HEADER CELL INVASION 17-APR-08 2VRZ TITLE STRUCTURAL ANALYSIS OF HOMODIMERIC STAPHYLOCOCCAL AUREUS TITLE 2 ESXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRULENCE FACTOR ESXA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: MU50; SOURCE 5 ATCC: 700699; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 OTHER_DETAILS: GENOMIC DNA KEYWDS SECRETED, VIRULENCE, VIRULENCE FACTOR, FOUR HELICAL BUNDLE, KEYWDS 2 CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR R.SUNDARAMOORTHY,W.N.HUNTER REVDAT 5 25-AUG-09 2VRZ 1 HEADER KEYWDS REVDAT 4 24-FEB-09 2VRZ 1 VERSN REVDAT 3 28-OCT-08 2VRZ 1 JRNL REVDAT 2 02-SEP-08 2VRZ 1 AUTHOR REVDAT 1 26-AUG-08 2VRZ 0 JRNL AUTH R.SUNDARAMOORTHY,P.K.FYFE,W.N.HUNTER JRNL TITL STRUCTURE OF STAPHYLOCOCCUS AUREUS ESXA SUGGESTS A JRNL TITL 2 CONTRIBUTION TO VIRULENCE BY ACTION AS A TRANSPORT JRNL TITL 3 CHAPERONE AND/OR ADAPTOR PROTEIN. JRNL REF J.MOL.BIOL. V. 383 603 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18773907 JRNL DOI 10.1016/J.JMB.2008.08.047 REMARK 2 REMARK 2 RESOLUTION. 1.9 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 11525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 629 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 579 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1491 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.252 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1557 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2113 ; 1.380 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 5.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;38.457 ;26.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 303 ;15.809 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 225 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1223 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 761 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1089 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 87 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 992 ; 0.946 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1540 ; 1.410 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 634 ; 2.713 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 557 ; 4.428 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VRZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-08. REMARK 100 THE PDBE ID CODE IS EBI-35954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX 007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13006 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.6 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.8 REMARK 200 R MERGE FOR SHELL (I) : 0.14 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 5.5, 80MM ZINC REMARK 280 ACETATE, 8% PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 13.81800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 97 REMARK 465 ALA B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 MSE B 3 REMARK 465 GLN B 89 REMARK 465 LEU B 90 REMARK 465 SER B 91 REMARK 465 ASN B 92 REMARK 465 ASN B 93 REMARK 465 PHE B 94 REMARK 465 GLY B 95 REMARK 465 LEU B 96 REMARK 465 GLN B 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 86 CG CD OE1 NE2 REMARK 470 GLN B 88 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 NE2 HIS A 0 ZN ZN A 1097 1354 2.10 REMARK 500 OE2 GLU B 44 ZN ZN A 1098 1354 2.12 REMARK 500 ZN ZN A 1097 NE2 HIS A 0 1344 2.10 REMARK 500 ZN ZN A 1098 OE2 GLU B 44 1344 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1097 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 10 OE2 REMARK 620 2 GLU B 38 OE2 110.2 REMARK 620 3 HOH A2064 O 110.0 100.