HEADER HYDROLASE 25-FEB-08 2VOY TITLE CRYOEM MODEL OF COPA, THE COPPER TRANSPORTING ATPASE FROM TITLE 2 ARCHAEOGLOBUS FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTENTIAL COPPER-TRANSPORTING ATPASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 72-147; COMPND 5 SYNONYM: COPA DELTA C; COMPND 6 EC: 3.6.3.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 36-77; COMPND 12 SYNONYM: CA2+-ATPASE, SERCA1, COPA DELTA C; COMPND 13 EC: 3.6.3.8; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: RESIDUES 967-988; COMPND 18 SYNONYM: CA2+-ATPASE, SERCA1, COPA DELTA C; COMPND 19 EC: 3.6.3.8; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 22 CHAIN: D; COMPND 23 FRAGMENT: RESIDUES 832-854; COMPND 24 SYNONYM: CA2+-ATPASE, SERCA1, COPA DELTA C; COMPND 25 EC: 3.6.3.8; COMPND 26 MOL_ID: 5; COMPND 27 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 28 CHAIN: E; COMPND 29 FRAGMENT: RESIDUES 86-115; COMPND 30 SYNONYM: CA2+-ATPASE, SERCA1, COPA DELTA C; COMPND 31 EC: 3.6.3.8; COMPND 32 MOL_ID: 6; COMPND 33 MOLECULE: CATION-TRANSPORTING ATPASE, P-TYPE; COMPND 34 CHAIN: F; COMPND 35 FRAGMENT: RESIDUES 214-326; COMPND 36 SYNONYM: PACS, COPA DELTA C; COMPND 37 EC: 3.6.3.4; COMPND 38 ENGINEERED: YES; COMPND 39 MOL_ID: 7; COMPND 40 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 41 CHAIN: G; COMPND 42 FRAGMENT: RESIDUES 243-278; COMPND 43 SYNONYM: CA2+-ATPASE, SERCA1, COPA DELTA C; COMPND 44 EC: 3.6.3.8; COMPND 45 MOL_ID: 8; COMPND 46 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 47 CHAIN: H; COMPND 48 FRAGMENT: RESIDUES 289-336; COMPND 49 SYNONYM: CA2+-ATPASE, SERCA1, COPA DELTA C; COMPND 50 EC: 3.6.3.8; COMPND 51 MOL_ID: 9; COMPND 52 MOLECULE: CATION-TRANSPORTING ATPASE; COMPND 53 CHAIN: I; COMPND 54 SYNONYM: COPA, COPA DELTA C; COMPND 55 EC: 3.6.3.4; COMPND 56 ENGINEERED: YES; COMPND 57 MOL_ID: 10; COMPND 58 MOLECULE: CATION-TRANSPORTING ATPASE; COMPND 59 CHAIN: J; COMPND 60 FRAGMENT: RESIDUES 432-549; COMPND 61 SYNONYM: COPA, COPA DELTA C; COMPND 62 EC: 3.6.3.4; COMPND 63 ENGINEERED: YES; COMPND 64 MOL_ID: 11; COMPND 65 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 66 CHAIN: K; COMPND 67 FRAGMENT: RESIDUES 749-780; COMPND 68 SYNONYM: CA2+-ATPASE, SERCA1, COPA DELTA C; COMPND 69 EC: 3.6.3.8; COMPND 70 MOL_ID: 12; COMPND 71 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 72 CHAIN: L; COMPND 73 FRAGMENT: RESIDUES 789-809; COMPND 74 SYNONYM: CA2+-ATPASE, SERCA1, COPA DELTA C; COMPND 75 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 12 ORGANISM_COMMON: RABBIT; SOURCE 13 ORGANISM_TAXID: 9986; SOURCE 14 TISSUE: SKELETAL MUSCLE (WHITE); SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 17 ORGANISM_COMMON: RABBIT; SOURCE 18 ORGANISM_TAXID: 