HEADER DNA BINDING PROTEIN 12-MAR-08 2VQC TITLE STRUCTURE OF A DNA BINDING WINGED-HELIX PROTEIN, F-112, FROM TITLE 2 SULFOLOBUS SPINDLE-SHAPED VIRUS 1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 13.2 KDA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-112; COMPND 5 SYNONYM: ORF F-112, F-112; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS VIRUS-LIKE PARTICLE SSV1; SOURCE 3 ORGANISM_TAXID: 244589; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PEXP14- SSV1 F112 KEYWDS SSV, WINGED-HELIX, CRENARCHAEAL, DNA-BINDING PROTEIN, THERMOPHILIC KEYWDS 2 PROTEIN, SULFOLOBUS SPINDLE VIRUS, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.K.MENON,P.KRAFT,G.J.CORN,B.WIEDENHEFT,M.J.YOUNG,C.M.LAWRENCE REVDAT 5 08-MAY-19 2VQC 1 REMARK LINK REVDAT 4 13-JUL-11 2VQC 1 VERSN REVDAT 3 24-FEB-09 2VQC 1 VERSN REVDAT 2 17-JUN-08 2VQC 1 AUTHOR JRNL REVDAT 1 06-MAY-08 2VQC 0 SPRSDE 06-MAY-08 2VQC 2CMX JRNL AUTH S.K.MENON,W.S.MAATY,G.J.CORN,S.C.KWOK,B.J.EILERS,P.KRAFT, JRNL AUTH 2 E.GILLITZER,M.J.YOUNG,B.BOTHNER,C.M.LAWRENCE JRNL TITL CYSTEINE USAGE IN SULFOLOBUS SPINDLE-SHAPED VIRUS 1 AND JRNL TITL 2 EXTENSION TO HYPERTHERMOPHILIC VIRUSES IN GENERAL. JRNL REF VIROLOGY V. 376 270 2008 JRNL REFN ISSN 0042-6822 JRNL PMID 18471851 JRNL DOI 10.1016/J.VIROL.2008.03.026 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 4133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 235 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 296 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.361 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 593 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 548 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 796 ; 0.923 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1287 ; 0.682 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 69 ; 4.165 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ;30.633 ;24.815 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 123 ;12.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;17.348 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 88 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 626 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 112 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 112 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 519 ; 0.148 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 288 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 315 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 20 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 1 ; 0.625 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.129 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 460 ; 0.306 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 568 ; 0.387 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 288 ; 0.667 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 228 ; 0.986 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0594 27.6972 10.0265 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.0916 REMARK 3 T33: 0.0986 T12: -0.0331 REMARK 3 T13: -0.0629 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 20.4345 L22: 57.4117 REMARK 3 L33: 22.7477 L12: 7.8620 REMARK 3 L13: 8.3219 L23: 8.2468 REMARK 3 S TENSOR REMARK 3 S11: 0.3180 S12: 0.0004 S13: -0.3899 REMARK 3 S21: -0.4792 S22: -0.4181 S23: 2.4629 REMARK 3 S31: 1.1153 S32: -0.6488 S33: 0.1001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9289 31.1551 14.0880 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: 