HEADER HYDROLASE 04-MAR-08 2VPT TITLE CLOSTRIDIUM THERMOCELLUM FAMILY 3 CARBOHYDRATE ESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOLYTIC ENZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 32-237; COMPND 5 SYNONYM: FAMILY 3 CARBOHYDRATE ESTERASE; COMPND 6 EC: 3.1.1.72; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 ATCC: 27405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.S.CORREIA,J.A.M.PRATES,J.BRAS,C.M.G.A.FONTES,J.A.NEWMAN, AUTHOR 2 R.J.LEWIS,H.J.GILBERT,J.E.FLINT REVDAT 3 18-JAN-12 2VPT 1 REMARK VERSN FORMUL MASTER REVDAT 2 15-JAN-09 2VPT 1 VERSN REVDAT 1 06-MAY-08 2VPT 0 JRNL AUTH M.A.S.CORREIA,J.A.M.PRATES,J.BRAS,C.M.G.A.FONTES, JRNL AUTH 2 J.A.NEWMAN,R.J.LEWIS,H.J.GILBERT,J.E.FLINT JRNL TITL CRYSTAL STRUCTURE OF A CELLULOSOMAL FAMILY 3 JRNL TITL 2 CARBOHYDRATE ESTERASE FROM CLOSTRIDIUM JRNL TITL 3 THERMOCELLUM PROVIDES INSIGHTS INTO THE MECHANISM JRNL TITL 4 OF SUBSTRATE RECOGNITION JRNL REF J.MOL.BIOL. V. 379 64 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18436237 JRNL DOI 10.1016/J.JMB.2008.03.037 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.98 REMARK 3 NUMBER OF REFLECTIONS : 44228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.15468 REMARK 3 R VALUE (WORKING SET) : 0.15353 REMARK 3 FREE R VALUE : 0.17579 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.400 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.436 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.161 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.199 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.995 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23 REMARK 3 B22 (A**2) : 0.23 REMARK 3 B33 (A**2) : -0.34 REMARK 3 B12 (A**2) : 0.11 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.546 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1668 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1119 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2278 ; 1.399 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2742 ; 0.950 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ;13.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;34.816 ;24.533 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 281 ;12.699 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.697 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 250 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1878 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 336 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 335 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1200 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 835 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 807 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 180 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.106 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1062 ; 1.240 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1655 ; 1.646 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 727 ; 2.537 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 618 ; 3.228 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-08. REMARK 100 THE PDBE ID CODE IS EBI-35536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.40 REMARK 200 RESOLUTION RANGE LOW (A) : 47.50 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.9 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.6 REMARK 200 R MERGE FOR SHELL (I) : 0.42 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG 400, 0.1 M HEPES-NAOH, REMARK 280 PH 7.5, AND 2.0 M AMMONIUM SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.53333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.53333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.26667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 22.26644 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 GLU A 235 REMARK 465 THR A 236 REMARK 465 GLN A 237 REMARK 465 LEU A 238 REMARK 465 GLU A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2A ARG A 79 O HOH A 2065 2.00 REMARK 500 O HOH A 2007 O HOH A 2008 2.15 REMARK 500 O HOH A 2014 O HOH A 2222 2.10 REMARK 500 O HOH A 2060 O HOH A 2087 2.18 REMARK 500 O HOH A 2137 O HOH A 2168 2.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2011 O HOH A 2011 6555 0.72 REMARK 500 O HOH A 2125 O HOH A 2125 6554 0.