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1098 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 9 OE2 REMARK 620 2 HOH A2065 O 121.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1099 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2067 O REMARK 620 2 GLU B 85A OE2 86.3 REMARK 620 3 GLU B 85B OE1 124.2 45.8 REMARK 620 4 HOH A2066 O 93.0 73.5 97.0 REMARK 620 5 ASP A 23 OD1 147.1 121.8 88.7 80.8 REMARK 620 6 ASP A 23 OD2 91.7 163.5 142.6 90.2 56.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1100 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE1 REMARK 620 2 GLU A 53 OE2 59.5 REMARK 620 3 ASP B 23 OD2 80.7 83.1 REMARK 620 4 GLU A 85 OE1 130.8 96.1 142.5 REMARK 620 5 ASP B 23 OD1 134.9 109.6 54.2 92.0 REMARK 620 6 HOH A2068 O 91.4 150.9 94.1 103.2 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 81 OD2 REMARK 620 2 GLU A 70 OE1 105.2 REMARK 620 3 LYS A 73 NZ 111.9 132.6 REMARK 620 4 GLU B 85A OE2 111.0 99.3 94.0 REMARK 620 5 GLU B 85B OE2 98.5 108.9 93.9 13.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1089 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD1 REMARK 620 2 GLU A 85 OE2 100.1 REMARK 620 3 LYS B 73 NZ 110.7 94.8 REMARK 620 4 GLU B 70 OE1 108.1 107.5 130.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1090 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 38 OE1 REMARK 620 2 GLU B 10 OE2 95.5 REMARK 620 3 GLU A 38 OE2 56.8 111.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1097 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1089 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1098 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1099 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1090 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VS0 RELATED DB: PDB REMARK 900 STRUCTURAL ANALYSIS OF HOMODIMERIC REMARK 900 STAPHYLOCOCCAL AUREUS VIRULENCE FACTOR ESXA DBREF 2VRZ A -1 0 PDB 2VRZ 2VRZ -1 0 DBREF 2VRZ A 1 97 UNP Q99WU4 ESXA_STAAM 1 97 DBREF 2VRZ B -1 0 PDB 2VRZ 2VRZ -1 0 DBREF 2VRZ B 1 97 UNP Q99WU4 ESXA_STAAM 1 97 SEQRES 1 A 99 ALA HIS MSE ALA MSE ILE LYS MSE SER PRO GLU GLU ILE SEQRES 2 A 99 ARG ALA LYS SER GLN SER TYR GLY GLN GLY SER ASP GLN SEQRES 3 A 99 ILE ARG GLN ILE LEU SER ASP LEU THR ARG ALA GLN GLY SEQRES 4 A 99 GLU ILE ALA ALA ASN TRP GLU GLY GLN ALA PHE SER ARG SEQRES 5 A 99 PHE GLU GLU GLN PHE GLN GLN LEU SER PRO LYS VAL GLU SEQRES 6 A 99 LYS PHE ALA GLN LEU LEU GLU GLU ILE LYS GLN GLN LEU SEQRES 7 A 99 ASN SER THR ALA ASP ALA VAL GLN GLU GLN ASP GLN GLN SEQRES 8 A 99 LEU SER ASN ASN PHE GLY LEU GLN SEQRES 1 B 99 ALA HIS MSE ALA MSE ILE LYS MSE SER PRO GLU GLU ILE SEQRES 2 B 99 ARG ALA LYS SER GLN SER TYR GLY GLN GLY SER ASP GLN SEQRES 3 B 99 ILE ARG GLN ILE LEU SER ASP LEU