9986; SOURCE 19 TISSUE: SKELETAL MUSCLE (WHITE); SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 22 ORGANISM_COMMON: RABBIT; SOURCE 23 ORGANISM_TAXID: 9986; SOURCE 24 TISSUE: SKELETAL MUSCLE (WHITE); SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 27 ORGANISM_COMMON: RABBIT; SOURCE 28 ORGANISM_TAXID: 9986; SOURCE 29 TISSUE: SKELETAL MUSCLE (WHITE); SOURCE 30 MOL_ID: 6; SOURCE 31 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 32 ORGANISM_TAXID: 2234; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 35 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 36 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 37 EXPRESSION_SYSTEM_PLASMID: PPR-IBA1; SOURCE 38 MOL_ID: 7; SOURCE 39 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 40 ORGANISM_COMMON: RABBIT; SOURCE 41 ORGANISM_TAXID: 9986; SOURCE 42 TISSUE: SKELETAL MUSCLE (WHITE); SOURCE 43 MOL_ID: 8; SOURCE 44 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 45 ORGANISM_COMMON: RABBIT; SOURCE 46 ORGANISM_TAXID: 9986; SOURCE 47 TISSUE: SKELETAL MUSCLE (WHITE); SOURCE 48 MOL_ID: 9; SOURCE 49 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 50 ORGANISM_TAXID: 2234; SOURCE 51 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 52 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 53 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 54 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 55 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 56 EXPRESSION_SYSTEM_PLASMID: PPR-IBA1; SOURCE 57 MOL_ID: 10; SOURCE 58 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 59 ORGANISM_TAXID: 2234; SOURCE 60 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 61 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 62 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 63 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 64 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 65 EXPRESSION_SYSTEM_PLASMID: PPR-IBA1; SOURCE 66 MOL_ID: 11; SOURCE 67 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 68 ORGANISM_COMMON: RABBIT; SOURCE 69 ORGANISM_TAXID: 9986; SOURCE 70 TISSUE: SKELETAL MUSCLE (WHITE); SOURCE 71 MOL_ID: 12; SOURCE 72 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 73 ORGANISM_COMMON: RABBIT; SOURCE 74 ORGANISM_TAXID: 9986; SOURCE 75 TISSUE: SKELETAL MUSCLE (WHITE) KEYWDS HYDROLASEP-TYPE ATPASE, CRYO-EM, HELICAL RECONSTRUCTION, MEMBRANE KEYWDS 2 PROTEIN, COPPER TRANSPORTER, METAL BINDING DOMAIN, HYDROLASE EXPDTA ELECTRON MICROSCOPY AUTHOR C.-C.WU,W.J.RICE,D.L.STOKES REVDAT 6 04-MAY-22 2VOY 1 LINK REVDAT 5 03-OCT-18 2VOY 1 REMARK REVDAT 4 19-APR-17 2VOY 1 REMARK REVDAT 3 29-MAY-13 2VOY 1 SOURCE REMARK VERSN REVDAT 2 21-APR-10 2VOY 1 REMARK MASTER REVDAT 1 26-MAY-09 2VOY 0 JRNL AUTH C.