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 39 SE MSE A 39 CE -0.772 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -147.22 -109.82 REMARK 500 SER A 56 -146.77 53.45 REMARK 500 LEU A 132 82.86 -41.74 REMARK 500 ASN A 133 59.31 -92.58 REMARK 500 LEU A 207 -51.79 -132.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 131 LEU A 132 124.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 131 46.0 L L OUTSIDE RANGE REMARK 500 LEU A 132 24.6 L L OUTSIDE RANGE REMARK 500 LEU A 132 23.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1235 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 OD1 REMARK 620 2 ASP A 87 OD2 78.5 REMARK 620 3 ASP A 89 OD2 154.3 127.1 REMARK 620 4 HOH A2082 O 98.8 84.5 87.6 REMARK 620 5 PHE A 74 O 82.8 90.6 93.3 174.4 REMARK 620 6 ASP A 87 OD1 129.5 52.8 75.0 89.5 85.3 REMARK 620 7 HOH A2088 O 82.2 159.6 72.7 92.1 93.5 147.6 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1235 DBREF 2VPT A 31 31 PDB 2VPT 2VPT 31 31 DBREF 2VPT A 32 237 UNP A3DDK4 A3DDK4_CLOTH 32 237 SEQRES 1 A 215 MSE ALA SER LYS THR ILE LYS ILE MSE PRO VAL GLY ASP SEQRES 2 A 215 SER CYS THR GLU GLY MSE GLY GLY GLY GLU MSE GLY SER SEQRES 3 A 215 TYR ARG THR GLU LEU TYR ARG LEU LEU THR GLN ALA GLY SEQRES 4 A 215 LEU SER ILE ASP PHE VAL GLY SER GLN ARG SER GLY PRO SEQRES 5 A 215 SER SER LEU PRO ASP LYS ASP HIS GLU GLY HIS SER GLY SEQRES 6 A 215 TRP THR ILE PRO GLN ILE ALA SER ASN ILE ASN ASN TRP SEQRES 7 A 215 LEU ASN THR HIS ASN PRO ASP VAL VAL PHE LEU TRP ILE SEQRES 8 A 215 GLY GLY ASN ASP LEU LEU LEU ASN GLY ASN LEU ASN ALA SEQRES 9 A 215 THR GLY LEU SER ASN LEU ILE ASP GLN ILE PHE THR VAL SEQRES 10 A 215 LYS PRO ASN VAL THR LEU PHE VAL ALA ASP TYR TYR PRO SEQRES 11 A 215 TRP PRO GLU ALA ILE LYS GLN TYR ASN ALA VAL ILE PRO SEQRES 12 A 215 GLY ILE VAL GLN GLN LYS ALA ASN ALA GLY LYS LYS VAL SEQRES 13 A 215 TYR PHE VAL LYS LEU SER GLU ILE GLN PHE ASP ARG ASN SEQRES 14 A 215 THR ASP ILE SER TRP ASP GLY LEU HIS LEU SER GLU ILE SEQRES 15 A 215 GLY TYR LYS LYS ILE ALA ASN ILE TRP TYR LYS TYR THR SEQRES 16 A 215 ILE ASP ILE LEU ARG ALA LEU ALA GLY GLU THR GLN LEU SEQRES 17 A 215 GLU HIS HIS HIS HIS HIS HIS MODRES 2VPT MSE A 39 MET SELENOMETHIONINE MODRES 2VPT MSE A 49 MET SELENOMETHIONINE MODRES 2VPT MSE A 54 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 49 8 HET MSE A 54 8 HET CA A1235 1 HETNAM CA CALCIUM ION HETNAM MSE SELENOMETHIONINE FORMUL 2 CA CA 2+ FORMUL 3 MSE 3(C5 H11 N O2 SE) FORMUL 4 HOH *247(H2 O) HELIX 1 1 ASP A 43 GLY A 48 1 6 HELIX 2 2 TYR A 57 ALA A 68 1 12 HELIX 3 3 THR A 97 ASN A 113 1 17 HELIX 4 4 GLY A 122 GLY A 130 1 9 HELIX 5 5 ASN A 133 LYS A 148 1 16 HELIX 6 6 PRO A 162 ALA A 164 5 3 HELIX 7 7 ILE A 165 ALA A 170 1 6 HELIX 8 8 VAL A 171 ALA A 182 1 12 HELIX 9 9 LYS A 190 ILE A 194 5 5 HELIX 10 10 ASP A 197 ILE A 202 1 6 HELIX 11 11 SER A 210 GLY A 234 1 25 SHEET 1 AA 5 SER A 71 PHE A 74 0 SHEET 2 AA 5 THR A 35 GLY A 42 1 O ILE A 36 N ASP A 73 SHEET 3 AA 5 VAL A 116 TRP A 120 1 O VAL A 116 N MSE A 39 SHEET 4 AA 5 THR A 152 ALA A 156 1 O THR A 152 N VAL A 117 SHEET 5 AA 5 VAL A 186 VAL A 189 1 O TYR A 187 N VAL A 155 SHEET 1 AB 4 SER A 71 PHE A 74 0 SHEET 2 AB 4 THR A 35 GLY A 42 1 O ILE A 36 N ASP A 73 SHEET 3 AB 4 ASP A 89 GLY A 92 1 O GLU A 91 N GLY A 42 SHEET 4 AB 4 GLN A 78 ARG A 79 -1 O GLN A 78 N HIS A 90 LINK C ILE A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N PRO A 40 1555 1555 1.34 LINK C GLY A 48 N MSE A 49 1555 1555 1.33 LINK C MSE A 49 N GLY A 50 1555 1555 1.33 LINK C GLU A 53 N MSE A 54 1555 1555 1.33 LINK C MSE A 54 N GLY A 55 1555 1555 1.33 LINK CA CA A1235 O HOH A2088 1555 1555 2.40 LINK CA CA A1235 OD1 ASP A 87 1555 1555 2.48 LINK CA CA A1235 O PHE A 74 1555 1555 2.28 LINK CA CA A1235 O HOH A2082 1555 1555 2.32 LINK CA CA A1235 OD2 ASP A 89 1555 1555 2.38 LINK CA CA A1235 OD2 ASP A 87 1555 1555 2.50 LINK CA CA A1235 OD1 ASP A 73 1555 1555 2.35 CISPEP 1 TRP A 161 PRO A 162 0 -5.95 SITE 1 AC1 6 ASP A 73 PHE A 74 ASP A 87 ASP A 89 SITE 2 AC1 6 HOH A2082 HOH A2088 CRYST1 77.977 77.977 66.800 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012824 0.007404 0.000000 0.00000 SCALE2 0.000000 0.014808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014970 0.00000