HEADER LIGASE 19-FEB-08 2VOR TITLE CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS FOLYLPOLYGLUTAMATE TITLE 2 SYNTHASE COMPLEXED WITH ADP AND AMPPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOLYLPOLYGLUTAMATE SYNTHASE PROTEIN FOLC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FOLYLPOLYGLUTAMATE SYNTHASE, FOLYLPOLY-GAMMA-GLUTAMATE COMPND 5 SYNTHETASE, FPGS, FOLYLPOLYGLUTAMATE SYNTHASE; COMPND 6 EC: 6.3.2.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET42A-RTEV; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: GST-HIS6-MTBFPGS KEYWDS LIGASE, PEPTIDOGLYCAN SYNTHESIS, CELL DIVISION, FOLATE METABOLISM, KEYWDS 2 CELL WALL BIOGENESIS/DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR P.G.YOUNG,E.N.BAKER,P.METCALF,C.A.SMITH REVDAT 4 01-MAY-24 2VOR 1 LINK REVDAT 3 13-JUL-11 2VOR 1 VERSN REVDAT 2 24-FEB-09 2VOR 1 VERSN REVDAT 1 01-JUL-08 2VOR 0 JRNL AUTH P.G.YOUNG,C.A.SMITH,P.METCALF,E.N.BAKER JRNL TITL STRUCTURES OF MYCOBACTERIUM TUBERCULOSISFOLYLPOLYGLUTAMATE JRNL TITL 2 SYNTHASE COMPLEXED WITH ADP AND AMPPCP. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 745 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 18566510 JRNL DOI 10.1107/S0907444908012262 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1448 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.293 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.201 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3309 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4517 ; 2.057 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 6.662 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;36.322 ;23.594 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 480 ;14.469 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.002 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2474 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2194 ; 0.975 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3504 ; 1.716 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1115 ; 3.085 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1013 ; 4.781 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 39 REMARK 3 RESIDUE RANGE : A 49 A 65 REMARK 3 RESIDUE RANGE : A 118 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0056 -53.1894 19.6439 REMARK 3 T TENSOR REMARK 3 T11: -0.0494 T22: 0.0594 REMARK 3 T33: -0.1393 T12: -0.0328 REMARK 3 T13: 0.0274 T23: -0.1292 REMARK 3 L TENSOR REMARK 3 L11: 0.6979 L22: 3.2735 REMARK 3 L33: 1.0083 L12: 0.1000 REMARK 3 L13: 0.4829 L23: -0.2679 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: 0.2987 S13: -0.1558 REMARK 3 S21: -0.1242 S22: -0.1844 S23: 0.1171 REMARK 3 S31: 0.2749 S32: -0.0249 S33: 0.0947 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6429 -29.7305 26.3178 REMARK 3 T TENSOR REMARK 3 T11: -0.2257 T22: 0.0808 REMARK 3 T33: -0.0946 T12: -0.0665 REMARK 3 T13: 0.0807 T23: -0.1348 REMARK 3 L TENSOR REMARK 3 L11: 1.0838 L22: 2.5380 REMARK 3 L33: 1.3056 L12: 0.1782 REMARK 3 L13: 0.3508 L23: 0.2913 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: 0.0213 S13: 0.0607 REMARK 3 S21: 0.1788 S22: -0.2468 S23: 0.5318 REMARK 3 S31: 0.0568 S32: -0.3571 S33: 0.1791 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 485 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6600 -23.2831 0.4484 REMARK 3 T TENSOR REMARK 3 T11: -0.0948 T22: 0.0974 REMARK 3 T33: -0.2079 T12: 0.0810 REMARK 3 T13: -0.0681 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.5705 L22: 1.8544 REMARK 3 L33: 2.3903 L12: -0.0480 REMARK 3 L13: 0.0140 L23: -0.6270 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: 0.3253 S13: 0.1423 REMARK 3 S21: -0.4222 S22: -0.1736 S23: 0.0805 REMARK 3 S31: -0.0957 S32: -0.1106 S33: 0.0997 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1290035387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : HORIZONTAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21320 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 56.