0.1576 REMARK 3 T33: 0.0117 T12: 0.0602 REMARK 3 T13: 0.0943 T23: 0.1364 REMARK 3 L TENSOR REMARK 3 L11: 42.6762 L22: 49.7622 REMARK 3 L33: 22.6668 L12: 30.7014 REMARK 3 L13: 19.1788 L23: 19.8412 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: -2.3763 S13: -0.6202 REMARK 3 S21: 0.7836 S22: -0.0682 S23: 0.0833 REMARK 3 S31: 0.7768 S32: -1.3974 S33: 0.1617 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9025 35.6217 16.0181 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.0550 REMARK 3 T33: -0.0365 T12: 0.0207 REMARK 3 T13: 0.0534 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 18.6670 L22: 42.4153 REMARK 3 L33: 9.4196 L12: -9.9397 REMARK 3 L13: 9.9288 L23: 7.1081 REMARK 3 S TENSOR REMARK 3 S11: -0.1595 S12: -0.8726 S13: 0.1352 REMARK 3 S21: 1.4842 S22: 0.4268 S23: 0.1518 REMARK 3 S31: 0.4233 S32: 0.2800 S33: -0.2673 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7969 39.0837 17.8849 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.1427 REMARK 3 T33: 0.1977 T12: 0.1110 REMARK 3 T13: -0.1140 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 25.6640 L22: 45.0534 REMARK 3 L33: 29.1903 L12: 9.6917 REMARK 3 L13: 5.2962 L23: 13.6446 REMARK 3 S TENSOR REMARK 3 S11: -0.6705 S12: -1.4059 S13: -0.5206 REMARK 3 S21: 2.2818 S22: 1.1624 S23: -0.6554 REMARK 3 S31: -0.6024 S32: 0.7198 S33: -0.4919 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5521 40.5329 10.8135 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.2440 REMARK 3 T33: 0.2503 T12: -0.0321 REMARK 3 T13: 0.0178 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.7557 L22: 12.3989 REMARK 3 L33: 39.3579 L12: 2.0734 REMARK 3 L13: 4.6449 L23: 21.2602 REMARK 3 S TENSOR REMARK 3 S11: -0.2429 S12: 0.3183 S13: 0.3161 REMARK 3 S21: -0.3124 S22: 0.6423 S23: -0.9061 REMARK 3 S31: -0.4986 S32: 2.1921 S33: -0.3994 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0760 33.3608 5.1962 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.1210 REMARK 3 T33: -0.0500 T12: 0.0126 REMARK 3 T13: 0.0114 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 12.5992 L22: 27.5463 REMARK 3 L33: 6.6279 L12: -1.7452 REMARK 3 L13: -1.2335 L23: -13.1586 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: 0.5700 S13: 0.7594 REMARK 3 S21: -0.5631 S22: -0.1746 S23: -0.3082 REMARK 3 S31: 0.2189 S32: 0.1403 S33: 0.1121 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2425 26.7090 8.7057 REMARK 3 T TENSOR REMARK 3 T11: -0.0226 T22: 0.0234 REMARK 3 T33: -0.0983 T12: 0.0173 REMARK 3 T13: 0.0420 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 12.2454 L22: 26.7784 REMARK 3 L33: 14.7917 L12: 3.0990 REMARK 3 L13: 2.7234 L23: 9.7996 REMARK 3 S TENSOR REMARK 3 S11: 0.2159 S12: -0.4284 S13: -0.3337 REMARK 3 S21: 0.6233 S22: 0.1374 S23: -0.9352 REMARK 3 S31: 0.9100 S32: 0.1413 S33: -0.3533 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2410 27.8377 0.0199 REMARK 3 T TENSOR REMARK 3 T11: -0.0009 T22: -0.0072 REMARK 3 T33: -0.0375 T12: 0.0007 REMARK 3 T13: -0.0503 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 14.7172 L22: 29.8080 REMARK 3 L33: 30.2324 L12: -19.6425 REMARK 3 L13: -9.0038 L23: 2.5934 REMARK 3 S TENSOR REMARK 3 S11: 0.4127 S12: -0.0665 S13: -0.9424 REMARK 3 S21: 0.0726 S22: -0.6991 S23: 0.9689 REMARK 3 S31: -0.2028 S32: -0.1293 S33: 0.2864 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7063 32.3752 2.7628 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: -0.0108 REMARK 3 T33: -0.0805 T12: 0.0169 REMARK 3 T13: -0.0065 