data_2VPG # _entry.id 2VPG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VPG PDBE EBI-35478 WWPDB D_1290035478 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2VP7 unspecified 'DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX' PDB 2VPB unspecified 'DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX' PDB 2VPD unspecified 'DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX' PDB 2VPE unspecified 'DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VPG _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-02-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fiedler, M.' 1 'Sanchez-Barrena, M.J.' 2 'Nekrasov, M.' 3 'Mieszczanek, J.' 4 'Rybin, V.' 5 'Muller, J.' 6 'Bienz, M.' 7 'Evans, P.' 8 # _citation.id primary _citation.title 'Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 30 _citation.page_first 507 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18498752 _citation.pdbx_database_id_DOI 10.1016/J.MOLCEL.2008.03.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fiedler, M.' 1 ? primary 'Sanchez-Barrena, M.J.' 2 ? primary 'Nekrasov, M.' 3 ? primary 'Mieszczanek, J.' 4 ? primary 'Rybin, V.' 5 ? primary 'Muller, J.' 6 ? primary 'Evans, P.' 7 ? primary 'Bienz, M.' 8 ? # _cell.entry_id 2VPG _cell.length_a 105.750 _cell.length_b 105.750 _cell.length_c 51.420 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VPG _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PYGOPUS HOMOLOG 1' 6759.612 2 ? ? 'PHD DOMAIN, RESIDUES 340-398' ? 2 polymer man 'B-CELL CLL/LYMPHOMA 9 PROTEIN' 3444.991 2 ? ? 'HD1 DOMAIN, RESIDUES 177-205' ? 3 polymer syn 'HISTONE H3 TAIL' 2003.377 2 ? ? ? '18-MER H3R2ME2AK4ME2, DIMETHYLATION AT LYS K4, ASYMMETRIC DIMETHYLATION AT R2' 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 6 water nat water 18.015 259 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 HPYGO1 2 'B-CELL LYMPHOMA 9 PROTEIN, BCL-9, PROTEIN LEGLESS HOMOLOG, BCL9' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GAMAVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD GAMAVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD A,C ? 2 'polypeptide(L)' no no GAMVYVFSTEMANKAAEAVLKGQVETIVSFHI GAMVYVFSTEMANKAAEAVLKGQVETIVSFHI B,D ? 3 'polypeptide(L)' no yes 'A(DA2)T(MLY)QTARKSTGGKAPRK' ARTKQTARKSTGGKAPRK P,R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ALA n 1 5 VAL n 1 6 TYR n 1 7 PRO n 1 8 CYS n 1 9 GLY n 1 10 ILE n 1 11 CYS n 1 12 THR n 1 13 ASN n 1 14 GLU n 1 15 VAL n 1 16 ASN n 1 17 ASP n 1 18 ASP n 1 19 GLN n 1 20 ASP n 1 21 ALA n 1 22 ILE n 1 23 LEU n 1 24 CYS n 1 25 GLU n 1 26 ALA n 1 27 SER n 1 28 CYS n 1 29 GLN n 1 30 LYS n 1 31 TRP n 1 32 PHE n 1 33 HIS n 1 34 ARG n 1 35 ILE n 1 36 CYS n 1 37 THR n 1 38 GLY n 1 39 MET n 1 40 THR n 1 41 GLU n 1 42 THR n 1 43 ALA n 1 44 TYR n 1 45 GLY n 1 46 LEU n 1 47 LEU n 1 48 THR n 1 49 ALA n 1 50 GLU n 1 51 ALA n 1 52 SER n 1 53 ALA n 1 54 VAL n 1 55 TRP n 1 56 GLY n 1 57 CYS n 1 58 ASP n 1 59 THR n 1 60 CYS n 1 61 MET n 1 62 ALA n 1 63 ASP n 2 1 GLY n 2 2 ALA n 2 3 MET n 2 4 VAL n 2 5 TYR n 2 6 VAL n 2 7 PHE n 2 8 SER n 2 9 THR n 2 10 GLU n 2 11 MET n 2 12 ALA n 2 13 ASN n 2 14 LYS n 2 15 ALA n 2 16 ALA n 2 17 GLU n 2 18 ALA n 2 19 VAL n 2 20 LEU n 2 21 LYS n 2 22 GLY n 2 23 GLN n 2 24 VAL n 2 25 GLU n 2 26 THR n 2 27 ILE n 2 28 VAL n 2 29 SER n 2 30 PHE n 2 31 HIS n 2 32 ILE n 3 1 ALA n 3 2 DA2 n 3 3 THR n 3 4 MLY n 3 5 GLN n 3 6 THR n 3 7 ALA n 3 8 ARG n 3 9 LYS n 3 10 SER n 3 11 THR n 3 12 GLY n 3 13 GLY n 3 14 LYS n 3 15 ALA n 3 16 PRO n 3 17 ARG n 3 18 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' CODONPLUS-RIL ? ? ? ? ? ? ? 'BI-CISTRONIC EXPRESSION VECTOR' ? ? ? ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' CODONPLUS-RIL ? ? ? ? ? ? ? 'BI-CISTRONIC EXPRESSION VECTOR' ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VPG 1 ? ? 2VPG ? 2 UNP PYGO1_HUMAN 1 ? ? Q9Y3Y4 ? 3 PDB 2VPG 2 ? ? 2VPG ? 4 UNP BCL9_HUMAN 2 ? ? O00512 ? 5 PDB 2VPG 3 ? ? 2VPG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VPG A 1 ? 4 ? 2VPG 336 ? 339 ? 336 339 2 2 2VPG A 5 ? 63 ? Q9Y3Y4 340 ? 398 ? 340 398 3 3 2VPG B 1 ? 3 ? 2VPG 174 ? 176 ? 174 176 4 4 2VPG B 4 ? 32 ? O00512 177 ? 205 ? 177 205 5 1 2VPG C 1 ? 4 ? 2VPG 336 ? 339 ? 336 339 6 2 2VPG C 5 ? 63 ? Q9Y3Y4 340 ? 398 ? 340 398 7 3 2VPG D 1 ? 3 ? 2VPG 174 ? 176 ? 174 176 8 4 2VPG D 4 ? 32 ? O00512 177 ? 205 ? 177 205 9 5 2VPG P 1 ? 18 ? 2VPG 1 ? 18 ? 1 18 10 5 2VPG R 1 ? 18 ? 2VPG 1 ? 18 ? 