HEADER CELL CYCLE 05-MAR-08 2VPV TITLE DIMERIZATION DOMAIN OF MIF2P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MIF2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DIMERIZATION DOMAIN, RESIDUES 365-530; COMPND 5 SYNONYM: MIF2P; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 ATCC: 204508; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: CODON-PLUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NUCLEUS, MITOSIS, CENTROMERE, CELL CYCLE, DNA-BINDING, KINETOCHORE, KEYWDS 2 CELL DIVISION, PHOSPHOPROTEIN, JELLY-ROLL FOLD, DIMERIZATION DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR R.L.COHEN,C.W.ESPELIN,P.K.SORGER,S.C.HARRISON,K.T.SIMONS REVDAT 4 08-MAY-19 2VPV 1 REMARK REVDAT 3 24-FEB-09 2VPV 1 VERSN REVDAT 2 07-OCT-08 2VPV 1 JRNL REVDAT 1 26-AUG-08 2VPV 0 JRNL AUTH R.L.COHEN,C.W.ESPELIN,P.DE WULF,P.K.SORGER,S.C.HARRISON, JRNL AUTH 2 K.T.SIMONS JRNL TITL STRUCTURAL AND FUNCTIONAL DISSECTION OF MIF2P, A CONSERVED JRNL TITL 2 DNA-BINDING KINETOCHORE PROTEIN. JRNL REF MOL.BIOL.CELL V. 19 4480 2008 JRNL REFN ISSN 1059-1524 JRNL PMID 18701705 JRNL DOI 10.1091/MBC.E08-03-0297 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.387 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.204 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.740 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1490 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2003 ; 1.529 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ;10.859 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;34.710 ;24.242 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;19.066 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;22.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 225 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1092 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 899 ; 0.966 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1456 ; 1.817 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 591 ; 1.926 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 547 ; 3.223 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 530 REMARK 3 ORIGIN FOR THE GROUP (A): 71.1321 59.1720 90.4789 REMARK 3 T TENSOR REMARK 3 T11: -0.0231 T22: -0.0239 REMARK 3 T33: -0.0349 T12: -0.0623 REMARK 3 T13: -0.0475 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.9722 L22: 2.9568 REMARK 3 L33: 2.8047 L12: 1.1816 REMARK 3 L13: -1.7501 L23: -1.0927 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: -0.2289 S13: -0.0289 REMARK 3 S21: 0.2031 S22: -0.1337 S23: 0.0577 REMARK 3 S31: -0.1176 S32: 0.2429 S33: 0.0661 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 439 B 530 REMARK 3 ORIGIN FOR THE GROUP (A): 49.5934 74.6750 78.5940 REMARK 3 T TENSOR REMARK 3 T11: -0.0929 T22: 0.0640 REMARK 3 T33: 0.0911 T12: 0.0117 REMARK 3 T13: 0.0266 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 2.9495 L22: 3.1131 REMARK 3 L33: 3.8479 L12: -1.0155 REMARK 3 L13: -0.6954 L23: 0.3087 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: 0.0325 S13: -0.3382 REMARK 3 S21: 0.2971 S22: 0.2578 S23: 0.6004 REMARK 3 S31: 0.1081 S32: -0.5139 S33: -0.1642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1290035562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 78 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.50030 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR FUSION FROM 3-4% REMARK 280 (W/V) PEG 3000, 100 MM IMIDAZOLE (PH 8.0), AND 70-100 MM LI2SO4 REMARK 280 OR NA2SO4, PH 7.5, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.01000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.01000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 53.01000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 53.01000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 53.01000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 53.01000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 53.01000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 53.01000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 53.01000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 53.01000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 53.01000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 53.01000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 53.01000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 53.01000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 365 REMARK 465 PRO A 366 REMARK 465 ASN A 367 REMARK 465 ALA A 368 REMARK 465 LYS A 369 REMARK 465 GLU A 370 REMARK 465 ASN A 371 REMARK 465 LEU A 372 REMARK 465 ILE A 373 REMARK 465 PRO A 374 REMARK 465 GLU A 375 REMARK 465 ASP A 376 REMARK 465 PRO A 377 REMARK 465 ASN A 378 REMARK 465 GLU A 379 REMARK 465 ASP A 380 REMARK 465 ILE A 381 REMARK 465 ILE A 382 REMARK 465 GLU A 383 REMARK 465 ARG A 384 REMARK 465 ILE A 385 REMARK 465 GLU A 386 REMARK 465 SER A 387 REMARK 465 GLY A 388 REMARK 465 GLY A 389 REMARK 465 ILE A 390 REMARK 465 GLU A 391 REMARK 465 ASN A 392 REMARK 465 GLY A 393 REMARK 465 GLU A 394 REMARK 465 TRP A 395 REMARK 465 LEU A 396 REMARK 465 LYS A 397 REMARK 465 HIS A 398 REMARK 465 GLY A 399 REMARK 465 ILE A 400 REMARK 465 LEU A 401 REMARK 465 GLU A 402 REMARK 465 ALA A 403 REMARK 465 ASN A 404 REMARK 465 VAL A 405 REMARK 465 LYS A 406 REMARK 465 ILE A 407 REMARK 465 SER A 408 REMARK 465 ASP A 409 REMARK 465 THR A 410 REMARK 465 LYS A 411 REMARK 465 GLU A 412 REMARK 465 GLU A 413 REMARK 465 THR A 414 REMARK 465 LYS A 415 REMARK 465 ASP A 416 REMARK 465 GLU A 417 REMARK 465 ILE A 418 REMARK 465 ILE A 419 REMARK 465 ALA A 420 REMARK 465 PHE A 421 REMARK 465 ALA A 422 REMARK 465 PRO A 423 REMARK 465 ASN A 424 REMARK 465 LEU A 425 REMARK 465 SER A 426 REMARK 465 GLN A 427 REMARK 465 THR A 428 REMARK 465 GLU A 429 REMARK 465 GLN A 430 REMARK 465 VAL A 431 REMARK 465 LYS A 432 REMARK 465 ASP A 433 REMARK 465 THR A 434 REMARK 465 LYS A 435 REMARK 465 ASP A 436 REMARK 465 ASP B 365 REMARK 465 PRO B 366 REMARK 465 ASN B 367 REMARK 465 ALA B 368 REMARK 465 LYS B 369 REMARK 465 GLU B 370 REMARK 465 ASN B 371 REMARK 465 LEU B 372 REMARK 465 ILE B 373 REMARK 465 PRO B 374 REMARK 465 GLU B 375 REMARK 465 ASP B 376 REMARK 465 PRO B 377 REMARK 465 ASN B 378 REMARK 465 GLU B 379 REMARK 465 ASP B 380 REMARK 465 ILE