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 27.9210 L22: 24.9401 REMARK 3 L33: 14.6935 L12: -12.4986 REMARK 3 L13: 1.5074 L23: 6.2601 REMARK 3 S TENSOR REMARK 3 S11: -0.1603 S12: 0.9271 S13: 0.7008 REMARK 3 S21: -1.0581 S22: -0.1315 S23: 0.1031 REMARK 3 S31: 0.2106 S32: 0.0223 S33: 0.2918 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5713 36.7220 5.6537 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: -0.0895 REMARK 3 T33: -0.0381 T12: 0.0639 REMARK 3 T13: -0.0103 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 36.2346 L22: 28.3510 REMARK 3 L33: 34.4466 L12: 0.6387 REMARK 3 L13: -12.4086 L23: -8.5056 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: 1.0795 S13: -0.8374 REMARK 3 S21: -1.5818 S22: -0.3227 S23: 0.5566 REMARK 3 S31: 0.5266 S32: -0.6922 S33: 0.3816 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8180 41.4088 9.8478 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.0102 REMARK 3 T33: 0.0966 T12: 0.0218 REMARK 3 T13: 0.0039 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 21.2172 L22: 33.4900 REMARK 3 L33: 32.8285 L12: 9.8800 REMARK 3 L13: -5.0360 L23: 27.8850 REMARK 3 S TENSOR REMARK 3 S11: -0.9129 S12: 0.3685 S13: 0.2360 REMARK 3 S21: -1.1077 S22: 0.7648 S23: -0.7107 REMARK 3 S31: -1.5369 S32: 1.1084 S33: 0.1481 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5465 45.9648 14.2541 REMARK 3 T TENSOR REMARK 3 T11: -0.0756 T22: -0.1293 REMARK 3 T33: 0.0565 T12: 0.0713 REMARK 3 T13: 0.0763 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 30.3591 L22: 45.7475 REMARK 3 L33: 18.4230 L12: 18.6259 REMARK 3 L13: 10.3914 L23: 14.5771 REMARK 3 S TENSOR REMARK 3 S11: 0.4844 S12: -0.5055 S13: 0.7896 REMARK 3 S21: 0.7023 S22: -0.9185 S23: 1.3741 REMARK 3 S31: 0.4961 S32: 0.0473 S33: 0.4341 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9821 47.3610 10.5109 REMARK 3 T TENSOR REMARK 3 T11: 0.1337 T22: -0.0878 REMARK 3 T33: 0.2520 T12: -0.0062 REMARK 3 T13: -0.0111 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 17.8007 L22: 3.0456 REMARK 3 L33: 82.8492 L12: -7.0908 REMARK 3 L13: -7.1586 L23: -1.3530 REMARK 3 S TENSOR REMARK 3 S11: 0.5281 S12: 0.5713 S13: -0.0682 REMARK 3 S21: 0.6048 S22: -0.2263 S23: -1.0689 REMARK 3 S31: -0.6281 S32: 0.6828 S33: -0.3018 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5234 44.4157 -1.7774 REMARK 3 T TENSOR REMARK 3 T11: 0.9271 T22: 0.6409 REMARK 3 T33: 0.3275 T12: -0.0475 REMARK 3 T13: 0.2399 T23: 0.4089 REMARK 3 L TENSOR REMARK 3 L11: 43.0197 L22: 88.8264 REMARK 3 L33: 34.9574 L12: -17.5736 REMARK 3 L13: 30.1035 L23: 21.3815 REMARK 3 S TENSOR REMARK 3 S11: -0.1969 S12: 3.3339 S13: 1.0185 REMARK 3 S21: -3.0548 S22: -0.9842 S23: 0.6070 REMARK 3 S31: -2.0445 S32: 2.3047 S33: 1.1811 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9680 45.0751 10.8772 REMARK 3 T TENSOR REMARK 3 T11: -0.1565 T22: -0.1949 REMARK 3 T33: 0.0466 T12: 0.0205 REMARK 3 T13: -0.0144 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 7.5185 L22: 16.0505 REMARK 3 L33: 42.6135 L12: -1.5928 REMARK 3 L13: -8.2568 L23: 13.7661 REMARK 3 S TENSOR REMARK 3 S11: 0.1094 S12: 0.1586 S13: 0.9628 REMARK 3 S21: -0.6429 S22: 0.0033 S23: -0.4148 REMARK 3 S31: -0.5530 S32: 1.0385 S33: -0.1127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 1-3 AND 74-112 ARE DISORDERED REMARK 4 REMARK 4 2VQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1290035673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.891940, 0.979180, 0.979320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4411 