1 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA2 'L-peptide linking' n NG,NG-DIMETHYL-L-ARGININE ADMA 'C8 H18 N4 O2' 202.254 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2VPG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_percent_sol 56.74 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'HANGING-DROP VAPOUR-DIFFUSION METHOD AT 19 CELSIUS. CRYSTALLIZATION CONDITIONS: 20% PEG-4000, 20% ISO-PROPANOL, 0.1 M NA CITRATE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2007-11-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DIAMOND (111), GE(220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.934 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VPG _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 26.44 _reflns.d_resolution_high 1.60 _reflns.number_obs 37079 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.69 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.60 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.10 _reflns_shell.pdbx_redundancy 7.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VPG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 37079 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 74.74 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.201 _refine.ls_R_factor_R_free 0.218 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1953 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 21.98 _refine.aniso_B[1][1] 0.65000 _refine.aniso_B[2][2] 0.65000 _refine.aniso_B[3][3] -1.29000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2VPE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.079 _refine.pdbx_overall_ESU_R_Free 0.077 _refine.overall_SU_ML 0.060 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.706 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1477 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 259 _refine_hist.number_atoms_total 1746 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 74.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1514 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.210 1.957 ? 2047 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.357 5.000 ? 194 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.323 26.207 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.379 15.000 ? 228 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.252 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 240 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1109 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.192 0.200 ? 720 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.302 0.200 ? 1049 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.137 0.200 ? 166 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.181 0.200 ? 91 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.119 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.822 1.500 ? 1003 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.406 2.000 ? 1557 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.040 3.000 ? 593 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.125 4.500 ? 490 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.64 _refine_ls_shell.number_reflns_R_work 2732 _refine_ls_shell.R_factor_R_work 0.2720 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3210 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 113 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VPG _struct.title 'Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex' _struct.pdbx_descriptor 'PYGOPUS HOMOLOG 1, B-CELL CLL/LYMPHOMA 9 PROTEIN, HISTONE H3 TAIL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VPG _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.text ;GENE REGULATION, WNT SIGNALING PATHWAY, WNT SIGNALING COMPLEX, CHROMOSOMAL REARRANGEMENT, SIGNALING PROTEIN, BCL9 HD1 DOMAIN, HPYGO1 PHD DOMAIN, PROTO-ONCOGENE, PHOSPHOPROTEIN, HISTONE H3K4ME2, ZINC, NUCLEUS, ZINC-FINGER, METAL-BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? P N N 6 ? Q N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 34 ? GLY A 38 ? ARG A 369 GLY A 373 1 ? 5 HELX_P HELX_P2 2 THR A 40 ? GLU A 50 ? THR A 375 GLU A 385 1 ? 11 HELX_P HELX_P3 3 CYS A 57 ? ASP A 63 ? CYS A 392 ASP A 398 1 ? 7 HELX_P HELX_P4 4 SER B 8 ? LYS B 21 ? SER B 181 LYS B 194 1 ? 14 HELX_P HELX_P5 5 ARG C 34 ? GLY C 38 ? ARG C 369 GLY C 373 1 ? 5 HELX_P HELX_P6 6 THR C 40 ? GLU C 50 ? THR C 375 GLU C 385 1 ? 11 HELX_P HELX_P7 7 CYS C 57 ? ASP C 63 ? CYS C 392 ASP C 398 1 ? 7 HELX_P HELX_P8 8 SER D 8 ? LYS D 21 ? SER D 181 LYS D 194 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? H ZN . ZN ? ? ? 1_555 A CYS 8 SG ? ? A ZN 1400 A CYS 343 1_555 ? ? ? ? ? ? ? 2.332 ? metalc2 metalc ? ? H ZN . ZN ? ? ? 