-C.WU,W.J.RICE,D.L.STOKES JRNL TITL STRUCTURE OF A COPPER PUMP SUGGESTS A REGULATORY ROLE FOR JRNL TITL 2 ITS METAL-BINDING DOMAIN. JRNL REF STRUCTURE V. 16 976 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18547529 JRNL DOI 10.1016/J.STR.2008.02.025 REMARK 2 REMARK 2 RESOLUTION. 18.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CUSTOM REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2B8E REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--MANUAL REFINEMENT PROTOCOL--X-RAY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.000 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 18.00 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: ALL AVERAGING DONE IN FOURIER SPACE. ALL TUBES REMARK 3 AVERAGED HAD IDENTICAL HELICAL SYMMETRY REMARK 4 REMARK 4 2VOY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290035333. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : COPA DELTA C, DELTA N DELTA C REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.50 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : LIQUID ETHANE. SAMPLES FROZEN REMARK 245 IN COLD ROOM REMARK 245 SAMPLE BUFFER : 50 MM MES PH 6.1 25 MM NA2SO4 REMARK 245 25 MM K2SO4 10 MM MGSO4 2 MM 2- REMARK 245 MERCAPTOETHANOL 0.2 MM BCDS REMARK 245 PH : 6.10 REMARK 245 SAMPLE DETAILS : MICROGRAPHS SCANNED AT 14 REMARK 245 MICRON INTERVAL USING ZEISS- SCAI SCANNER REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 100.00 REMARK 245 MICROSCOPE MODEL : FEI/PHILIPS CM200FEG/ST REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 900.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 51300 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : FIELD EMISSION GUN REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASP A 8 N VAL F 280 0.42 REMARK 500 CA LYS A 69 CB PRO F 281 0.47 REMARK 500 CA GLY A 11 CG2 VAL J 487 0.53 REMARK 500 N GLY A 79 N HIS B 38 0.57 REMARK 500 O GLU A 73 CE2 TYR B 36 0.58 REMARK 500 CB LEU B 49 C ALA C 988 0.61 REMARK 500 CD1 LEU B 41 OE1 GLU F 214 0.63 REMARK 500 C GLU A 78 C GLY B 37 0.63 REMARK 500 C LYS A 71 OG SER F 273 0.69 REMARK 500 CZ2 TRP B 50 CA ILE C 983 0.69 REMARK 500 OD1 ASP A 8 CB PRO F 279 0.70 REMARK 500 O GLU A 78 CA GLY B 37 0.72 REMARK 500 CB THR A 13 N GLU J 461 0.73 REMARK 500 CB CYS B 70 CD2 LEU C 975 0.73 REMARK 500 CD GLU A 6 OH TYR B 36 0.73 REMARK 500 CB CYS A 14 O ARG J 458 0.74 REMARK 500 CD2 TRP B 77 CA ALA D 853 0.76 REMARK 500 C LEU B 49 CB ALA C 988 0.80 REMARK 500 O LYS A 71 OG SER F 273 0.80 REMARK 500 CD2 TRP B 77 CB ALA D 853 0.81 REMARK 500 OD1 ASN H 330 CD ARG I 652 0.81 REMARK 500 CB THR A 13 C SER J 460 0.83 REMARK 500 N ILE A 9 CG2 VAL F 280 0.83 REMARK 500 OD2 ASP A 8 N PRO F 279 0.84 REMARK 