HEADER HYDROLASE 05-MAR-08 2VPU OBSLTE 03-NOV-10 2VPU 2WZN TITLE 3D STRUCTURE OF TET3 FROM PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 354AA LONG HYPOTHETICAL OPERON PROTEIN FRV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TET3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21RIL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS UNKNOWN FUNCTION, PROTEASE, THERMOPHILIC, KEYWDS 2 SELF-COMPARTMENTALISING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.DURA,E.ROSENBAUM,A.LARABI,F.GABEL,F.M.VELLIEUX, AUTHOR 2 B.FRANZETTI REVDAT 3 03-NOV-10 2VPU 1 OBSLTE REVDAT 2 14-APR-09 2VPU 1 JRNL REVDAT 1 31-MAR-09 2VPU 0 JRNL AUTH M.A.DURA,E.ROSENBAUM,A.LARABI,F.GABEL,F.M.VELLIEUX, JRNL AUTH 2 B.FRANZETTI JRNL TITL THE STRUCTURAL AND BIOCHEMICAL CHARACTERIZATIONS JRNL TITL 2 OF A NOVEL TET PEPTIDASE COMPLEX FROM PYROCOCCUS JRNL TITL 3 HORIKOSHII REVEAL AN INTEGRATED PEPTIDE JRNL TITL 4 DEGRADATION SYSTEM IN HYPERTHERMOPHILIC ARCHAEA. JRNL REF MOL.MICROBIOL. V. 72 26 2009 JRNL REFN ISSN 0950-382X JRNL PMID 19291145 JRNL DOI 10.1111/J.1365-2958.2009.06600.X REMARK 2 REMARK 2 RESOLUTION. 1.9 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, REMARK 3 GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, REMARK 3 PANNU,READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 OUTLIER CUTOFF HIGH (RMS(ABS(F))) : 5631892.07 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1519 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4765 REMARK 3 BIN R VALUE (WORKING SET) : 0.226 REMARK 3 BIN FREE R VALUE : 0.250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 BIN FREE R VALUE SET COUNT : 251 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14 REMARK 3 B22 (A**2) : 1.14 REMARK 3 B33 (A**2) : -2.29 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.4 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.5 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.13 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.223 ; 1.5 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.84 ; 2.0 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.165 ; 2.0 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.232 ; 2.5 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.366401 REMARK 3 BSOL : 59.6002 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 2 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 3 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 3 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 4 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 4 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 PARAMETER FILE 4 : GLYC.PARAM REMARK 3 TOPOLOGY FILE 4 : GLYC.TOPOLOGY REMARK 3 PARAMETER FILE 5 : CIS_PEPTIDE.PARAM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE INITIAL 8 N-TERMINAL RESIDUES CANNOT REMARK 3 BE SEEN IN THE ELECTRON DENSITY MAPS. RESIDUES 128-136 CANNOT REMARK 3 BE SEEN IN THE ELECTRON DENSITY MAPS. REMARK 4 REMARK 4 2VPU COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-08. REMARK 100 THE PDBE ID CODE IS EBI-35052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 433624 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 33.