B 381 REMARK 465 ILE B 382 REMARK 465 GLU B 383 REMARK 465 ARG B 384 REMARK 465 ILE B 385 REMARK 465 GLU B 386 REMARK 465 SER B 387 REMARK 465 GLY B 388 REMARK 465 GLY B 389 REMARK 465 ILE B 390 REMARK 465 GLU B 391 REMARK 465 ASN B 392 REMARK 465 GLY B 393 REMARK 465 GLU B 394 REMARK 465 TRP B 395 REMARK 465 LEU B 396 REMARK 465 LYS B 397 REMARK 465 HIS B 398 REMARK 465 GLY B 399 REMARK 465 ILE B 400 REMARK 465 LEU B 401 REMARK 465 GLU B 402 REMARK 465 ALA B 403 REMARK 465 ASN B 404 REMARK 465 VAL B 405 REMARK 465 LYS B 406 REMARK 465 ILE B 407 REMARK 465 SER B 408 REMARK 465 ASP B 409 REMARK 465 THR B 410 REMARK 465 LYS B 411 REMARK 465 GLU B 412 REMARK 465 GLU B 413 REMARK 465 THR B 414 REMARK 465 LYS B 415 REMARK 465 ASP B 416 REMARK 465 GLU B 417 REMARK 465 ILE B 418 REMARK 465 ILE B 419 REMARK 465 ALA B 420 REMARK 465 PHE B 421 REMARK 465 ALA B 422 REMARK 465 PRO B 423 REMARK 465 ASN B 424 REMARK 465 LEU B 425 REMARK 465 SER B 426 REMARK 465 GLN B 427 REMARK 465 THR B 428 REMARK 465 GLU B 429 REMARK 465 GLN B 430 REMARK 465 VAL B 431 REMARK 465 LYS B 432 REMARK 465 ASP B 433 REMARK 465 THR B 434 REMARK 465 LYS B 435 REMARK 465 ASP B 436 REMARK 465 GLU B 437 REMARK 465 ASN B 438 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 464 REMARK 475 GLN A 465 REMARK 475 SER B 463 REMARK 475 GLY B 464 REMARK 475 GLN B 465 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 460 CB GLN B 465 1.90 REMARK 500 CB ALA B 461 ND2 ASN B 514 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 475 OH TYR B 475 9555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 463 C GLY A 464 N 0.169 REMARK 500 GLN B 465 C LYS B 466 N -0.258 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 442 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 ILE B 462 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 GLN B 465 CA - C - N ANGL. DEV. = 19.6 DEGREES REMARK 500 GLN B 465 O - C - N ANGL. DEV. = -20.4 DEGREES REMARK 500 LYS B 466 C - N - CA ANGL. DEV. = 34.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 441 -179.56 175.68 REMARK 500 GLU A 442 67.56 -157.34 REMARK 500 PHE A 445 108.97 -162.73 REMARK 500 SER A 463 6.88 -60.37 REMARK 500 LYS A 466 143.25 -34.89 REMARK 500 PHE A 472 -130.58 52.61 REMARK 500 ARG A 473 45.98 -96.49 REMARK 500 CYS A 490 -117.25 42.63 REMARK 500 LYS A 491 57.31 -114.55 REMARK 500 ILE B 462 -113.93 -106.61 REMARK 500 PHE B 472 -102.78 -122.20 REMARK 500 ARG B 473 41.59 -85.82 REMARK 500 CYS B 490 -126.69 53.60 REMARK 500 LYS B 498 128.69 -39.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 441 GLU A 442 -48.14 REMARK 500 GLN A 465 LYS A 466 144.44 REMARK 500 PRO B 460 ALA B 461 -146.20 REMARK 500 ALA B 461 ILE B 462 121.18 REMARK 500 ILE B 462 SER B 463 -145.75 REMARK 500 SER B 463 GLY B 464 83.69 REMARK 500 GLY B 464 GLN B 465 85.79 REMARK 500 GLN B 465 LYS B 466 -131.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 463 -20.50 REMARK 500 ILE B 462 -21.