500 OD2 ASP A 8 CD PRO F 279 0.89 REMARK 500 CB LYS A 69 CA PRO F 281 0.90 REMARK 500 CB CYS A 17 CD ARG J 459 0.92 REMARK 500 N THR A 13 CA SER J 460 0.93 REMARK 500 CB CYS A 17 CG ARG J 459 0.94 REMARK 500 N LYS A 69 CG PRO F 281 0.96 REMARK 500 N ILE H 332 O VAL I 649 0.97 REMARK 500 CD1 TRP B 50 N LYS C 985 0.97 REMARK 500 N GLY A 11 CB VAL J 487 0.98 REMARK 500 CB LYS A 69 C PRO F 281 0.98 REMARK 500 N THR A 13 N SER J 460 0.99 REMARK 500 CG2 THR A 13 C SER J 460 1.03 REMARK 500 CB SER A 55 CA THR F 298 1.05 REMARK 500 CA SER A 55 CA THR F 298 1.06 REMARK 500 N GLU A 78 O GLY B 37 1.06 REMARK 500 CA LEU B 49 CA ALA C 988 1.07 REMARK 500 CG GLU A 41 CG GLU J 461 1.08 REMARK 500 N GLY A 79 C GLY B 37 1.09 REMARK 500 C ASP A 75 CD1 TYR B 36 1.09 REMARK 500 CB LEU B 49 CA ALA C 988 1.10 REMARK 500 CG1 ILE A 77 CB ILE I 620 1.12 REMARK 500 OE1 GLU A 6 OH TYR B 36 1.13 REMARK 500 OD1 ASP A 8 CA PRO F 279 1.13 REMARK 500 OE2 GLU A 41 CD2 HIS J 462 1.14 REMARK 500 CD1 LEU B 49 O ILE C 987 1.16 REMARK 500 CD1 LEU B 41 CD GLU F 214 1.16 REMARK 500 REMARK 500 THIS ENTRY HAS 470 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA F 215 C ILE F 216 N 0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP I 622 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 GLY J 497 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 86.22 -153.07 REMARK 500 ALA A 39 -41.41 -176.29 REMARK 500 GLU A 41 44.23 72.88 REMARK 500 LYS A 71 -60.96 -108.33 REMARK 500 ASP A 75 -176.30 67.37 REMARK 500 ILE A 77 -119.52 -128.20 REMARK 500 GLU A 78 64.68 33.14 REMARK 500 ASN B 39 67.60 -67.19 REMARK 500 PHE B 57 49.01 -90.79 REMARK 500 ILE B 71 -40.23 -130.93 REMARK 500 ALA B 76 32.46 -94.22 REMARK 500 SER C 974 -76.11 -69.13 REMARK 500 LEU C 975 -43.66 -18.78 REMARK 500 ILE C 987 3.60 -61.10 REMARK 500 PHE E 88 34.77 -85.08 REMARK 500 VAL E 89 -65.76 -93.98 REMARK 500 PRO E 91 -1.47 -58.94 REMARK 500 ASN E 101 41.27 -77.49 REMARK 500 ARG E 110 -86.21 -112.50 REMARK 500 ASN E 111 98.25 -66.95 REMARK 500 ALA E 112 2.42 -163.69 REMARK 500 ALA F 215 -119.23 52.39 REMARK 500 ALA F 293 -6.87 83.99 REMARK 500 VAL H 300 18.16 -65.91 REMARK 500 ALA H 301 -41.14 -134.04 REMARK 500 VAL H 304 -7.47 -56.33 REMARK 500 PRO H 308 70.38 -64.62 REMARK 500 GLU H 309 2.53 -56.45 REMARK 500 PRO H 312 12.95 -60.05 REMARK 500 ILE I 620 -62.35 -93.17 REMARK 500 ALA I 629 170.89 -58.81 REMARK 500 ARG J 459 41.07 -100.38 REMARK 500 GLU J 483 -69.82 -96.57 REMARK 500 GLU J 491 -65.20 -123.19 REMARK 500 GLN L 791 -70.27 -86.62 REMARK 500 LEU L 792 -39.59 -33.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 45 GLY B 46 -125.04 REMARK 500 GLY B 46 LYS B 47 -112.