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.5 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.1 REMARK 200 R MERGE FOR SHELL (I) : 0.38 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Y0Y REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULPHATE, 0.085 REMARK 280 M TRIS HCL PH 8.5, 21.25% (W/V) PEG 3300, 2.0 MICROL REMARK 280 DROPLETS TO WHICH 0.5 MICROL OF 30% GAMMA-BUTYROLACTONE IS REMARK 280 ADDED REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 66.12050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 61570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 151050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -392.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 9 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 10 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2095 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2186 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 ARG A 128 REMARK 465 GLY A 129 REMARK 465 GLN A 130 REMARK 465 GLU A 131 REMARK 465 ASP A 132 REMARK 465 LYS A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 465 LYS A 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 202 OD1 OD2 REMARK 470 LYS A 348 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; REMARK 480 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 480 I=INSERTION CODE): REMARK 480 M RES CSSEQI ATOMS REMARK 480 ASP A 202 OD1 OD2 REMARK 480 LYS A 348 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 138 - N ASP A 140 1.78 REMARK 500 NH2 ARG A 198 - O HOH A 2168 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 62 -73.51 -94.77 REMARK 500 PRO A 123 -136.93 -50.36 REMARK 500 PRO A 124 -63.29 -101.29 REMARK 500 TRP A 139 -19.85 -48.46 REMARK 500 ASN A 170 83.42 -168.11 REMARK 500 ASN A 175 -158.12 -155.86 REMARK 500 LYS A 306 -119.64 45.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 10 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 185 OD2 REMARK 620 2 GLU A 216 OE1 153.9 REMARK 620 3 GLU A 216 OE2 98.1 55.8 REMARK 620 4 HIS A 322 NE2 94.8 93.9 111.6 REMARK 620 5 CL A 405 CL 99.2 87.4 97.8 145.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL A 405 CL REMARK 620 2 HIS A 71 NE2 107.4 REMARK 620 3 ASP A 185 OD1 115.4 99.1 REMARK 620 4 ASP A 238 OD1 121.5 110.6 100.7 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406 DBREF 2VPU A 1 354 UNP O59485 O59485_PYRHO 1 354 SEQADV 2VPU LYS A 306 UNP O59485 ARG 306 CONFLICT SEQRES 1 A 354 MET ASP LEU LYS GLY GLY GLU SER MET VAL ASP TRP LYS SEQRES 2 A 354 LEU MET GLN GLU ILE ILE GLU ALA PRO GLY VAL SER GLY SEQRES 3 A 354 TYR GLU HIS LEU GLY ILE ARG ASP ILE VAL VAL ASP VAL SEQRES 4 A 354 LEU LYS GLU VAL ALA ASP GLU VAL LYS VAL ASP LYS LEU SEQRES 5 A 354 GLY ASN VAL ILE ALA HIS PHE LYS GLY SER SER PRO ARG SEQRES 6 A 354 ILE MET VAL ALA ALA HIS MET ASP LYS ILE GLY VAL MET SEQRES 7 A 354 VAL ASN HIS ILE ASP LYS ASP GLY TYR LEU HIS ILE VAL SEQRES 8 A 354 PRO ILE GLY GLY VAL LEU PRO GLU THR LEU VAL ALA GLN SEQRES 9 A 354 ARG ILE ARG PHE PHE THR GLU LYS GLY GLU ARG TYR GLY SEQRES 10 A 354 VAL VAL GLY VAL LEU PRO PRO HIS LEU ARG ARG GLY GLN SEQRES 11 A 354 GLU ASP LYS GLY SER LYS ILE ASP TRP ASP GLN ILE VAL SEQRES 12 A 354 VAL ASP VAL GLY ALA SER SER LYS GLU GLU ALA GLU GLU SEQRES 13 A 354 MET GLY PHE ARG VAL GLY THR VAL GLY GLU PHE ALA PRO SEQRES 14 A 354 ASN PHE THR ARG LEU ASN GLU HIS ARG PHE ALA THR PRO SEQRES 15 A 354 TYR LEU ASP ASP ARG ILE CYS LEU TYR ALA MET ILE GLU SEQRES 16 A 354 ALA ALA ARG GLN LEU GLY ASP HIS GLU ALA ASP ILE TYR SEQRES 17 A 354 ILE VAL GLY SER VAL