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MTBFPGS ADP STRUCTURE USED AS A MODEL FOR REMARK 200 MOLECULAR REPLACEMENT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MTBFPGS PRE-INCUBATED WITH 1.5 MM ADP REMARK 280 AND 2 MM MGCL2 WERE GROWN BY THE BATCH METHOD UNDER PARAFFIN OIL REMARK 280 IN 2 PLUS 2 UL DROPS OF PROTEIN AND 14%(W/V) PEG 8000, 30%(V/V) REMARK 280 MPD, 10 MM COCL2, 50 MM SODIUM ACETATE PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.19800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.19800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.19800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.19800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.19800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.19800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 56.19800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 56.19800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 56.19800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 56.19800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 56.19800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 56.19800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 56.19800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 56.19800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 56.19800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 56.19800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 56.19800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 56.19800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CO CO A1491 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 ASN A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 PRO A 11 REMARK 465 ASP A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 GLY A 18 REMARK 465 VAL A 19 REMARK 465 VAL A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 TRP A 40 REMARK 465 PRO A 41 REMARK 465 GLU A 42 REMARK 465 THR A 43 REMARK 465 ARG A 44 REMARK 465 ILE A 45 REMARK 465 ASP A 46 REMARK 465 ALA A 144 REMARK 465 GLY A 145 REMARK 465 LYS A 146 REMARK 465 GLY A 147 REMARK 465 GLY A 148 REMARK 465 ASP A 227 REMARK 465 GLY A 228 REMARK 465 GLY A 318 REMARK 465 ALA A 319 REMARK 465 GLN A 320 REMARK 465 ARG A 321 REMARK 465 ALA A 459 REMARK 465 GLY A 460 REMARK 465 ASP A 461 REMARK 465 ALA A 462 REMARK 465 PHE A 463 REMARK 465 SER A 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 115 CE NZ REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 ILE A 211 CG1 CG2 CD1 REMARK 470 ARG A 224 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 ASP A 255 CG OD1 OD2 REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 375 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 425 CG CD OE1 OE2 REMARK 470 GLU A 436 CG CD OE1 OE2 REMARK 470 ARG A 465 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 330 CA ALA A 330 CB 0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 187 42.55 -81.48 REMARK 500 ASP A 202 -77.02 -137.25 REMARK 500 ASP A 255 69.88 38.61 REMARK 500 SER A 263 -50.95 -122.66 REMARK 500 PRO A 294 46.00 -77.64 REMARK 500 LEU A 341 57.14 36.44 REMARK 500 ALA A 347 73.63 45.22 REMARK 500 ASP A 457 32.11 -92.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1492 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 78 OG1 REMARK 620 2 SER A 100 O 89.9 REMARK 620 3 GLU A 176 OE2 89.2 78.3 REMARK 620 4 ACP A1490 O1G 91.5 106.9 174.8 REMARK 620 5 ACP A1490 O2B 93.0 175.3 98.0 76.