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION IN 0.1M REMARK 280 MES (PH 6.0). QIUCK SOAK IN ML CONTAINING 25% GLYCEROL AS A REMARK 280 CRYOPROTECTANT., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.85800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.32143 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.49700 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 43.85800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.32143 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.49700 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 43.85800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.32143 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.49700 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.64286 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 22.99400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.64286 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 22.99400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.64286 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 22.99400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 74 REMARK 465 GLU A 75 REMARK 465 GLN A 76 REMARK 465 LYS A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 GLN A 80 REMARK 465 LYS A 81 REMARK 465 GLN A 82 REMARK 465 GLU A 83 REMARK 465 GLN A 84 REMARK 465 THR A 85 REMARK 465 GLN A 86 REMARK 465 ASP A 87 REMARK 465 ASN A 88 REMARK 465 ILE A 89 REMARK 465 ALA A 90 REMARK 465 LYS A 91 REMARK 465 ILE A 92 REMARK 465 PHE A 93 REMARK 465 ASP A 94 REMARK 465 ALA A 95 REMARK 465 GLN A 96 REMARK 465 PRO A 97 REMARK 465 ALA A 98 REMARK 465 ASN A 99 REMARK 465 PHE A 100 REMARK 465 GLU A 101 REMARK 465 GLN A 102 REMARK 465 THR A 103 REMARK 465 ASP A 104 REMARK 465 GLN A 105 REMARK 465 GLY A 106 REMARK 465 PHE A 107 REMARK 465 ILE A 108 REMARK 465 LYS A 109 REMARK 465 ALA A 110 REMARK 465 LYS A 111 REMARK 465 GLN A 112 DBREF 2VQC A -5 1 PDB 2VQC 2VQC -5 1 DBREF 2VQC A 2 112 UNP P20220 Y13K_SSV1 2 112 SEQRES 1 A 118 MSE HIS HIS HIS HIS HIS HIS ALA GLN THR LEU ASN SER SEQRES 2 A 118 TYR LYS MSE ALA GLU ILE MSE TYR LYS ILE LEU GLU LYS SEQRES 3 A 118 LYS GLY GLU LEU THR LEU GLU ASP ILE LEU ALA GLN PHE SEQRES 4 A 118 GLU ILE SER VAL PRO SER ALA TYR ASN ILE GLN ARG ALA SEQRES 5 A 118 LEU LYS ALA ILE CYS GLU ARG HIS PRO ASP GLU CYS GLU SEQRES 6 A 118 VAL GLN TYR LYS ASN ARG LYS THR THR PHE LYS TRP ILE SEQRES 7 A 118 LYS GLN GLU GLN LYS GLU GLU GLN LYS GLN GLU GLN THR SEQRES 8 A 118 GLN ASP ASN ILE ALA LYS ILE PHE ASP ALA GLN PRO ALA SEQRES 9 A 118 ASN PHE GLU GLN THR ASP GLN GLY PHE ILE LYS ALA LYS SEQRES 10 A 118 GLN MODRES 2VQC MSE A 10 MET SELENOMETHIONINE MODRES 2VQC MSE A 14 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 14 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 HOH *25(H2 O) HELIX 1 1 ASN A 6 GLY A 22 1 17 HELIX 2 2 THR A 25 GLU A 34 1 10 HELIX 3 3 SER A 36 HIS A 54 1 19 SHEET 1 AA 3 GLU A 23 LEU A 24 0 SHEET 2 AA 3 THR A 67 TRP A 71 -1 O PHE A 69 N LEU A 24 SHEET 3 AA 3 CYS A 58 TYR A 62 -1 O GLU A 59 N LYS A 70 SSBOND 1 CYS A 51 CYS A 58 1555 1555 2.04 LINK C LYS A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N ALA A 11 1555 1555 1.33 LINK C ILE A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N TYR A 15 1555 1555 1.33 CRYST1 87.716 87.716 34.491 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011400 0.006582 0.000000 0.00000 SCALE2 0.000000 0.013164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028993 0.00000