1_555 A HIS 33 ND1 ? ? A ZN 1400 A HIS 368 1_555 ? ? ? ? ? ? ? 2.078 ? metalc3 metalc ? ? H ZN . ZN ? ? ? 1_555 A CYS 11 SG ? ? A ZN 1400 A CYS 346 1_555 ? ? ? ? ? ? ? 2.317 ? metalc4 metalc ? ? H ZN . ZN ? ? ? 1_555 A CYS 36 SG ? ? A ZN 1400 A CYS 371 1_555 ? ? ? ? ? ? ? 2.310 ? metalc5 metalc ? ? I ZN . ZN ? ? ? 1_555 A CYS 24 SG ? ? A ZN 1401 A CYS 359 1_555 ? ? ? ? ? ? ? 2.224 ? metalc6 metalc ? ? I ZN . ZN ? ? ? 1_555 A CYS 57 SG ? ? A ZN 1401 A CYS 392 1_555 ? ? ? ? ? ? ? 2.397 ? metalc7 metalc ? ? I ZN . ZN ? ? ? 1_555 A CYS 60 SG ? ? A ZN 1401 A CYS 395 1_555 ? ? ? ? ? ? ? 2.374 ? metalc8 metalc ? ? I ZN . ZN ? ? ? 1_555 A CYS 28 SG ? ? A ZN 1401 A CYS 363 1_555 ? ? ? ? ? ? ? 2.346 ? metalc9 metalc ? ? J ZN . ZN ? ? ? 1_555 C CYS 11 SG ? ? C ZN 1399 C CYS 346 1_555 ? ? ? ? ? ? ? 2.330 ? metalc10 metalc ? ? J ZN . ZN ? ? ? 1_555 C HIS 33 ND1 ? ? C ZN 1399 C HIS 368 1_555 ? ? ? ? ? ? ? 2.148 ? metalc11 metalc ? ? J ZN . ZN ? ? ? 1_555 C CYS 36 SG ? ? C ZN 1399 C CYS 371 1_555 ? ? ? ? ? ? ? 2.324 ? metalc12 metalc ? ? J ZN . ZN ? ? ? 1_555 C CYS 8 SG ? ? C ZN 1399 C CYS 343 1_555 ? ? ? ? ? ? ? 2.383 ? metalc13 metalc ? ? K ZN . ZN ? ? ? 1_555 C CYS 57 SG ? ? C ZN 1400 C CYS 392 1_555 ? ? ? ? ? ? ? 2.462 ? metalc14 metalc ? ? K ZN . ZN ? ? ? 1_555 C CYS 60 SG ? ? C ZN 1400 C CYS 395 1_555 ? ? ? ? ? ? ? 2.395 ? metalc15 metalc ? ? K ZN . ZN ? ? ? 1_555 C CYS 24 SG ? ? C ZN 1400 C CYS 359 1_555 ? ? ? ? ? ? ? 2.253 ? metalc16 metalc ? ? K ZN . ZN ? ? ? 1_555 C CYS 28 SG ? ? C ZN 1400 C CYS 363 1_555 ? ? ? ? ? ? ? 2.323 ? covale1 covale both ? E ALA 1 C ? ? ? 1_555 E DA2 2 N ? ? P ALA 1 P DA2 2 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale both ? E DA2 2 C ? ? ? 1_555 E THR 3 N ? ? P DA2 2 P THR 3 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale both ? E THR 3 C ? ? ? 1_555 E MLY 4 N ? ? P THR 3 P MLY 4 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale both ? E MLY 4 C ? ? ? 1_555 E GLN 5 N ? ? P MLY 4 P GLN 5 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale both ? F ALA 1 C ? ? ? 1_555 F DA2 2 N B ? R ALA 1 R DA2 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale both ? F ALA 1 C ? ? ? 1_555 F DA2 2 N A ? R ALA 1 R DA2 2 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale both ? F DA2 2 C A ? ? 1_555 F THR 3 N ? ? R DA2 2 R THR 3 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale both ? F DA2 2 C B ? ? 1_555 F THR 3 N ? ? R DA2 2 R THR 3 1_555 ? ? ? ? ? ? ? 1.333 ? covale9 covale both ? F THR 3 C ? ? ? 1_555 F MLY 4 N ? ? R THR 3 R MLY 4 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale both ? F MLY 4 C ? ? ? 1_555 F GLN 5 N ? ? R MLY 4 R GLN 5 1_555 ? ? ? ? ? ? ? 1.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? CA ? 2 ? CB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? parallel CA 1 2 ? anti-parallel CB 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ALA A 21 ? LEU A 23 ? ALA A 356 LEU A 358 AA 2 TRP A 31 ? HIS A 33 ? TRP A 366 HIS A 368 AB 1 ALA A 53 ? TRP A 55 ? ALA A 388 TRP A 390 AB 2 TYR B 5 ? PHE B 7 ? TYR B 178 PHE B 180 CA 1 ALA C 21 ? LEU C 23 ? ALA C 356 LEU C 358 CA 2 TRP C 31 ? HIS C 33 ? TRP C 366 HIS C 368 CB 1 ALA C 53 ? TRP C 55 ? ALA C 388 TRP C 390 CB 2 TYR D 5 ? PHE D 7 ? TYR D 178 PHE D 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 22 ? N ILE A 357 O PHE A 32 ? O PHE A 367 AB 1 2 N VAL A 54 ? N VAL A 389 O TYR B 5 ? O TYR B 178 CA 1 2 N ILE C 22 ? N ILE C 357 O PHE C 32 ? O PHE C 367 CB 1 2 N VAL C 54 ? N VAL C 389 O TYR D 5 ? O TYR D 178 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 1399' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN C 1399' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN C 1400' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1400' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLN A 19 ? GLN A 354 . ? 1_555 ? 2 AC1 6 HIS A 33 ? HIS A 368 . ? 1_555 ? 3 AC1 6 HOH L . ? HOH A 2092 . ? 1_555 ? 4 AC1 6 HOH L . ? HOH A 2093 . ? 1_555 ? 5 AC1 6 GLY C 1 ? GLY C 336 . ? 8_555 ? 6 AC1 6 ASN C 13 ? ASN C 348 . ? 1_555 ? 7 AC2 4 CYS C 8 ? CYS C 343 . ? 1_555 ? 8 AC2 4 CYS C 11 ? CYS C 346 . ? 1_555 ? 9 AC2 4 HIS C 33 ? HIS C 368 . ? 1_555 ? 10 AC2 4 CYS C 36 ? CYS C 371 . ? 1_555 ? 11 AC3 4 CYS C 24 ? CYS C 359 . ? 1_555 ? 12 AC3 4 CYS C 28 ? CYS C 363 . ? 1_555 ? 13 AC3 4 CYS C 57 ? CYS C 392 . ? 1_555 ? 14 AC3 4 CYS C 60 ? CYS C 395 . ? 1_555 ? 15 AC4 4 CYS A 8 ? CYS A 343 . ? 1_555 ? 16 AC4 4 CYS A 11 ? CYS A 346 . ? 1_555 ? 17 AC4 4 HIS A 33 ? HIS A 368 . ? 1_555 ? 18 AC4 4 CYS A 36 ? CYS A 371 . ? 1_555 ? 