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1493 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 203 NE2 REMARK 620 2 ASP A 205 OD1 87.1 REMARK 620 3 HOH A2117 O 99.5 156.0 REMARK 620 4 HOH A2118 O 94.2 82.4 119.7 REMARK 620 5 HOH A2119 O 68.4 85.7 75.6 159.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1491 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 326 OD2 REMARK 620 2 ASP A 326 OD2 92.9 REMARK 620 3 ASP A 326 OD2 92.9 92.9 REMARK 620 4 HOH A2116 O 81.5 89.6 174.0 REMARK 620 5 HOH A2116 O 174.0 81.4 89.6 96.2 REMARK 620 6 HOH A2116 O 89.6 173.9 81.4 96.3 96.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1494 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 370 NE2 REMARK 620 2 ASP A 455 OD1 89.5 REMARK 620 3 ASP A 457 OD1 90.6 79.8 REMARK 620 4 HOH A2120 O 89.8 95.1 174.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A1490 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1495 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1496 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VOS RELATED DB: PDB REMARK 900 MYCOBACTERIUM TUBERCULOSIS FOLYLPOLYGLUTAMATE SYNTHASE COMPLEXED REMARK 900 WITH ADP DBREF 2VOR A 3 489 UNP O53174 O53174_MYCTU 1 487 SEQRES 1 A 487 MET ASN SER THR ASN SER GLY PRO PRO ASP SER GLY SER SEQRES 2 A 487 ALA THR GLY VAL VAL PRO THR PRO ASP GLU ILE ALA SER SEQRES 3 A 487 LEU LEU GLN VAL GLU HIS LEU LEU ASP GLN ARG TRP PRO SEQRES 4 A 487 GLU THR ARG ILE ASP PRO SER LEU THR ARG ILE SER ALA SEQRES 5 A 487 LEU MET ASP LEU LEU GLY SER PRO GLN ARG SER TYR PRO SEQRES 6 A 487 SER ILE HIS ILE ALA GLY THR ASN GLY LYS THR SER VAL SEQRES 7 A 487 ALA ARG MET VAL ASP ALA LEU VAL THR ALA LEU HIS ARG SEQRES 8 A 487 ARG THR GLY ARG THR THR SER PRO HIS LEU GLN SER PRO SEQRES 9 A 487 VAL GLU ARG ILE SER ILE ASP GLY LYS PRO ILE SER PRO SEQRES 10 A 487 ALA GLN TYR VAL ALA THR TYR ARG GLU ILE GLU PRO LEU SEQRES 11 A 487 VAL ALA LEU ILE ASP GLN GLN SER GLN ALA SER ALA GLY SEQRES 12 A 487 LYS GLY GLY PRO ALA MET SER LYS PHE GLU VAL LEU THR SEQRES 13 A 487 ALA MET ALA PHE ALA ALA PHE ALA ASP ALA PRO VAL ASP SEQRES 14 A 487 VAL ALA VAL VAL GLU VAL GLY MET GLY GLY ARG TRP ASP SEQRES 15 A 487 ALA THR ASN VAL ILE ASN ALA PRO VAL ALA VAL ILE THR SEQRES 16 A 487 PRO ILE SER ILE ASP HIS VAL ASP TYR LEU GLY ALA ASP SEQRES 17 A 487 ILE ALA GLY ILE ALA GLY GLU LYS ALA GLY ILE ILE THR SEQRES 18 A 487 ARG ALA PRO ASP GLY SER PRO ASP THR VAL ALA VAL ILE SEQRES 19 A 487 GLY ARG GLN VAL PRO LYS VAL MET GLU VAL LEU LEU ALA SEQRES 20 A 487 GLU SER VAL ARG ALA ASP ALA SER VAL ALA ARG GLU ASP SEQRES 21 A 487 SER GLU PHE ALA VAL LEU ARG ARG GLN ILE ALA VAL GLY SEQRES 22 A 487 GLY GLN VAL LEU GLN LEU GLN GLY LEU GLY GLY VAL TYR SEQRES 23 A 487 SER ASP ILE TYR LEU PRO LEU HIS GLY GLU HIS GLN ALA SEQRES 24 A 487 HIS ASN ALA VAL LEU ALA LEU ALA SER VAL GLU ALA PHE SEQRES 25 A 487 PHE GLY ALA GLY ALA GLN ARG GLN LEU ASP GLY ASP ALA SEQRES 26 A 487 VAL ARG ALA GLY PHE ALA ALA VAL THR SER PRO GLY ARG SEQRES 27 A 487 LEU GLU ARG MET ARG SER ALA PRO THR VAL PHE ILE ASP SEQRES 28 A 487 ALA ALA HIS ASN PRO ALA GLY ALA SER ALA LEU ALA GLN SEQRES 29 A 487 THR LEU ALA HIS GLU PHE ASP PHE ARG PHE LEU VAL GLY SEQRES 30 A 487 VAL LEU SER VAL LEU GLY ASP LYS ASP VAL ASP GLY ILE SEQRES 31 A 487 LEU ALA ALA LEU GLU PRO VAL PHE ASP SER VAL VAL VAL SEQRES 32 A 487 THR HIS ASN GLY SER PRO ARG ALA LEU ASP VAL GLU ALA SEQRES 33 A 487 LEU ALA LEU ALA ALA GLY GLU ARG PHE GLY PRO ASP ARG SEQRES 34 A 487 VAL ARG THR ALA GLU ASN LEU ARG ASP ALA ILE ASP VAL SEQRES 35 A 487 ALA THR SER LEU VAL ASP ASP ALA ALA ALA ASP PRO ASP SEQRES 36 A 487 VAL ALA GLY ASP ALA PHE SER ARG THR GLY ILE VAL ILE SEQRES 37 A 487 THR GLY SER VAL VAL THR ALA GLY ALA ALA ARG THR LEU SEQRES 38 A 