HEADER TRANSCRIPTION 03-MAR-08 2VPR TITLE TET REPRESSOR CLASS H IN COMPLEX WITH 5A,6- ANHYDROTETRACYCLINE-MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE RESISTANCE REPRESSOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TETRACYCLINE REPRESSOR CLASS H; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PASTEURELLA MULTOCIDA; SOURCE 3 ORGANISM_TAXID: 747; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: RB791; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PWH1590 KEYWDS TRANSCRIPTION, METAL-BINDING, ANTIBIOTIC RESISTANCE, TRANSCRIPTION KEYWDS 2 REGULATOR, TRANSCRIPTION REGULATION DNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.SCHULDT,G.PALM,W.HINRICHS REVDAT 7 13-DEC-23 2VPR 1 LINK REVDAT 6 24-JUL-19 2VPR 1 REMARK REVDAT 5 13-JUL-11 2VPR 1 VERSN REVDAT 4 24-FEB-09 2VPR 1 VERSN REVDAT 3 29-APR-08 2VPR 1 JRNL REVDAT 2 01-APR-08 2VPR 1 HETATM CONECT REVDAT 1 11-MAR-08 2VPR 0 JRNL AUTH A.ALEKSANDROV,L.SCHULDT,W.HINRICHS,T.SIMONSON JRNL TITL TET REPRESSOR INDUCTION BY TETRACYCLINE: A MOLECULAR JRNL TITL 2 DYNAMICS, CONTINUUM ELECTROSTATICS, AND CRYSTALLOGRAPHIC JRNL TITL 3 STUDY JRNL REF J.MOL.BIOL. V. 378 896 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18395746 JRNL DOI 10.1016/J.JMB.2008.03.022 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.ORTH,D.SCHNAPPINGER,W.HILLEN,W.SAENGER,W.HINRICHS REMARK 1 TITL STRUCTURAL BASIS OF GENE REGULATION BY THE TETRACYCLINE REMARK 1 TITL 2 INDUCIBLE TET REPRESSOR-OPERATOR SYSTEM REMARK 1 REF NAT.STRUCT.BIOL. V. 7 215 2000 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 10700280 REMARK 1 DOI 10.1038/73324 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.HINRICHS,C.KISKER,M.DUEVEL,A.MUELLER,K.TOVAR,W.HILLEN, REMARK 1 AUTH 2 W.SAENGER REMARK 1 TITL STRUCTURE OF THE TET REPRESSOR - TETRACYCLINE COMPLEX AND REMARK 1 TITL 2 REGULATION OF ANTIBIOTIC RESISTANCE REMARK 1 REF SCIENCE V. 264 418 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 8153629 REMARK 1 DOI 10.1126/SCIENCE.8153629 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 6898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 741 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 497 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 53.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.33000 REMARK 3 B22 (A**2) : -2.81000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.938 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.494 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1613 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1053 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2193 ; 1.576 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2587 ; 1.003 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 195 ; 6.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;41.711 ;25.342 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;21.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.048 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 250 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1774 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 451 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1064 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 804 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 789 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 54 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.365 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.213 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1064 ; 0.690 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1571 ; 1.044 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 720 ; 1.509 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 622 ; 2.330 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): -18.6961 39.2868 25.9809 REMARK 3 T TENSOR REMARK 3 T11: -0.0579 T22: 0.0191 REMARK 3 T33: 0.0927 T12: -0.0754 REMARK 3 T13: -0.0515 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 4.3612 L22: 12.9981 REMARK 3 L33: 3.7324 L12: 0.4487 REMARK 3 L13: -0.9231 L23: 0.4349 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: 0.0344 S13: -0.0753 REMARK 3 S21: -0.0849 S22: -0.0215 S23: 1.2343 REMARK 3 S31: 0.2594 S32: -0.4248 S33: 0.0681 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 157 REMARK 3 RESIDUE RANGE : A 182 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2550 45.8028 29.7840 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.0279 REMARK 3 T33: -0.0263 T12: 0.0324 REMARK 3 T13: -0.0244 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.6385 L22: 1.5567 REMARK 3 L33: 1.4110 L12: 0.3767 REMARK 3 L13: -0.1382 L23: 1.0441 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: -0.0264 S13: -0.1227 REMARK 3 S21: 0.0951 S22: 0.1435 S23: -0.0962 REMARK 3 S31: 0.1555 S32: 0.1491 S33: -0.1213 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5939 71.7840 25.4414 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: -0.0403 REMARK 3 T33: -0.0430 T12: -0.0529 REMARK 3 T13: 0.1032 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 5.5334 L22: 17.0220 REMARK 3 L33: 1.8549 L12: 1.0590 REMARK 3 L13: 0.4180 L23: -0.5424 REMARK 3 S TENSOR REMARK 3 S11: -0.4707 S12: 0.6697 S13: 0.3554 REMARK 3 S21: 0.3650 S22: 0.7474 S23: 