GLN GLU GLU VAL GLY LEU ARG GLY SEQRES 18 A 354 ALA ARG VAL ALA SER TYR ALA ILE ASN PRO GLU VAL GLY SEQRES 19 A 354 ILE ALA MET ASP VAL THR PHE ALA LYS GLN PRO HIS ASP SEQRES 20 A 354 LYS GLY LYS ILE VAL PRO GLU LEU GLY LYS GLY PRO VAL SEQRES 21 A 354 MET ASP VAL GLY PRO ASN ILE ASN PRO LYS LEU ARG ALA SEQRES 22 A 354 PHE ALA ASP GLU VAL ALA LYS LYS TYR GLU ILE PRO LEU SEQRES 23 A 354 GLN VAL GLU PRO SER PRO ARG PRO THR GLY THR ASP ALA SEQRES 24 A 354 ASN VAL MET GLN ILE ASN LYS GLU GLY VAL ALA THR ALA SEQRES 25 A 354 VAL LEU SER ILE PRO ILE ARG TYR MET HIS SER GLN VAL SEQRES 26 A 354 GLU LEU ALA ASP ALA ARG ASP VAL ASP ASN THR ILE LYS SEQRES 27 A 354 LEU ALA LYS ALA LEU LEU GLU GLU LEU LYS PRO MET ASP SEQRES 28 A 354 PHE THR PRO HET GOL A 360 6 HET GOL A 361 6 HET ZN A 401 1 HET ZN A 402 1 HET CL A 405 1 HET CL A 406 1 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 2 GOL 2(C3 H8 O3) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL 2(CL 1-) FORMUL 5 HOH *273(H2 O1) HELIX 1 1 ASP A 11 ALA A 21 1 11 HELIX 2 2 TYR A 27 LEU A 30 5 4 HELIX 3 3 GLY A 31 GLU A 42 1 12 HELIX 4 4 LEU A 97 VAL A 102 5 6 HELIX 5 5 ASP A 138 ILE A 142 5 5 HELIX 6 6 SER A 150 MET A 157 1 8 HELIX 7 7 TYR A 183 LEU A 200 1 18 HELIX 8 8 LEU A 219 ASN A 230 1 12 HELIX 9 9 ASN A 268 TYR A 282 1 15 HELIX 10 10 ASP A 298 ILE A 304 1 7 HELIX 11 11 ALA A 330 LEU A 347 1 18 SHEET 1 AA 8 GLU A 46 VAL A 49 0 SHEET 2 AA 8 VAL A 55 PHE A 59 -1 O ILE A 56 N LYS A 48 SHEET 3 AA 8 ASP A 206 GLY A 211 -1 O ILE A 207 N PHE A 59 SHEET 4 AA 8 ARG A 65 ALA A 69 1 O ILE A 66 N TYR A 208 SHEET 5 AA 8 VAL A 233 PHE A 241 1 O VAL A 233 N MET A 67 SHEET 6 AA 8 ALA A 310 ILE A 318 1 O ALA A 310 N GLY A 234 SHEET 7 AA 8 VAL A 260 VAL A 263 -1 O VAL A 260 N SER A 315 SHEET 8 AA 8 GLN A 287 PRO A 290 1 O GLN A 287 N MET A 261 SHEET 1 AB 7 GLY A 76 ILE A 82 0 SHEET 2 AB 7 LEU A 88 ILE A 93 -1 O HIS A 89 N ASN A 80 SHEET 3 AB 7 VAL A 144 ASP A 145 -1 O VAL A 144 N LEU A 88 SHEET 4 AB 7 GLY A 113 VAL A 119 -1 O VAL A 118 N ASP A 145 SHEET 5 AB 7 ARG A 105 THR A 110 -1 O ILE A 106 N GLY A 117 SHEET 6 AB 7 VAL A 164 PHE A 167 -1 O VAL A 164 N PHE A 109 SHEET 7 AB 7 GLY A 76 ILE A 82 -1 O VAL A 77 N GLY A 165 SHEET 1 AC 3 THR A 172 ARG A 173 0 SHEET 2 AC 3 ARG A 178 ALA A 180 -1 O ALA A 180 N THR A 172 SHEET 3 AC 3 LEU A 327 ASP A 329 -1 O ALA A 328 N PHE A 179 LINK ZN ZN A 401 OD2 ASP A 185 1555 1555 2.01 LINK ZN ZN A 401 OE1 GLU A 216 1555 1555 2.52 LINK ZN ZN A 401 OE2 GLU A 216 1555 1555 2.09 LINK ZN ZN A 401 NE2 HIS A 322 1555 1555 2.11 LINK ZN ZN A 401 CL CL A 405 1555 1555 2.50 LINK ZN ZN A 402 NE2 HIS A 71 1555 1555 2.10 LINK ZN ZN A 402 OD1 ASP A 185 1555 1555 2.00 LINK ZN ZN A 402 OD1 ASP A 238 1555 1555 2.04 LINK ZN ZN A 402 CL CL A 405 1555 1555 2.07 CISPEP 1 SER A 63 PRO A 64 0 -0.77 CISPEP 2 ASP A 185 ASP A 186 0 0.28 SITE 1 AC1 5 PHE A 109 THR A 163 VAL A 164 HOH A2107 SITE 2 AC1 5 HOH A2272 SITE 1 AC2 3 ARG A 173 ASN A 175 GLU A 176 SITE 1 AC3 6 ASP A 185 GLU A 216 HIS A 322 ZN A 402 SITE 2 AC3 6 CL A 405 HOH A2273 SITE 1 AC4 5 HIS A 71 ASP A 185 ASP A 238 ZN A 401 SITE 2 AC4 5 CL A 405 SITE 1 AC5 9 HIS A 71 ASP A 185 GLU A 215 GLU A 216 SITE 2 AC5 9 ASP A 238 ZN A 401 ZN A 402 HOH A2179 SITE 3 AC5 9 HOH A2273 SITE 1 AC6 2 ARG A 65 ASN A 230 CRYST1 132.241 132.241 132.241 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007562 0.00000