487 PHE GLY ARG ASP PRO GLN HET ACP A1490 31 HET CO A1491 1 HET CO A1492 1 HET CO A1493 1 HET CO A1494 1 HET GOL A1495 6 HET GOL A1496 6 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM CO COBALT (II) ION HETNAM GOL GLYCEROL HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACP C11 H18 N5 O12 P3 FORMUL 3 CO 4(CO 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *122(H2 O) HELIX 1 1 ASP A 24 ASP A 37 1 14 HELIX 2 2 LEU A 49 GLY A 60 1 12 HELIX 3 3 SER A 61 SER A 65 5 5 HELIX 4 4 GLY A 76 LEU A 91 1 16 HELIX 5 5 SER A 105 GLU A 108 5 4 HELIX 6 6 SER A 118 ALA A 142 1 25 HELIX 7 7 SER A 152 ALA A 168 1 17 HELIX 8 8 ASP A 210 ALA A 219 1 10 HELIX 9 9 GLY A 220 ILE A 222 5 3 HELIX 10 10 VAL A 240 ALA A 254 1 15 HELIX 11 11 GLY A 297 GLY A 316 1 20 HELIX 12 12 ASP A 324 ALA A 334 1 11 HELIX 13 13 ASN A 357 PHE A 372 1 16 HELIX 14 14 ASP A 388 GLU A 397 1 10 HELIX 15 15 ASP A 415 GLY A 428 1 14 HELIX 16 16 ASN A 437 ALA A 454 1 18 HELIX 17 17 SER A 473 PHE A 484 1 12 SHEET 1 AA 8 LYS A 115 PRO A 116 0 SHEET 2 AA 8 ILE A 110 ILE A 112 -1 O ILE A 112 N LYS A 115 SHEET 3 AA 8 THR A 95 THR A 98 -1 O ARG A 97 N SER A 111 SHEET 4 AA 8 VAL A 172 GLU A 176 1 O VAL A 172 N GLY A 96 SHEET 5 AA 8 SER A 68 ALA A 72 1 O ILE A 69 N VAL A 175 SHEET 6 AA 8 VAL A 193 ILE A 196 1 O VAL A 193 N HIS A 70 SHEET 7 AA 8 VAL A 233 ILE A 236 1 O VAL A 233 N ALA A 194 SHEET 8 AA 8 SER A 257 ARG A 260 1 O SER A 257 N ALA A 234 SHEET 1 AB 3 ALA A 266 ALA A 273 0 SHEET 2 AB 3 GLY A 276 GLN A 282 -1 O GLY A 276 N ALA A 273 SHEET 3 AB 3 VAL A 287 LEU A 293 -1 O TYR A 288 N LEU A 281 SHEET 1 AC 6 GLU A 342 ARG A 345 0 SHEET 2 AC 6 THR A 349 ILE A 352 -1 O VAL A 350 N MET A 344 SHEET 3 AC 6 THR A 466 THR A 471 1 O THR A 466 N THR A 349 SHEET 4 AC 6 PHE A 376 LEU A 381 1 O PHE A 376 N GLY A 467 SHEET 5 AC 6 SER A 402 VAL A 405 1 O SER A 402 N GLY A 379 SHEET 6 AC 6 VAL A 432 THR A 434 1 O ARG A 433 N VAL A 405 LINK OG1 THR A 78 CO CO A1492 1555 1555 2.37 LINK O SER A 100 CO CO A1492 1555 1555 2.16 LINK OE2 GLU A 176 CO CO A1492 1555 1555 2.22 LINK NE2 HIS A 203 CO CO A1493 1555 1555 2.27 LINK OD1 ASP A 205 CO CO A1493 1555 1555 2.31 LINK OD2 ASP A 326 CO CO A1491 7555 1555 1.90 LINK OD2 ASP A 326 CO CO A1491 1555 1555 1.90 LINK OD2 ASP A 326 CO CO A1491 10545 1555 1.90 LINK NE2 HIS A 370 CO CO A1494 5555 1555 2.16 LINK OD1 ASP A 455 CO CO A1494 1555 1555 2.29 LINK OD1 ASP A 457 CO CO A1494 1555 1555 2.03 LINK O1G ACP A1490 CO CO A1492 1555 1555 1.96 LINK O2B ACP A1490 CO CO A1492 1555 1555 2.13 LINK CO CO A1491 O HOH A2116 1555 1555 2.05 LINK CO CO A1491 O HOH A2116 1555 10545 2.05 LINK CO CO A1491 O HOH A2116 1555 7555 2.05 LINK CO CO A1493 O HOH A2117 1555 1555 2.35 LINK CO CO A1493 O HOH A2118 1555 1555 1.87 LINK CO CO A1493 O HOH A2119 1555 1555 2.16 LINK CO CO A1494 O HOH A2120 1555 1555 2.22 CISPEP 1 SER A 100 PRO A 101 0 -12.91 CISPEP 2 ALA A 168 PRO A 169 0 -10.82 CISPEP 3 ALA A 347 PRO A 348 0 -3.05 SITE 1 AC1 21 THR A 74 ASN A 75 GLY A 76 LYS A 77 SITE 2 AC1 21 THR A 78 SER A 79 SER A 100 PRO A 101 SITE 3 AC1 21 GLU A 176 HIS A 299 ASN A 303 ARG A 340 SITE 4 AC1 21 ASP A 353 ALA A 354 HIS A 356 GLY A 360 SITE 5 AC1 21 ALA A 363 VAL A 474 CO A1492 HOH A2096 SITE 6 AC1 21 HOH A2114 SITE 1 AC2 2 ASP A 326 HOH A2116 SITE 1 AC3 4 THR A 78 SER A 100 GLU A 176 ACP A1490 SITE 1 AC4 5 HIS A 203 ASP A 205 HOH A2117 HOH A2118 SITE 2 AC4 5 HOH A2119 SITE 1 AC5 4 HIS A 370 ASP A 455 ASP A 457 HOH A2120 SITE 1 AC6 6 THR A 74 SER A 200 ASP A 202 HIS A 203 SITE 2 AC6 6 LYS A 218 HOH A2121 SITE 1 AC7 7 ARG A 82 ARG A 97 GLY A 114 ALA A 334 SITE 2 AC7 7 THR A 336 HOH A2011 HOH A2122 CRYST1 112.396 112.396 112.396 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008897 0.00000