 H15 N O6) FORMUL 7 HOH *241(H2 O1) HELIX 1 1 LYS A 246 THR A 252 1 7 HELIX 2 2 MET A 309 ASN A 315 1 7 HELIX 3 3 LYS A 355 ALA A 359 5 5 HELIX 4 4 LYS A 414 GLU A 418 1 5 HELIX 5 5 LEU A 432 ASN A 434 5 3 HELIX 6 6 ASP B 14 ALA B 18 5 5 SHEET 1 AA 4 SER A 239 PHE A 243 0 SHEET 2 AA 4 LYS A 258 ILE A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AA 4 THR A 299 PRO A 307 -1 O PHE A 300 N ILE A 266 SHEET 4 AA 4 GLN A 288 LYS A 290 -1 O GLN A 288 N GLU A 305 SHEET 1 AB 4 SER A 239 PHE A 243 0 SHEET 2 AB 4 LYS A 258 ILE A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AB 4 THR A 299 PRO A 307 -1 O PHE A 300 N ILE A 266 SHEET 4 AB 4 GLU A 294 GLN A 295 -1 O GLN A 295 N THR A 299 SHEET 1 AC 4 VAL A 282 VAL A 284 0 SHEET 2 AC 4 GLN A 274 VAL A 279 -1 O TRP A 277 N VAL A 284 SHEET 3 AC 4 PHE A 319 ASN A 324 -1 O LYS A 320 N PHE A 278 SHEET 4 AC 4 ILE A 332 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 AD 4 GLN A 347 LEU A 351 0 SHEET 2 AD 4 LYS A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AD 4 TYR A 404 GLN A 413 -1 O TYR A 404 N PHE A 372 SHEET 4 AD 4 TYR A 391 ASN A 393 -1 O LYS A 392 N LYS A 409 SHEET 1 AE 4 GLN A 347 LEU A 351 0 SHEET 2 AE 4 LYS A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AE 4 TYR A 404 GLN A 413 -1 O TYR A 404 N PHE A 372 SHEET 4 AE 4 ILE A 397 MET A 398 -1 O ILE A 397 N PHE A 405 SHEET 1 AF 4 GLN A 386 PRO A 387 0 SHEET 2 AF 4 THR A 378 SER A 383 -1 O SER A 383 N GLN A 386 SHEET 3 AF 4 THR A 422 LEU A 428 -1 O THR A 424 N GLU A 382 SHEET 4 AF 4 HIS A 436 SER A 442 -1 O THR A 437 N VAL A 427 SHEET 1 BA 7 LEU B 22 ILE B 24 0 SHEET 2 BA 7 GLN B 30 MET B 33 -1 O ARG B 32 N ILE B 23 SHEET 3 BA 7 LEU B 181 LEU B 183 -1 O LEU B 181 N VAL B 31 SHEET 4 BA 7 LYS B 63 ASP B 69 -1 O ASP B 69 N LYS B 182 SHEET 5 BA 7 GLN B 127 ASP B 133 -1 O ILE B 128 N VAL B 68 SHEET 6 BA 7 VAL B 138 ASN B 143 -1 O VAL B 138 N ASP B 133 SHEET 7 BA 7 SER B 149 PHE B 154 -1 O SER B 149 N ASN B 143 SHEET 1 BB 6 MET B 52 LEU B 54 0 SHEET 2 BB 6 LEU B 163 ASN B 168 -1 O PHE B 167 N VAL B 53 SHEET 3 BB 6 TRP B 76 ARG B 82 -1 O ASP B 77 N ASN B 168 SHEET 4 BB 6 PHE B 99 TRP B 105 -1 O TRP B 100 N VAL B 80 SHEET 5 BB 6 SER B 108 ALA B 111 -1 O SER B 108 N TRP B 105 SHEET 6 BB 6 THR B 117 THR B 118 -1 O THR B 117 N ALA B 111 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.04 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.02 LINK ND2 ASN A 297 C1 NAG A1444 1555 1555 1.44 LINK O4 NAG A1444 C1 NAG A1445 1555 1555 1.46 LINK O4 NAG A1445 C1 MAN A1446 1555 1555 1.41 LINK O6 MAN A1446 C1 MAN A1447 1555 1555 1.43 LINK O3 MAN A1446 C1 MAN A1449 1555 1555 1.45 LINK O2 MAN A1447 C1 NAG A1448 1555 1555 1.44 LINK O4 NAG A1448 C1 GAL A1450 1555 1555 1.45 CISPEP 1 PHE A 373 PRO A 374 0 -5.60 CISPEP 2 SER B 114 PRO B 115 0 -1.41 SITE 1 AC1 6 ASP A 265 GLN A 295 ASN A 297 NAG A1445 SITE 2 AC1 6 FUC A1451 HOH A2107 SITE 1 AC2 11 PHE A 241 VAL A 264 ARG A 301 NAG A1444 SITE 2 AC2 11 MAN A1446 MAN A1447 MAN A1449 FUC A1451 SITE 3 AC2 11 HOH A2107 HOH A2108 HOH A2109 SITE 1 AC3 7 PHE A 243 NAG A1445 MAN A1447 MAN A1449 SITE 2 AC3 7 HOH A2110 HOH A2112 HOH A2118 SITE 1 AC4 6 PHE A 243 NAG A1445 MAN A1446 NAG A1448 SITE 2 AC4 6 FUC A1451 HOH A2113 SITE 1 AC5 6 PHE A 243 THR A 260 MAN A1447 GAL A1450 SITE 2 AC5 6 HOH A2114 HOH A2115 SITE 1 AC6 8 PHE A 241 NAG A1445 MAN A1446 FUC A1451 SITE 2 AC6 8 HOH A2117 HOH A2118 HOH A2119 HOH A2121 SITE 1 AC7 10 PHE A 243 PRO A 244 PRO A 245 LYS A 246 SITE 2 AC7 10 LYS A 258 THR A 260 NAG A1448 HOH A2007 SITE 3 AC7 10 HOH A2008 HOH A2115 SITE 1 AC8 8 NAG A1444 NAG A1445 MAN A1447 MAN A1449 SITE 2 AC8 8 HOH A2116 HOH A2122 HOH A2123 HOH A2124 CRYST1 45.530 186.330 124.950 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008003 0.00000