THR ARG ALA GLN GLY SEQRES 4 B 99 GLU ILE ALA ALA ASN TRP GLU GLY GLN ALA PHE SER ARG SEQRES 5 B 99 PHE GLU GLU GLN PHE GLN GLN LEU SER PRO LYS VAL GLU SEQRES 6 B 99 LYS PHE ALA GLN LEU LEU GLU GLU ILE LYS GLN GLN LEU SEQRES 7 B 99 ASN SER THR ALA ASP ALA VAL GLN GLU GLN ASP GLN GLN SEQRES 8 B 99 LEU SER ASN ASN PHE GLY LEU GLN MODRES 2VRZ MSE A 1 MET SELENOMETHIONINE MODRES 2VRZ MSE A 3 MET SELENOMETHIONINE MODRES 2VRZ MSE A 6 MET SELENOMETHIONINE MODRES 2VRZ MSE B 6 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 3 8 HET MSE A 6 8 HET MSE B 6 8 HET ZN A1097 1 HET ZN B1089 1 HET ZN A1098 1 HET ZN A1099 1 HET ZN A1100 1 HET ZN A1101 1 HET ZN B1090 1 HETNAM ZN ZINC ION HETNAM MSE SELENOMETHIONINE FORMUL 3 ZN 7(ZN 2+) FORMUL 4 MSE 4(C5 H11 N O2 SE) FORMUL 5 HOH *112(H2 O1) HELIX 1 1 SER A 7 TRP A 43 1 37 HELIX 2 2 GLY A 45 ASN A 93 1 49 HELIX 3 3 SER B 7 TRP B 43 1 37 HELIX 4 4 PHE B 48 ASP B 87 1 40 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C ALA A 2 N MSE A 3 1555 1555 1.33 LINK C MSE A 3 N ILE A 4 1555 1555 1.32 LINK C LYS A 5 N MSE A 6 1555 1555 1.34 LINK C MSE A 6 N SER A 7 1555 1555 1.33 LINK ZN ZN A1097 O HOH A2064 1555 1555 2.04 LINK ZN ZN A1097 OE2 GLU B 38 1555 1555 1.89 LINK ZN ZN A1097 OE2 GLU A 10 1555 1555 1.87 LINK ZN ZN A1098 O HOH A2065 1555 1555 1.95 LINK ZN ZN A1098 OE2 GLU A 9 1555 1555 2.11 LINK ZN ZN A1099 O HOH A2067 1555 1555 1.90 LINK ZN ZN A1099 O HOH A2066 1555 1555 2.15 LINK ZN ZN A1099 OE1BGLU B 85 1555 1455 2.00 LINK ZN ZN A1099 OE2AGLU B 85 1555 1455 2.14 LINK ZN ZN A1099 OD1 ASP A 23 1555 1555 2.45 LINK ZN ZN A1099 OD2 ASP A 23 1555 1555 2.14 LINK ZN ZN A1100 OE1 GLU A 53 1555 1555 2.23 LINK ZN ZN A1100 OE2 GLU A 53 1555 1555 2.15 LINK ZN ZN A1100 OD2 ASP B 23 1555 1565 2.44 LINK ZN ZN A1100 O HOH A2068 1555 1555 1.87 LINK ZN ZN A1100 OD1 ASP B 23 1555 1565 2.37 LINK ZN ZN A1100 OE1 GLU A 85 1555 1665 2.05 LINK ZN ZN A1101 OE2BGLU B 85 1555 1455 1.99 LINK ZN ZN A1101 OE2AGLU B 85 1555 1455 2.50 LINK ZN ZN A1101 NZ LYS A 73 1555 1555 1.78 LINK ZN ZN A1101 OE1 GLU A 70 1555 1555 1.90 LINK ZN ZN A1101 OD2 ASP B 81 1555 1455 2.03 LINK C LYS B 5 N MSE B 6 1555 1555 1.34 LINK C MSE B 6 N SER B 7 1555 1555 1.33 LINK ZN ZN B1089 OE1 GLU B 70 1555 1555 1.91 LINK ZN ZN B1089 NZ LYS B 73 1555 1555 2.17 LINK ZN ZN B1089 OE2 GLU A 85 1555 1655 2.03 LINK ZN ZN B1089 OD1 ASP A 81 1555 1655 2.03 LINK ZN ZN B1090 OE2 GLU A 38 1555 1555 2.02 LINK ZN ZN B1090 OE2 GLU B 10 1555 1555 2.03 LINK ZN ZN B1090 OE1 GLU A 38 1555 1555 2.49 SITE 1 AC1 3 GLU A 10 HOH A2064 GLU B 38 SITE 1 AC2 4 ASP A 81 GLU A 85 GLU B 70 LYS B 73 SITE 1 AC3 2 GLU A 9 HOH A2065 SITE 1 AC4 4 ASP A 23 HOH A2066 HOH A2067 GLU B 85 SITE 1 AC5 4 GLU A 53 GLU A 85 HOH A2068 ASP B 23 SITE 1 AC6 4 GLU A 70 LYS A 73 ASP B 81 GLU B 85 SITE 1 AC7 2 GLU A 38 GLU B 10 CRYST1 46.232 27.636 64.394 90.00 105.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021630 0.000000 0.005970 0.00000 SCALE2 0.000000 0.036185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016110 0.00000 MTRIX1 1 0.656600 -0.728100 0.196800 23.72000 1 MTRIX2 1 -0.727800 -0.680100 -0.088290 62.78000 1 MTRIX3 1 0.198200 -0.085290 -0.976500 32.45000 1