1.1323 REMARK 3 S31: -0.5587 S32: 0.5378 S33: -0.2767 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1206 A 1206 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0813 41.3069 33.5896 REMARK 3 T TENSOR REMARK 3 T11: -0.0401 T22: 0.2939 REMARK 3 T33: 0.2105 T12: 0.0300 REMARK 3 T13: -0.1315 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.2719 L22: 2.2803 REMARK 3 L33: 0.3039 L12: -0.3324 REMARK 3 L13: 0.1298 L23: -0.8324 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: -0.5302 S13: -1.2001 REMARK 3 S21: -0.3602 S22: -0.1732 S23: 0.4638 REMARK 3 S31: -1.0886 S32: 0.0294 S33: 0.2300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1290034737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8084 REMARK 200 MONOCHROMATOR : SI (111), HORIZONTALLY FOCUSSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2TCT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.31 MG/ML TETR(H), 100 UL 2 MM REMARK 280 ANTC,100 UL TETR(H),0.5 UL 3 M MGCL2, 20 % PEG1500, 0.1 M REMARK 280 NAHEPES PH 7.5, 2 UL RESERVOIR LSG PLUS 2 UL PROTEIN REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.48800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.48800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.18050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.37200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.18050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.37200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.48800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.18050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.37200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.48800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.18050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.37200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 108.74400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.97600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 158 REMARK 465 GLU A 159 REMARK 465 LYS A 160 REMARK 465 VAL A 161 REMARK 465 GLU A 162 REMARK 465 THR A 163 REMARK 465 ASP A 164 REMARK 465 THR A 164A REMARK 465 VAL A 164B REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 92 CE MET A 92 3555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 -55.64 -162.69 REMARK 500 HIS A 66 58.56 -90.35 REMARK 500 PRO A 71 -39.37 -39.21 REMARK 500 GLN A 155 77.59 -104.24 REMARK 500 SER A 203 33.57 -75.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 203 ALA A 204 144.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 TDC A1206 O11 167.0 REMARK 620 3 TDC A1206 O12 90.2 76.8 REMARK 620 4 HOH A2015 O 98.3 83.3 99.3 REMARK 620 5 HOH A2016 O 87.9 91.2 83.0 173.4 REMARK 620 6 HOH A2017 O 104.4 88.4 160.8 90.9 85.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDC A1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1208 DBREF 2VPR A 1 205 UNP Q799E2 Q799E2_PASMU 1 207 SEQRES 1 A 207 MET ALA LYS LEU ASP LYS GLU GLN VAL ILE ASP ASN ALA SEQRES 2 A 207 LEU ILE LEU LEU ASN GLU VAL GLY ILE GLU GLY LEU THR SEQRES 3 A 207 THR ARG LYS LEU ALA GLN LYS ILE GLY VAL GLU GLN PRO SEQRES 4 A 207 THR LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU SEQRES 5 A 207 ASP ALA LEU ALA GLU THR ILE LEU GLN LYS HIS HIS HIS SEQRES 6 A 207 HIS VAL LEU PRO LEU PRO ASN GLU THR TRP GLN ASP PHE SEQRES 7 A 207 LEU ARG ASN ASN ALA LYS SER PHE ARG GLN ALA LEU LEU SEQRES 8 A 207 MET TYR ARG ASP GLY GLY LYS ILE HIS ALA GLY THR ARG SEQRES 9 A 207 PRO SER GLU SER GLN PHE GLU THR SER GLU GLN GLN LEU SEQRES 10 A 207 GLN PHE LEU CYS ASP ALA GLY PHE SER LEU SER GLN ALA SEQRES 11 A 207 VAL TYR ALA LEU SER SER ILE ALA HIS PHE THR LEU GLY SEQRES 12 A 207 SER VAL LEU GLU THR GLN GLU HIS GLN GLU SER GLN LYS SEQRES 13 A 207 GLU ARG GLU LYS VAL GLU THR ASP THR VAL ALA TYR PRO SEQRES 14 A 207 PRO LEU LEU THR GLN ALA VAL ALA ILE MET ASP SER ASP SEQRES 15 A 207 ASN GLY ASP ALA ALA PHE LEU PHE VAL LEU ASP VAL MET SEQRES 16 A 207 ILE SER GLY LEU GLU THR VAL LEU LYS SER ALA LYS HET TDC A1206 31 HET MG A1207 1 HET SO4 A1208 5 HETNAM TDC 5A,6-ANHYDROTETRACYCLINE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 2 TDC C22 H22 N2 O7 FORMUL 3 MG MG 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *18(H2 O) HELIX 1 1 ASP A 5 LEU A 25 1 21 HELIX 2 2 THR A 26 GLY A 35 1 10 HELIX 3 3 GLU A 37 TYR A 42 1 6 HELIX 4 4 ASN A 47 HIS A 64 1 18 HELIX 5 5 THR A 74 TYR A 93 1 20 HELIX 6 6 ASP A 95 ALA A 101 1 7 HELIX 7 7 SER A 106 SER A 108 5 3 HELIX 8 8 GLN A 109 GLY A 124 1 16 HELIX 9 9 SER A 126 SER A 154 1 29 HELIX 10 10 PRO A 167 ASP A 180 1 14 HELIX 11 11 GLY A 182 SER A 203 1 22 LINK NE2 HIS A 100 MG MG A1207 1555 1555 2.03 LINK O11 TDC A1206 MG MG A1207 1555 1555 2.12 LINK O12 TDC A1206 MG MG A1207 1555 1555 2.04 LINK MG MG A1207 O HOH A2015 1555 1555 1.97 LINK MG MG A1207 O HOH A2016 1555 1555 1.98 LINK MG MG A1207 O HOH A2017 1555 1555 1.95 SITE 1 AC1 14 HIS A 64 ASN A 82 PHE A 86 HIS A 100 SITE 2 AC1 14 THR A 103 ARG A 104 GLN A 116 LEU A 134 SITE 3 AC1 14 ALA A 173 MG A1207 HOH A2010 HOH A2015 SITE 4 AC1 14 HOH A2016 HOH A2017 SITE 1 AC2 5 HIS A 100 TDC A1206 HOH A2015 HOH A2016 SITE 2 AC2 5 HOH A2017 SITE 1 AC3 3 GLN A 88 LEU A 91 MET A 92 CRYST1 56.361 108.744 68.976 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014498 0.00000