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 47 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS B 70 -11.05 REMARK 500 ALA F 215 -11.38 REMARK 500 ALA H 301 -10.99 REMARK 500 LEU H 302 -12.20 REMARK 500 ILE I 620 14.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5004 RELATED DB: EMDB REMARK 900 STRUCTURE OF A COPPER PUMP SUGGESTS A REGULATORY ROLE FOR ITS METAL- REMARK 900 BINDING DOMAIN REMARK 900 RELATED ID: EMD-5005 RELATED DB: EMDB REMARK 900 STRUCTURE OF A COPPER PUMP SUGGESTS A REGULATORY ROLE FOR ITS METAL- REMARK 900 BINDING DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 EM MAP TO WHICH THIS SEQUENCE WAS MODELED REMARK 999 PDB ENTRIES USED TO MODEL CHAIN A: 1JWW REMARK 999 PDB ENTRIES USED TO MODEL CHAINS B, C, D, E, G, H, K, L: 1WPG REMARK 999 PDB ENTRIES USED TO MODEL CHAIN F: 2HC8 REMARK 999 PDB ENTRIES USED TO MODEL CHAINS I, J: 2B8E DBREF 2VOY A 1 76 UNP O32220 COPA_BACSU 72 147 DBREF 2VOY A 77 80 PDB 2VOY 2VOY 77 80 DBREF 2VOY B 36 77 UNP P04191 AT2A1_RABIT 36 77 DBREF 2VOY C 967 988 UNP P04191 AT2A1_RABIT 967 988 DBREF 2VOY D 832 854 UNP P04191 AT2A1_RABIT 832 854 DBREF 2VOY E 86 115 UNP P04191 AT2A1_RABIT 86 115 DBREF 2VOY F 214 326 UNP O29777 O29777_ARCFU 214 326 DBREF 2VOY G 243 278 UNP P04191 AT2A1_RABIT 243 278 DBREF 2VOY H 289 336 UNP P04191 AT2A1_RABIT 289 336 DBREF 2VOY I 410 431 PDB 2VOY 2VOY 410 431 DBREF 2VOY I 550 663 PDB 2VOY 2VOY 550 663 DBREF 2VOY J 432 549 UNP O29777 O29777_ARCFU 432 549 DBREF 2VOY K 749 780 UNP P04191 AT2A1_RABIT 749 780 DBREF 2VOY L 789 809 UNP P04191 AT2A1_RABIT 789 809 SEQRES 1 A 80 VAL THR GLU LYS ALA GLU PHE ASP ILE GLU GLY MET THR SEQRES 2 A 80 CYS ALA ALA CYS ALA ASN ARG ILE GLU LYS ARG LEU ASN SEQRES 3 A 80 LYS ILE GLU GLY VAL ALA ASN ALA PRO VAL ASN PHE ALA SEQRES 4 A 80 LEU GLU THR VAL THR VAL GLU TYR ASN PRO LYS GLU ALA SEQRES 5 A 80 SER VAL SER ASP LEU LYS GLU ALA VAL ASP LYS LEU GLY SEQRES 6 A 80 TYR LYS LEU LYS LEU LYS GLY GLU GLN ASP SER ILE GLU SEQRES 7 A 80 GLY ARG SEQRES 1 B 42 TYR GLY HIS ASN GLU LEU PRO ALA GLU GLU GLY LYS SER SEQRES 2 B 42 LEU TRP GLU LEU VAL ILE GLU GLN PHE GLU ASP LEU LEU SEQRES 3 B 42 VAL ARG ILE LEU LEU LEU ALA ALA CYS ILE SER PHE VAL SEQRES 4 B 42 LEU ALA TRP SEQRES 1 C 22 TRP LEU MET VAL LEU LYS ILE SER LEU PRO VAL ILE GLY SEQRES 2 C 22 LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 1 D 23 TRP LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL SEQRES 2 D 23 GLY ALA ALA THR VAL GLY ALA ALA ALA TRP SEQRES 1 E 30 THR ALA PHE VAL GLU PRO PHE VAL ILE LEU LEU ILE LEU SEQRES 2 E 30 ILE ALA ASN ALA ILE VAL GLY VAL TRP GLN GLU ARG ASN SEQRES 3 E 30 ALA GLU ASN ALA SEQRES 1 F 113 GLU ALA ILE LYS LYS LEU VAL GLY LEU GLN ALA LYS THR SEQRES 2 F 113 ALA VAL VAL ILE ARG ASP GLY LYS GLU ILE ALA VAL PRO SEQRES 3 F 113 VAL