19 AC5 4 CYS A 24 ? CYS A 359 . ? 1_555 ? 20 AC5 4 CYS A 28 ? CYS A 363 . ? 1_555 ? 21 AC5 4 CYS A 57 ? CYS A 392 . ? 1_555 ? 22 AC5 4 CYS A 60 ? CYS A 395 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VPG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VPG _atom_sites.fract_transf_matrix[1][1] 0.009456 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009456 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019448 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 336 ? ? ? A . n A 1 2 ALA 2 337 ? ? ? A . n A 1 3 MET 3 338 338 MET MET A . n A 1 4 ALA 4 339 339 ALA ALA A . n A 1 5 VAL 5 340 340 VAL VAL A . n A 1 6 TYR 6 341 341 TYR TYR A . n A 1 7 PRO 7 342 342 PRO PRO A . n A 1 8 CYS 8 343 343 CYS CYS A . n A 1 9 GLY 9 344 344 GLY GLY A . n A 1 10 ILE 10 345 345 ILE ILE A . n A 1 11 CYS 11 346 346 CYS CYS A . n A 1 12 THR 12 347 347 THR THR A . n A 1 13 ASN 13 348 348 ASN ASN A . n A 1 14 GLU 14 349 349 GLU GLU A . n A 1 15 VAL 15 350 350 VAL VAL A . n A 1 16 ASN 16 351 351 ASN ASN A . n A 1 17 ASP 17 352 352 ASP ASP A . n A 1 18 ASP 18 353 353 ASP ASP A . n A 1 19 GLN 19 354 354 GLN GLN A . n A 1 20 ASP 20 355 355 ASP ASP A . n A 1 21 ALA 21 356 356 ALA ALA A . n A 1 22 ILE 22 357 357 ILE ILE A . n A 1 23 LEU 23 358 358 LEU LEU A . n A 1 24 CYS 24 359 359 CYS CYS A . n A 1 25 GLU 25 360 360 GLU GLU A . n A 1 26 ALA 26 361 361 ALA ALA A . n A 1 27 SER 27 362 362 SER SER A . n A 1 28 CYS 28 363 363 CYS CYS A . n A 1 29 GLN 29 364 364 GLN GLN A . n A 1 30 LYS 30 365 365 LYS LYS A . n A 1 31 TRP 31 366 366 TRP TRP A . n A 1 32 PHE 32 367 367 PHE PHE A . n A 1 33 HIS 33 368 368 HIS HIS A . n A 1 34 ARG 34 369 369 ARG ARG A . n A 1 35 ILE 35 370 370 ILE ILE A . n A 1 36 CYS 36 371 371 CYS CYS A . n A 1 37 THR 37 372 372 THR THR A . n A 1 38 GLY 38 373 373 GLY GLY A . n A 1 39 MET 39 374 374 MET MET A . n A 1 40 THR 40 375 375 THR THR A . n A 1 41 GLU 41 376 376 GLU GLU A . n A 1 42 THR 42 377 377 THR THR A . n A 1 43 ALA 43 378 378 ALA ALA A . n A 1 44 TYR 44 379 379 TYR TYR A . n A 1 45 GLY 45 380 380 GLY GLY A . n A 1 46 LEU 46 381 381 LEU LEU A . n A 1 47 LEU 47 382 382 LEU LEU A . n A 1 48 THR 48 383 383 THR THR A . n A 1 49 ALA 49 384 384 ALA ALA A . n A 1 50 GLU 50 385 385 GLU GLU A . n A 1 51 ALA 51 386 386 ALA ALA A . n A 1 52 SER 52 387 387 SER SER A . n A 1 53 ALA 53 388 388 ALA ALA A . n A 1 54 VAL 54 389 389 VAL VAL A . n A 1 55 TRP 55 390 390 TRP TRP A . n A 1 56 GLY 56 391 391 GLY GLY A . n A 1 57 CYS 57 392 392 CYS CYS A . n A 1 58 ASP 58 393 393 ASP ASP A . n A 1 59 THR 59 394 394 THR THR A . n A 1 60 CYS 60 395 395 CYS CYS A . n A 1 61 MET 61 396 396 MET MET A . n A 1 62 ALA 62 397 397 ALA ALA A . n A 1 63 ASP 63 398 398 ASP ASP A . n B 2 1 GLY 1 174 174 GLY GLY B . n B 2 2 ALA 2 175 175 ALA ALA B . n B 2 3 MET 3 176 176 MET MET B . n B 2 4 VAL 4 177 177 VAL VAL B . n B 2 5 TYR 5 178 178 TYR TYR B . n B 2 6 VAL 6 179 179 VAL VAL B . n B 2 7 PHE 7 180 180 PHE PHE B . n B 2 8 SER 8 181 181 SER SER B . n B 2 9 THR 9 182 182 THR THR B . n B 2 10 GLU 10 183 183 GLU GLU B . n B 2 11 MET 11 184 184 MET MET B . n B 2 12 ALA 12 185 185 ALA ALA B . n B 2 13 ASN 13 186 186 ASN ASN B . n B 2 14 LYS 14 187 187 LYS LYS B . n B 2 15 ALA 15 188 188 ALA ALA B . n B 2 16 ALA 16 189 189 ALA ALA B . n B 2 17 GLU 17 190 190 GLU GLU B . n B 2 18 ALA 18 191 191 ALA ALA B . n B 2 19 VAL 19 192 192 VAL VAL B . n B 2 20 LEU 20 193 193 LEU LEU B . n B 2 21 LYS 21 194 194 LYS LYS B . n B 2 22 GLY 22 195 195 GLY GLY B . n B 2 23 GLN 23 196 196 GLN GLN B . n B 2 24 VAL 24 197 197 VAL VAL B . n B 2 25 GLU 25 198 198 GLU GLU B . n B 2 26 THR 26 199 199 THR THR B . n B 2 27 ILE 27 200 200 ILE ILE B . n B 2 28 VAL 28 201 201 VAL VAL B . n B 2 29 SER 29 202 202 SER SER B . n B 2 30 PHE 30 203 203 PHE PHE B . n B 2 31 HIS 31 204 ? ? ? B . n B 2 32 ILE 32 205 ? ? ? B . n C 1 1 GLY 1 336 336 GLY GLY C . n C 1 2 ALA 2 337 337 ALA ALA C . n C 1 3 MET 3 338 338 MET MET C . n C 1 4 ALA 4 339 339 ALA ALA C . n C 1 5 VAL 5 340 340 VAL VAL C . n C 1 6 TYR 6 341 341 TYR TYR C . n C 1 7 PRO 7 342 342 PRO PRO C . n C 1 8 CYS 8 343 343 CYS CYS C . n C 1 9 GLY 9 344 344 GLY GLY C . n C 1 10 ILE 10 345 345 ILE ILE C . n C 1 11 CYS 11 346 346 CYS CYS C . n C 1 12 THR 12 347 347 THR THR C . n C 1 13 ASN 13 348 348 ASN ASN C . n C 1 14 GLU 14 349 349 GLU GLU C . n C 1 15 VAL 15 350 350 VAL VAL C . n C 1 16 ASN 16 351 351 ASN ASN C . n C 1 17 ASP 17 352 352 ASP ASP C . n C 1 18 ASP 18 353 353 ASP ASP C . n C 1 19 GLN 19 354 354 GLN GLN C . n C 1 20 ASP 20 355 355 ASP ASP C . n C 1 21 ALA 21 356 