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1531 DBREF 2VPV A 365 530 UNP P35201 MIF2_YEAST 365 530 DBREF 2VPV B 365 530 UNP P35201 MIF2_YEAST 365 530 SEQRES 1 A 166 ASP PRO ASN ALA LYS GLU ASN LEU ILE PRO GLU ASP PRO SEQRES 2 A 166 ASN GLU ASP ILE ILE GLU ARG ILE GLU SER GLY GLY ILE SEQRES 3 A 166 GLU ASN GLY GLU TRP LEU LYS HIS GLY ILE LEU GLU ALA SEQRES 4 A 166 ASN VAL LYS ILE SER ASP THR LYS GLU GLU THR LYS ASP SEQRES 5 A 166 GLU ILE ILE ALA PHE ALA PRO ASN LEU SER GLN THR GLU SEQRES 6 A 166 GLN VAL LYS ASP THR LYS ASP GLU ASN PHE ALA LEU GLU SEQRES 7 A 166 ILE MET PHE ASP LYS HIS LYS GLU TYR PHE ALA SER GLY SEQRES 8 A 166 ILE LEU LYS LEU PRO ALA ILE SER GLY GLN LYS LYS LEU SEQRES 9 A 166 SER ASN SER PHE ARG THR TYR ILE THR PHE HIS VAL ILE SEQRES 10 A 166 GLN GLY ILE VAL GLU VAL THR VAL CYS LYS ASN LYS PHE SEQRES 11 A 166 LEU SER VAL LYS GLY SER THR PHE GLN ILE PRO ALA PHE SEQRES 12 A 166 ASN GLU TYR ALA ILE ALA ASN ARG GLY ASN ASP GLU ALA SEQRES 13 A 166 LYS MET PHE PHE VAL GLN VAL THR VAL SER SEQRES 1 B 166 ASP PRO ASN ALA LYS GLU ASN LEU ILE PRO GLU ASP PRO SEQRES 2 B 166 ASN GLU ASP ILE ILE GLU ARG ILE GLU SER GLY GLY ILE SEQRES 3 B 166 GLU ASN GLY GLU TRP LEU LYS HIS GLY ILE LEU GLU ALA SEQRES 4 B 166 ASN VAL LYS ILE SER ASP THR LYS GLU GLU THR LYS ASP SEQRES 5 B 166 GLU ILE ILE ALA PHE ALA PRO ASN LEU SER GLN THR GLU SEQRES 6 B 166 GLN VAL LYS ASP THR LYS ASP GLU ASN PHE ALA LEU GLU SEQRES 7 B 166 ILE MET PHE ASP LYS HIS LYS GLU TYR PHE ALA SER GLY SEQRES 8 B 166 ILE LEU LYS LEU PRO ALA ILE SER GLY GLN LYS LYS LEU SEQRES 9 B 166 SER ASN SER PHE ARG THR TYR ILE THR PHE HIS VAL ILE SEQRES 10 B 166 GLN GLY ILE VAL GLU VAL THR VAL CYS LYS ASN LYS PHE SEQRES 11 B 166 LEU SER VAL LYS GLY SER THR PHE GLN ILE PRO ALA PHE SEQRES 12 B 166 ASN GLU TYR ALA ILE ALA ASN ARG GLY ASN ASP GLU ALA SEQRES 13 B 166 LYS MET PHE PHE VAL GLN VAL THR VAL SER HET SO4 A1531 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *27(H2 O) HELIX 1 1 ILE A 462 LYS A 466 5 5 SHEET 1 AA 5 ILE A 443 MET A 444 0 SHEET 2 AA 5 ALA A 453 LEU A 459 -1 O SER A 454 N MET A 444 SHEET 3 AA 5 ALA A 520 THR A 528 -1 O ALA A 520 N LEU A 459 SHEET 4 AA 5 THR A 474 GLN A 482 -1 O TYR A 475 N VAL A 527 SHEET 5 AA 5 THR A 501 ILE A 504 -1 O PHE A 502 N PHE A 478 SHEET 1 AB 4 LYS A 467 ASN A 470 0 SHEET 2 AB 4 GLU A 509 ASN A 514 -1 O TYR A 510 N SER A 469 SHEET 3 AB 4 ILE A 484 VAL A 489 -1 O GLU A 486 N ALA A 513 SHEET 4 AB 4 ASN A 492 VAL A 497 -1 O ASN A 492 N VAL A 489 SHEET 1 BA 5 ALA B 440 MET B 444 0 SHEET 2 BA 5 ALA B 453 LEU B 459 -1 O SER B 454 N MET B 444 SHEET 3 BA 5 ALA B 520 THR B 528 -1 O ALA B 520 N LEU B 459 SHEET 4 BA 5 THR B 474 GLN B 482 -1 O TYR B 475 N VAL B 527 SHEET 5 BA 5 THR B 501 ILE B 504 -1 O PHE B 502 N PHE B 478 SHEET 1 BB 4 LYS B 466 LEU B 468 0 SHEET 2 BB 4 TYR B 510 ASN B 514 -1 O ILE B 512 N LYS B 467 SHEET 3 BB 4 ILE B 484 VAL B 489 -1 O GLU B 486 N ALA B 513 SHEET 4 BB 4 ASN B 492 VAL B 497 -1 O ASN B 492 N VAL B 489 SSBOND 1 CYS A 490 CYS B 490 1555 9555 2.06 SITE 1 AC1 1 ARG A 515 CRYST1 106.020 106.020 106.020 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009432 0.00000 MTRIX1 1 -0.906500 -0.338800 0.252000 140.39450 1 MTRIX2 1 -0.338800 0.227400 -0.913000 142.53860 1 MTRIX3 1 0.252000 -0.913000 -0.320900 139.52890 1