GLU GLU VAL ALA VAL GLY ASP ILE VAL ILE VAL ARG SEQRES 4 F 113 PRO GLY GLU LYS ILE PRO VAL ASP GLY VAL VAL VAL GLU SEQRES 5 F 113 GLY GLU SER TYR VAL ASP GLU SER MET ILE SER GLY GLU SEQRES 6 F 113 PRO VAL PRO VAL LEU LYS SER LYS GLY ASP GLU VAL PHE SEQRES 7 F 113 GLY ALA THR ILE ASN ASN THR GLY VAL LEU LYS ILE ARG SEQRES 8 F 113 ALA THR ARG VAL GLY GLY GLU THR LEU LEU ALA GLN ILE SEQRES 9 F 113 VAL LYS LEU VAL GLU ASP ALA MET GLY SEQRES 1 G 36 GLU GLN ASP LYS THR PRO LEU GLN GLN LYS LEU ASP GLU SEQRES 2 G 36 PHE GLY GLU GLN LEU SER LYS VAL ILE SER LEU ILE CYS SEQRES 3 G 36 VAL ALA VAL TRP LEU ILE ASN ILE GLY HIS SEQRES 1 H 48 ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA VAL ALA SEQRES 2 H 48 LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO ALA VAL SEQRES 3 H 48 ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG MET ALA SEQRES 4 H 48 LYS LYS ASN ALA ILE VAL ARG SER LEU SEQRES 1 I 128 ASP ALA LEU GLU VAL ALA GLU LYS VAL THR ALA VAL ILE SEQRES 2 I 128 PHE ASP LYS THR GLY THR LEU THR LYS LEU LYS GLU SER SEQRES 3 I 128 ALA LYS PRO ALA VAL GLN GLU LEU LYS ARG MSE GLY ILE SEQRES 4 I 128 LYS VAL GLY MSE ILE THR GLY ASP ASN TRP ARG SER ALA SEQRES 5 I 128 GLU ALA ILE SER ARG GLU LEU ASN LEU ASP LEU VAL ILE SEQRES 6 I 128 ALA GLU VAL LEU PRO HIS GLN LYS SER GLU GLU VAL LYS SEQRES 7 I 128 LYS LEU GLN ALA LYS GLU VAL VAL ALA PHE VAL GLY ASP SEQRES 8 I 128 GLY ILE ASN ASP ALA PRO ALA LEU ALA GLN ALA ASP LEU SEQRES 9 I 128 GLY ILE ALA VAL GLY SER GLY ASP ILE VAL LEU ILE ARG SEQRES 10 I 128 ASP ASP LEU ARG ASP VAL VAL ALA ALA ILE GLN SEQRES 1 J 118 GLY LYS PRO GLU VAL THR ASP LEU VAL PRO LEU ASN GLY SEQRES 2 J 118 ASP GLU ARG GLU LEU LEU ARG LEU ALA ALA ILE ALA GLU SEQRES 3 J 118 ARG ARG SER GLU HIS PRO ILE ALA GLU ALA ILE VAL LYS SEQRES 4 J 118 LYS ALA LEU GLU HIS GLY ILE GLU LEU GLY GLU PRO GLU SEQRES 5 J 118 LYS VAL GLU VAL ILE ALA GLY GLU GLY VAL VAL ALA ASP SEQRES 6 J 118 GLY ILE LEU VAL GLY ASN LYS ARG LEU MSE GLU ASP PHE SEQRES 7 J 118 GLY VAL ALA VAL SER ASN GLU VAL GLU LEU ALA LEU GLU SEQRES 8 J 118 LYS LEU GLU ARG GLU ALA LYS THR ALA VAL ILE VAL ALA SEQRES 9 J 118 ARG ASN GLY ARG VAL GLU GLY ILE ILE ALA VAL SER ASP SEQRES 10 J 118 THR SEQRES 1 K 32 GLU GLY ARG ALA ILE TYR ASN ASN MET LYS GLN PHE ILE SEQRES 2 K 32 ARG TYR LEU ILE SER SER ASN VAL GLY GLU VAL VAL CYS SEQRES 3 K 32 ILE PHE LEU THR ALA ALA SEQRES 1 L 21 PRO VAL GLN LEU LEU TRP VAL ASN LEU VAL THR ASP GLY SEQRES 2 L 21 LEU PRO ALA THR ALA LEU GLY PHE MODRES 2VOY MSE I 564 MET SELENOMETHIONINE MODRES 2VOY MSE I 570 MET SELENOMETHIONINE MODRES 2VOY MSE J 506 MET SELENOMETHIONINE HET MSE I 564 8 HET MSE I 570 8 HET MSE J 506 8 HETNAM MSE SELENOMETHIONINE FORMUL 9 MSE 3(C5 H11 N O2 SE) HELIX 1 1 CYS A 14 