356 ALA ALA C . n C 1 22 ILE 22 357 357 ILE ILE C . n C 1 23 LEU 23 358 358 LEU LEU C . n C 1 24 CYS 24 359 359 CYS CYS C . n C 1 25 GLU 25 360 360 GLU GLU C . n C 1 26 ALA 26 361 361 ALA ALA C . n C 1 27 SER 27 362 362 SER SER C . n C 1 28 CYS 28 363 363 CYS CYS C . n C 1 29 GLN 29 364 364 GLN GLN C . n C 1 30 LYS 30 365 365 LYS LYS C . n C 1 31 TRP 31 366 366 TRP TRP C . n C 1 32 PHE 32 367 367 PHE PHE C . n C 1 33 HIS 33 368 368 HIS HIS C . n C 1 34 ARG 34 369 369 ARG ARG C . n C 1 35 ILE 35 370 370 ILE ILE C . n C 1 36 CYS 36 371 371 CYS CYS C . n C 1 37 THR 37 372 372 THR THR C . n C 1 38 GLY 38 373 373 GLY GLY C . n C 1 39 MET 39 374 374 MET MET C . n C 1 40 THR 40 375 375 THR THR C . n C 1 41 GLU 41 376 376 GLU GLU C . n C 1 42 THR 42 377 377 THR THR C . n C 1 43 ALA 43 378 378 ALA ALA C . n C 1 44 TYR 44 379 379 TYR TYR C . n C 1 45 GLY 45 380 380 GLY GLY C . n C 1 46 LEU 46 381 381 LEU LEU C . n C 1 47 LEU 47 382 382 LEU LEU C . n C 1 48 THR 48 383 383 THR THR C . n C 1 49 ALA 49 384 384 ALA ALA C . n C 1 50 GLU 50 385 385 GLU GLU C . n C 1 51 ALA 51 386 386 ALA ALA C . n C 1 52 SER 52 387 387 SER SER C . n C 1 53 ALA 53 388 388 ALA ALA C . n C 1 54 VAL 54 389 389 VAL VAL C . n C 1 55 TRP 55 390 390 TRP TRP C . n C 1 56 GLY 56 391 391 GLY GLY C . n C 1 57 CYS 57 392 392 CYS CYS C . n C 1 58 ASP 58 393 393 ASP ASP C . n C 1 59 THR 59 394 394 THR THR C . n C 1 60 CYS 60 395 395 CYS CYS C . n C 1 61 MET 61 396 396 MET MET C . n C 1 62 ALA 62 397 397 ALA ALA C . n C 1 63 ASP 63 398 398 ASP ASP C . n D 2 1 GLY 1 174 174 GLY GLY D . n D 2 2 ALA 2 175 175 ALA ALA D . n D 2 3 MET 3 176 176 MET MET D . n D 2 4 VAL 4 177 177 VAL VAL D . n D 2 5 TYR 5 178 178 TYR TYR D . n D 2 6 VAL 6 179 179 VAL VAL D . n D 2 7 PHE 7 180 180 PHE PHE D . n D 2 8 SER 8 181 181 SER SER D . n D 2 9 THR 9 182 182 THR THR D . n D 2 10 GLU 10 183 183 GLU GLU D . n D 2 11 MET 11 184 184 MET MET D . n D 2 12 ALA 12 185 185 ALA ALA D . n D 2 13 ASN 13 186 186 ASN ASN D . n D 2 14 LYS 14 187 187 LYS LYS D . n D 2 15 ALA 15 188 188 ALA ALA D . n D 2 16 ALA 16 189 189 ALA ALA D . n D 2 17 GLU 17 190 190 GLU GLU D . n D 2 18 ALA 18 191 191 ALA ALA D . n D 2 19 VAL 19 192 192 VAL VAL D . n D 2 20 LEU 20 193 193 LEU LEU D . n D 2 21 LYS 21 194 194 LYS LYS D . n D 2 22 GLY 22 195 195 GLY GLY D . n D 2 23 GLN 23 196 196 GLN GLN D . n D 2 24 VAL 24 197 197 VAL VAL D . n D 2 25 GLU 25 198 198 GLU GLU D . n D 2 26 THR 26 199 199 THR THR D . n D 2 27 ILE 27 200 200 ILE ILE D . n D 2 28 VAL 28 201 201 VAL VAL D . n D 2 29 SER 29 202 202 SER SER D . n D 2 30 PHE 30 203 203 PHE PHE D . n D 2 31 HIS 31 204 ? ? ? D . n D 2 32 ILE 32 205 ? ? ? D . n E 3 1 ALA 1 1 1 ALA ALA P . n E 3 2 DA2 2 2 2 DA2 DA2 P . n E 3 3 THR 3 3 3 THR THR P . n E 3 4 MLY 4 4 4 MLY MLY P . n E 3 5 GLN 5 5 5 GLN GLN P . n E 3 6 THR 6 6 6 THR THR P . n E 3 7 ALA 7 7 7 ALA ALA P . n E 3 8 ARG 8 8 ? ? ? P . n E 3 9 LYS 9 9 ? ? ? P . n E 3 10 SER 10 10 ? ? ? P . n E 3 11 THR 11 11 ? ? ? P . n E 3 12 GLY 12 12 ? ? ? P . n E 3 13 GLY 13 13 ? ? ? P . n E 3 14 LYS 14 14 ? ? ? P . n E 3 15 ALA 15 15 ? ? ? P . n E 3 16 PRO 16 16 ? ? ? P . n E 3 17 ARG 17 17 ? ? ? P . n E 3 18 LYS 18 18 ? ? ? P . n F 3 1 ALA 1 1 1 ALA ALA R . n F 3 2 DA2 2 2 2 DA2 DA2 R . n F 3 3 THR 3 3 3 THR THR R . n F 3 4 MLY 4 4 4 MLY MLY R . n F 3 5 GLN 5 5 5 GLN GLN R . n F 3 6 THR 6 6 6 THR THR R . n F 3 7 ALA 7 7 7 ALA ALA R . n F 3 8 ARG 8 8 ? ? ? R . n F 3 9 LYS 9 9 ? ? ? R . n F 3 10 SER 10 10 ? ? ? R . n F 3 11 THR 11 11 ? ? ? R . n F 3 12 GLY 12 12 ? ? ? R . n F 3 13 GLY 13 13 ? ? ? R . n F 3 14 LYS 14 14 ? ? ? R . n F 3 15 ALA 15 15 ? ? ? R . n F 3 16 PRO 16 16 ? ? ? R . n F 3 17 ARG 17 17 ? ? ? R . n F 3 18 LYS 18 18 ? ? ? R . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL 1 1399 1399 GOL GOL A . H 5 ZN 1 1400 1400 ZN ZN A . I 5 ZN 1 1401 1401 ZN ZN A . J 5 ZN 1 1399 1399 ZN ZN C . K 5 ZN 1 1400 1400 ZN ZN C . L 6 HOH 1 2001 2001 HOH HOH A . L 6 HOH 2 2002 2002 HOH HOH A . L 6 HOH 3 2003 2003 HOH HOH A . L 6 HOH 4 2004 2004 HOH HOH A . L 6 HOH 5 2005 2005 HOH HOH A . L 6 HOH 6 2006 2006 HOH HOH A . L 6 HOH 7 2007 2007 HOH HOH A . L 6 HOH 8 2008 2008 HOH HOH A . L 6 HOH 9 2009 2009 HOH HOH A . L 6 HOH 10 2010 2010 HOH HOH A . L 6 HOH 11 2011 2011 HOH HOH A . L 6 HOH 12 2012 2012 HOH HOH A . L 6 HOH 13 2013 2013 HOH HOH A . L 6 HOH 14 2014 2014 HOH HOH A . L 6 HOH 15 2015 2015 HOH HOH A . L 6 HOH 16 2016 2016 HOH HOH A . L 6 HOH 17 2017 2017 HOH HOH A . L 6 HOH 18 2018 2018 HOH HOH A . L 6 HOH 19 2019 2019 HOH HOH A . L 6 HOH 20 2020 2020 HOH HOH A . L 6 HOH 21 2021 2021 HOH HOH A . L 6 HOH 22 2022 2022 HOH HOH A . L 6 HOH 23 2023 2023 HOH HOH A . L 6 HOH 24 2024 2024 HOH HOH A . L 6 HOH 25 2025 2025 HOH HOH A . L 6 HOH 26 2026 2026 HOH HOH A . L 6 HOH 27 2027 2027 HOH HOH A . L 6 HOH 28 2028 2028 HOH HOH A . L 6 HOH 29 2029 2029 HOH HOH A . L 6 HOH 30 2030 2030 HOH HOH A . L 6 HOH 31 2031 2031 HOH HOH A . L 6 HOH 32 2032 2032 HOH HOH A . L 6 HOH 33 2033 2033 HOH HOH A . L 6 HOH 34 2034 2034 HOH HOH A . L 6 HOH 35 2035 2035 HOH HOH A . L 6 HOH 36 2036 2036 HOH HOH A . L 6 HOH 37 2037 2037 HOH HOH A . L 6 HOH 38 2038 2038 HOH HOH A . L 6 HOH 39 2039 2039 HOH HOH A . L 6 HOH 40 2040 2040 HOH HOH A . L 6 HOH 41 2041 2041 HOH HOH A . L 6 HOH 42 2042 2042 HOH HOH A . L 6 HOH 43 2043 2043 HOH HOH A . L 6 HOH 44 2044 2044 HOH HOH A . L 6 HOH 45 2045 2045 HOH HOH A . L 6 HOH 46 2046 2046 HOH HOH A . L 6 HOH 47 2047 2047 HOH HOH A . L 6 HOH 48 2048 2048 HOH HOH A . L 6 HOH 49 2049 2049 HOH HOH A . L 6 HOH 50 2050 2050 HOH HOH A . L 6 HOH 51 2051 2051 HOH HOH A . L 6 HOH 52 2052 2052 HOH HOH A . L 6 HOH 53 2053 2053 HOH HOH A . L 6 HOH 54 2054 2054 HOH HOH A . L 6 HOH 55 2055 2055 HOH HOH A . L 6 HOH 56 2056 2056 HOH HOH A . L 6 HOH 57 2057 2057 HOH HOH A . L 6 HOH 58 2058 2058 HOH HOH A . L 6 HOH 59 2059 2059 HOH HOH A . L 6 HOH 60 2060 2060 HOH HOH A . L 6 HOH 61 2061 2061 HOH HOH A . L 6 HOH 62 2062 2062 HOH HOH A . L 6 HOH 63 2063 2063 HOH HOH A . L 6 HOH 64 2064 2064 HOH HOH A . L 6 HOH 65 2065 2065 HOH HOH A . L 6 HOH 66 2066 2066 HOH HOH A . L 6 HOH 67 2067 2067 HOH HOH A . L 6 HOH 68 2068 2068 HOH HOH A . L 6 HOH 69 2069 2069 HOH HOH A . L 6 HOH 70 2070 2070 HOH HOH A . L 6 HOH 71 2071 2071 HOH HOH A . L 6 HOH 72 2072 2072 HOH HOH A . L 6 HOH 73 2073 2073 HOH HOH A . L 6 HOH 74 2074 2074 HOH HOH A . L 6 HOH 75 2075 2075 HOH HOH A . L 6 HOH 76 2076 2076 HOH HOH A . L 6 HOH 77 2077 2077 HOH HOH A . L 6 HOH 78 2078 2078 HOH HOH A . L 6 HOH 79 2079 2079 HOH HOH A . L 6 HOH 80 2080 2080 HOH HOH A . L 6 HOH 81 2081 2081 HOH HOH A . L 6 HOH 82 2082 2082 HOH HOH A . L 6 HOH 83 2083 2083 HOH HOH A . L 6 HOH 84 2084 2084 HOH HOH A . L 6 HOH 85 2085 2085 HOH HOH A . L 6 HOH 86 2086 2086 HOH HOH A . L 6 HOH 87 2087 2087 HOH HOH A . L 6 HOH 88 2088 2088 HOH HOH A . L 6 HOH 89 2089 2089 HOH HOH A . L 6 HOH 90 2090 2090 HOH HOH A . L 6 HOH 91 2091 2091 HOH HOH A . L 6 HOH 92 2092 2092 HOH HOH A . L 6 HOH 93 2093 2093 HOH HOH A . M 6 HOH 1 2001 2001 HOH HOH B . M 6 HOH 2 2002 2002 HOH HOH B . M 6 HOH 3 2003 2003 HOH HOH B . M 6 HOH 4 2004 2004 HOH HOH B . M 6 HOH 5 2005 2005 HOH HOH B . M 6 HOH 6 2006 2006 HOH HOH B . M 6 HOH 7 2007 2007 HOH HOH B . M 6 HOH 8 2008 2008 HOH HOH B . M 6 HOH 9 2009 2009 HOH HOH B . M 6 HOH 10 2010 2010 HOH HOH B . M 6 HOH 11 2011 2011 HOH HOH B . M 6 HOH 12 2012 2012 HOH HOH B . M 6 HOH 13 2013 2013 HOH HOH B . M 6 HOH 14 2014 2014 HOH HOH B . M 6 HOH 15 2015 2015 HOH HOH B . M 6 HOH 16 2016 2016 HOH HOH B . M 6 HOH 17 2017 2017 HOH HOH B . M 6 HOH 18 2018 2018 HOH HOH B . M 6 HOH 19 2019 2019 HOH HOH B . M 6 HOH 20 2020 2020 HOH HOH B . M 6 HOH 21 2021 2021 HOH HOH B . M 6 HOH 22 2022 2022 HOH HOH B . M 6 HOH 23 2023 2023 HOH HOH B . M 6 HOH 24 2024 2024 HOH HOH B . M 6 HOH 25 2025 2025 HOH HOH B . M 6 HOH 26 2026 2026 HOH HOH B . M 6 HOH 27 2027 2027 HOH HOH B . M 6 HOH 28 2028 2028 HOH HOH B . M 6 HOH 29 2029 2029 HOH HOH B . M 6 HOH 30 2030 2030 HOH HOH B . M 6 HOH 31 2031 2031 HOH HOH B . N 6 HOH 1 2001 2001 HOH HOH C . N 6 HOH 2 2002 2002 HOH HOH C . N 6 HOH 3 2003 2003 HOH HOH C . N 6 HOH 4 2004 2004 HOH HOH C . N 6 HOH 5 2005 2005 HOH HOH C . N 6 HOH 6 2006 2006 HOH HOH C . N 6 HOH 7 2007 2007 HOH HOH C . N 6 HOH 8 2008 2008 HOH HOH C . N 6 HOH 9 2009 2009 HOH HOH C . N 6 HOH 10 2010 2010 HOH HOH C . N 6 HOH 11 2011 2011 HOH HOH C . N 6 HOH 12 2012 2012 HOH HOH C . N 6 HOH 13 2013 2013 HOH HOH C . N 6 HOH 14 2014 2014 HOH HOH C . N 6 HOH 15 2015 2015 HOH HOH C . N 6 HOH 16 2016 2016 HOH HOH C . N 6 HOH 17 2017 2017 HOH HOH C . N 6 HOH 18 2018 2018 HOH HOH C . N 6 HOH 19 2019 2019 HOH HOH C . N 6 HOH 20 2020 2020 HOH HOH C . N 6 HOH 21 2021 2021 HOH HOH C . N 6 HOH 22 2022 2022 HOH HOH C . N 6 HOH 23 2023 2023 HOH HOH C . N 6 HOH 24 2024 2024 HOH HOH C . N 6 HOH 25 2025 2025 HOH HOH C . N 6 HOH 26 2026 2026 HOH HOH C . N 6 HOH 27 2027 2027 HOH HOH C . N 6 HOH 28 2028 2028 HOH HOH C . N 6 HOH 29 2029 2029 HOH HOH C . N 6 HOH 30 2030 2030 HOH HOH C . N 6 HOH 31 2031 2031 HOH HOH C . N 6 HOH 32 2032 2032 HOH HOH C . N 6 HOH 33 2033 2033 HOH HOH C . N 6 HOH 34 2034 2034 HOH HOH C . N 6 HOH 35 2035 