LYS A 27 1 14 HELIX 2 2 SER A 53 GLY A 65 1 13 HELIX 3 3 LEU B 49 PHE B 57 1 9 HELIX 4 4 ASP B 59 ALA B 76 1 18 HELIX 5 5 TRP C 967 LYS C 972 1 6 HELIX 6 6 LEU C 975 LYS C 985 1 11 HELIX 7 7 PHE C 986 ALA C 988 5 3 HELIX 8 8 TRP D 832 TRP D 854 1 23 HELIX 9 9 VAL E 89 VAL E 104 1 16 HELIX 10 10 GLU F 214 GLN F 223 1 10 HELIX 11 11 GLU F 241 VAL F 243 5 3 HELIX 12 12 GLU F 272 GLY F 277 1 6 HELIX 13 13 VAL F 308 GLU F 311 5 4 HELIX 14 14 THR F 312 GLY F 326 1 15 HELIX 15 15 THR G 247 ASN G 275 1 29 HELIX 16 16 ILE H 293 ILE H 298 1 6 HELIX 17 17 ILE H 298 ALA H 306 1 9 HELIX 18 18 GLY H 310 LYS H 328 1 19 HELIX 19 19 ASP I 410 VAL I 418 1 9 HELIX 20 20 VAL A 1 THR I 430 1 21 HELIX 21 21 SER I 553 LYS I 562 1 10 HELIX 22 22 ASN I 575 ASN I 587 1 13 HELIX 23 23 LEU I 596 HIS I 598 5 3 HELIX 24 24 GLN I 599 GLN I 608 1 10 HELIX 25 25 ASP I 622 ALA I 629 1 8 HELIX 26 26 LEU I 655 GLN I 663 1 9 HELIX 27 27 ASP J 445 GLU J 457 1 13 HELIX 28 28 HIS J 462 GLU J 474 1 13 HELIX 29 29 SER J 514 ARG J 526 1 13 HELIX 30 30 GLU K 749 ALA K 780 1 32 HELIX 31 31 PRO L 789 VAL L 798 1 10 HELIX 32 32 ASP L 800 GLY L 808 1 9 SHEET 1 AA 4 VAL A 31 ASN A 33 0 SHEET 2 AA 4 THR A 42 TYR A 47 -1 O GLU A 46 N ALA A 32 SHEET 3 AA 4 GLU A 3 GLU A 10 -1 O GLU A 3 N TYR A 47 SHEET 4 AA 4 LYS A 67 LEU A 70 -1 O LYS A 67 N GLU A 10 SHEET 1 FA 6 LYS F 234 PRO F 239 0 SHEET 2 FA 6 THR F 226 ARG F 231 -1 O ALA F 227 N VAL F 238 SHEET 3 FA 6 ILE F 248 VAL F 251 -1 O ILE F 248 N ILE F 230 SHEET 4 FA 6 LEU F 301 ARG F 307 -1 O LEU F 301 N VAL F 251 SHEET 5 FA 6 ASP F 260 GLU F 265 -1 O ASP F 260 N THR F 306 SHEET 6 FA 6 GLU F 289 VAL F 290 -1 O VAL F 290 N GLY F 261 SHEET 1 FB 3 VAL F 282 LYS F 284 0 SHEET 2 FB 3 SER F 268 ASP F 271 -1 O SER F 268 N LYS F 284 SHEET 3 FB 3 ILE F 295 ASN F 296 -1 O ILE F 295 N ASP F 271 SHEET 1 HA 5 ILE H 332 VAL H 333 0 SHEET 2 HA 5 ILE I 648 LEU I 650 -1 O VAL I 649 N ILE H 332 SHEET 3 HA 5 LEU I 631 VAL I 635 1 O GLY I 632 N ILE I 648 SHEET 4 HA 5 VAL I 613 GLY I 617 1 O PHE I 615 N ILE I 633 SHEET 5 HA 5 ALA I 420 PHE I 423 1 O ALA I 420 N ALA I 614 SHEET 1 JA 6 GLU J 435 PRO J 441 0 SHEET 2 JA 6 ARG J 539 SER J 547 -1 O ILE J 543 N VAL J 440 SHEET 3 JA 6 THR J 530 ARG J 536 -1 O THR J 530 N VAL J 546 SHEET 4 JA 6 ILE J 498 GLY J 501 -1 O LEU J 499 N ALA J 535 SHEET 5 JA 6 GLY J 492 ALA J 495 -1 O VAL J 493 N VAL J 500 SHEET 6 JA 6 VAL J 485 ILE J 488 -1 O GLU J 486 N VAL J 494 LINK C ARG I 563 N MSE I 564 1555 1555 1.33 LINK C MSE I 564 N GLY I 565 1555 1555 1.33 LINK C GLY I 569 N MSE I 570 1555 1555 1.33 LINK C MSE I 570 N ILE I 571 1555 1555 1.32 LINK C LEU J 505 N MSE J 506 1555 1555 1.34 LINK C MSE J 506 N GLU J 507 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000