2035 HOH HOH C . N 6 HOH 36 2036 2036 HOH HOH C . N 6 HOH 37 2037 2037 HOH HOH C . N 6 HOH 38 2038 2038 HOH HOH C . N 6 HOH 39 2039 2039 HOH HOH C . N 6 HOH 40 2040 2040 HOH HOH C . N 6 HOH 41 2041 2041 HOH HOH C . N 6 HOH 42 2042 2042 HOH HOH C . N 6 HOH 43 2043 2043 HOH HOH C . N 6 HOH 44 2044 2044 HOH HOH C . N 6 HOH 45 2045 2045 HOH HOH C . N 6 HOH 46 2046 2046 HOH HOH C . N 6 HOH 47 2047 2047 HOH HOH C . N 6 HOH 48 2048 2048 HOH HOH C . N 6 HOH 49 2049 2049 HOH HOH C . N 6 HOH 50 2050 2050 HOH HOH C . N 6 HOH 51 2051 2051 HOH HOH C . N 6 HOH 52 2052 2052 HOH HOH C . N 6 HOH 53 2053 2053 HOH HOH C . N 6 HOH 54 2054 2054 HOH HOH C . N 6 HOH 55 2055 2055 HOH HOH C . N 6 HOH 56 2056 2056 HOH HOH C . N 6 HOH 57 2057 2057 HOH HOH C . N 6 HOH 58 2058 2058 HOH HOH C . N 6 HOH 59 2059 2059 HOH HOH C . N 6 HOH 60 2060 2060 HOH HOH C . N 6 HOH 61 2061 2061 HOH HOH C . N 6 HOH 62 2062 2062 HOH HOH C . N 6 HOH 63 2063 2063 HOH HOH C . N 6 HOH 64 2064 2064 HOH HOH C . N 6 HOH 65 2065 2065 HOH HOH C . N 6 HOH 66 2066 2066 HOH HOH C . N 6 HOH 67 2067 2067 HOH HOH C . N 6 HOH 68 2068 2068 HOH HOH C . N 6 HOH 69 2069 2069 HOH HOH C . N 6 HOH 70 2070 2070 HOH HOH C . N 6 HOH 71 2071 2071 HOH HOH C . N 6 HOH 72 2072 2072 HOH HOH C . N 6 HOH 73 2073 2073 HOH HOH C . N 6 HOH 74 2074 2074 HOH HOH C . N 6 HOH 75 2075 2075 HOH HOH C . N 6 HOH 76 2076 2076 HOH HOH C . N 6 HOH 77 2077 2077 HOH HOH C . N 6 HOH 78 2078 2078 HOH HOH C . N 6 HOH 79 2079 2079 HOH HOH C . N 6 HOH 80 2080 2080 HOH HOH C . N 6 HOH 81 2081 2081 HOH HOH C . N 6 HOH 82 2082 2082 HOH HOH C . O 6 HOH 1 2001 2001 HOH HOH D . O 6 HOH 2 2002 2002 HOH HOH D . O 6 HOH 3 2003 2003 HOH HOH D . O 6 HOH 4 2004 2004 HOH HOH D . O 6 HOH 5 2005 2005 HOH HOH D . O 6 HOH 6 2006 2006 HOH HOH D . O 6 HOH 7 2007 2007 HOH HOH D . O 6 HOH 8 2008 2008 HOH HOH D . O 6 HOH 9 2009 2009 HOH HOH D . O 6 HOH 10 2010 2010 HOH HOH D . O 6 HOH 11 2011 2011 HOH HOH D . O 6 HOH 12 2012 2012 HOH HOH D . O 6 HOH 13 2013 2013 HOH HOH D . O 6 HOH 14 2014 2014 HOH HOH D . O 6 HOH 15 2015 2015 HOH HOH D . O 6 HOH 16 2016 2016 HOH HOH D . O 6 HOH 17 2017 2017 HOH HOH D . O 6 HOH 18 2018 2018 HOH HOH D . O 6 HOH 19 2019 2019 HOH HOH D . O 6 HOH 20 2020 2020 HOH HOH D . O 6 HOH 21 2021 2021 HOH HOH D . O 6 HOH 22 2022 2022 HOH HOH D . O 6 HOH 23 2023 2023 HOH HOH D . O 6 HOH 24 2024 2024 HOH HOH D . O 6 HOH 25 2025 2025 HOH HOH D . O 6 HOH 26 2026 2026 HOH HOH D . O 6 HOH 27 2027 2027 HOH HOH D . O 6 HOH 28 2028 2028 HOH HOH D . O 6 HOH 29 2029 2029 HOH HOH D . O 6 HOH 30 2030 2030 HOH HOH D . O 6 HOH 31 2031 2031 HOH HOH D . O 6 HOH 32 2032 2032 HOH HOH D . P 6 HOH 1 2001 2001 HOH HOH P . P 6 HOH 2 2002 2002 HOH HOH P . P 6 HOH 3 2003 2003 HOH HOH P . P 6 HOH 4 2004 2004 HOH HOH P . P 6 HOH 5 2005 2005 HOH HOH P . P 6 HOH 6 2006 2006 HOH HOH P . P 6 HOH 7 2007 2007 HOH HOH P . P 6 HOH 8 2008 2008 HOH HOH P . Q 6 HOH 1 2001 2001 HOH HOH R . Q 6 HOH 2 2002 2002 HOH HOH R . Q 6 HOH 3 2003 2003 HOH HOH R . Q 6 HOH 4 2004 2004 HOH HOH R . Q 6 HOH 5 2005 2005 HOH HOH R . Q 6 HOH 6 2006 2006 HOH HOH R . Q 6 HOH 7 2007 2007 HOH HOH R . Q 6 HOH 8 2008 2008 HOH HOH R . Q 6 HOH 9 2009 2009 HOH HOH R . Q 6 HOH 10 2010 2010 HOH HOH R . Q 6 HOH 11 2011 2011 HOH HOH R . Q 6 HOH 12 2012 2012 HOH HOH R . Q 6 HOH 13 2013 2013 HOH HOH R . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 E DA2 2 P DA2 2 ? ARG NG,NG-DIMETHYL-L-ARGININE 2 E MLY 4 P MLY 4 ? LYS N-DIMETHYL-LYSINE 3 F DA2 2 R DA2 2 ? ARG NG,NG-DIMETHYL-L-ARGININE 4 F MLY 4 R MLY 4 ? LYS N-DIMETHYL-LYSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,G,H,I,L,M,P 2 1 C,D,F,J,K,N,O,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2520 ? 1 MORE -20.2 ? 1 'SSA (A^2)' 6460 ? 2 'ABSA (A^2)' 2690 ? 2 MORE -22.6 ? 2 'SSA (A^2)' 6780 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 8 ? A CYS 343 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 ND1 ? A HIS 33 ? A HIS 368 ? 1_555 99.7 ? 2 SG ? A CYS 8 ? A CYS 343 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 SG ? A CYS 11 ? A CYS 346 ? 1_555 109.8 ? 3 ND1 ? A HIS 33 ? A HIS 368 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 SG ? A CYS 11 ? A CYS 346 ? 1_555 101.0 ? 4 SG ? A CYS 8 ? A CYS 343 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 SG ? A CYS 36 ? A CYS 371 ? 1_555 117.2 ? 5 ND1 ? A HIS 33 ? A HIS 368 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 SG ? A CYS 36 ? A CYS 371 ? 1_555 117.8 ? 6 SG ? A CYS 11 ? A CYS 346 ? 1_555 ZN ? H ZN . ? A ZN 1400 ? 1_555 SG ? A CYS 36 ? A CYS 371 ? 1_555 110.0 ? 7 SG ? A CYS 24 ? A CYS 359 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 57 ? A CYS 392 ? 1_555 116.6 ? 8 SG ? A CYS 24 ? A CYS 359 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 60 ? A CYS 395 ? 1_555 110.2 ? 9 SG ? A CYS 57 ? A CYS 392 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 60 ? A CYS 395 ? 1_555 99.2 ? 10 SG ? A CYS 24 ? A CYS 359 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 28 ? A CYS 363 ? 1_555 109.8 ? 11 SG ? A CYS 57 ? A CYS 392 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 28 ? A CYS 363 ? 1_555 114.8 ? 12 SG ? A CYS 60 ? A CYS 395 ? 1_555 ZN ? I ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 28 ? A CYS 363 ? 1_555 105.0 ? 13 SG ? C CYS 11 ? C CYS 346 ? 1_555 ZN ? J ZN . ? C ZN 1399 ? 1_555 ND1 ? C HIS 33 ? C HIS 368 ? 1_555 101.2 ? 14 SG ? C CYS 11 ? C CYS 346 ? 1_555 ZN ? J ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 36 ? C CYS 371 ? 1_555 111.3 ? 15 ND1 ? C HIS 33 ? C HIS 368 ? 1_555 ZN ? J ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 36 ? C CYS 371 ? 1_555 116.5 ? 16 SG ? C CYS 11 ? C CYS 346 ? 1_555 ZN ? J ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 8 ? C CYS 343 ? 1_555 109.8 ? 17 ND1 ? C HIS 33 ? C HIS 368 ? 1_555 ZN ? J ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 8 ? C CYS 343 ? 1_555 99.8 ? 18 SG ? C CYS 36 ? C CYS 371 ? 1_555 ZN ? J ZN . ? C ZN 1399 ? 1_555 SG ? C CYS 8 ? C CYS 343 ? 1_555 116.8 ? 19 SG ? C CYS 57 ? C CYS 392 ? 1_555 ZN ? K ZN . ? C ZN 1400 ? 1_555 SG ? C CYS 60 ? C CYS 395 ? 1_555 96.7 ? 20 SG ? C CYS 57 ? C CYS 392 ? 1_555 ZN ? K ZN . ? C ZN 1400 ? 1_555 SG ? C CYS 24 ? C CYS 359 ? 1_555 116.3 ? 21 SG ? C CYS 60 ? C CYS 395 ? 1_555 ZN ? K ZN . ? C ZN 1400 ? 1_555 SG ? C CYS 24 ? C CYS 359 ? 1_555 113.0 ? 22 SG ? C CYS 57 ? C CYS 392 ? 1_555 ZN ? K ZN . ? C ZN 1400 ? 1_555 SG ? C CYS 28 ? C CYS 363 ? 1_555 114.3 ? 23 SG ? C CYS 60 ? C CYS 395 ? 1_555 ZN ? K ZN . ? C ZN 1400 ? 1_555 SG ? C CYS 28 ? C CYS 363 ? 1_555 107.7 ? 24 SG ? C CYS 24 ? C CYS 359 ? 1_555 ZN ? K ZN . ? C ZN 1400 ? 1_555 SG ? C CYS 28 ? C CYS 363 ? 1_555 108.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-17 2 'Structure model' 1 1 2013-11-06 3 'Structure model' 2 0 2019-05-08 4 'Structure model' 2 1 2019-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Non-polymer description' 4 2 'Structure model' Other 5 2 'Structure model' 'Source and taxonomy' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Derived calculations' 9 3 'Structure model' 'Experimental preparation' 10 3 'Structure model' Other 11 3 'Structure model' 'Polymer sequence' 12 4 'Structure model' 'Data collection' 13 4 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_poly 2 3 'Structure model' exptl_crystal_grow 3 3 'Structure model' pdbx_database_proc 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_seq_map_depositor_info 6 3 'Structure model' struct_conn 7 4 'Structure model' exptl_crystal_grow 8 4 'Structure model' struct_biol # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 2 3 'Structure model' '_exptl_crystal_grow.temp' 3 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 4 3 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_exptl_crystal_grow.method' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.3.0037 ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 347 ? ? 71.21 -4.47 2 1 SER A 362 ? ? -152.11 -70.98 3 1 ILE C 345 ? ? -101.42 -63.17 4 1 THR C 347 ? ? 70.97 -2.83 5 1 SER C 362 ? ? -155.14 -67.13 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id D _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2010 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.83 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 336 ? A GLY 1 2 1 Y 1 A ALA 337 ? A ALA 2 3 1 Y 1 B HIS 204 ? B HIS 31 4 1 Y 1 B ILE 205 ? B ILE 32 5 1 Y 1 D HIS 204 ? D HIS 31 6 1 Y 1 D ILE 205 ? D ILE 32 7 1 Y 1 P ARG 8 ? E ARG 8 8 1 Y 1 P LYS 9 ? E LYS 9 9 1 Y 1 P SER 10 ? E SER 10 10 1 Y 1 P THR 11 ? E THR 11 11 1 Y 1 P GLY 12 ? E GLY 12 12 1 Y 1 P GLY 13 ? E GLY 13 13 1 Y 1 P LYS 14 ? E LYS 14 14 1 Y 1 P ALA 15 ? E ALA 15 15 1 Y 1 P PRO 16 ? E PRO 16 16 1 Y 1 P ARG 17 ? E ARG 17 17 1 Y 1 P LYS 18 ? E LYS 18 18 1 Y 1 R ARG 8 ? F ARG 8 19 1 Y 1 R LYS 9 ? F LYS 9 20 1 Y 1 R SER 10 ? F SER 10 21 1 Y 1 R THR 11 ? F THR 11 22 1 Y 1 R GLY 12 ? F GLY 12 23 1 Y 1 R GLY 13 ? F GLY 13 24 1 Y 1 R LYS 14 ? F LYS 14 25 1 Y 1 R ALA 15 ? F ALA 15 26 1 Y 1 R PRO 16 ? F PRO 16 27 1 Y 1 R ARG 17 ? F ARG 17 28 1 Y 1 R LYS 18 ? F LYS 18 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 'ZINC ION' ZN 6 water HOH #