HEADER HYDROLASE 23-APR-08 2VSF TITLE STRUCTURE OF XPD FROM THERMOPLASMA ACIDOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR HELICASE RAD3 RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: XPD; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS NER, TFIIH, HELICASE, HYDROLASE, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 2 IRON SULFUR CLUSTER EXPDTA X-RAY DIFFRACTION AUTHOR J.KUPER,S.C.WOLSKI,J.J.TRUGLIO,C.KISKER REVDAT 3 13-JUL-11 2VSF 1 VERSN REVDAT 2 24-FEB-09 2VSF 1 VERSN REVDAT 1 08-JUL-08 2VSF 0 JRNL AUTH S.C.WOLSKI,J.KUPER,P.HAENZELMANN,J.J.TRUGLIO,D.L.CROTEAU, JRNL AUTH 2 B.VAN HOUTEN,C.KISKER JRNL TITL CRYSTAL STRUCTURE OF THE FES CLUSTER-CONTAINING NUCLEOTIDE JRNL TITL 2 EXCISION REPAIR HELICASE XPD. JRNL REF PLOS BIOL. V. 6 E149 2008 JRNL REFN ISSN 1544-9173 JRNL PMID 18578568 JRNL DOI 10.1371/JOURNAL.PBIO.0060149 REMARK 2 REMARK 2 RESOLUTION. 2.9 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 895 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4751 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.515 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.427 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 49.724 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4857 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3452 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6540 ; 0.925 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8354 ; 0.780 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 6.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;32.813 ;23.432 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 899 ;17.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;13.261 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 699 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5356 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1032 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1229 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3652 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2381 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2692 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.135 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.137 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.118 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3061 ; 0.791 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4727 ; 1.470 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2086 ; 1.903 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1801 ; 2.979 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 79 REMARK 3 RESIDUE RANGE : A 176 A 224 REMARK 3 RESIDUE RANGE : A 363 A 405 REMARK 3 ORIGIN FOR THE GROUP (A): -44.7358 34.1328 12.3891 REMARK 3 T TENSOR REMARK 3 T11: -0.0085 T22: 0.0261 REMARK 3 T33: 0.1749 T12: -0.2876 REMARK 3 T13: -0.2840 T23: 0.0985 REMARK 3 L TENSOR REMARK 3 L11: 4.0650 L22: 10.1864 REMARK 3 L33: 4.7998 L12: -0.0917 REMARK 3 L13: -0.2999 L23: -3.6955 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: 0.6067 S13: 0.0755 REMARK 3 S21: -1.5207 S22: 0.4352 S23: 1.6355 REMARK 3 S31: 0.6680 S32: -0.6454 S33: -0.3985 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 175 REMARK 3 RESIDUE RANGE : A 1616 A 1616 REMARK 3 ORIGIN FOR THE GROUP (A): -35.6184 57.1209 13.1739 REMARK 3 T TENSOR REMARK 3 T11: -0.2112 T22: -0.2052 REMARK 3 T33: -0.0837 T12: 0.0160 REMARK 3 T13: 0.0614 T23: 0.0859 REMARK 3 L TENSOR REMARK 3 L11: 2.3095 L22: 7.3572 REMARK 3 L33: 8.0934 L12: 1.7334 REMARK 3 L13: -1.1087 L23: -1.9183 REMARK 3 S TENSOR REMARK 3 S11: 0.1921 S12: 0.0441 S13: 0.3662 REMARK 3 S21: -0.2068 S22: 0.2556 S23: 0.7117 REMARK 3 S31: -0.1386 S32: -0.2338 S33: -0.4477 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): -26.3235 42.0060 42.0677 REMARK 3 T TENSOR REMARK 3 T11: -0.3212 T22: 0.0944 REMARK 3 T33: -0.2142 T12: -0.0886 REMARK 3 T13: 0.0778 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 2.6264 L22: 8.7906 REMARK 3 L33: 2.2422 L12: -1.5218 REMARK 3 L13: 0.9895 L23: 1.2986 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: -0.3632 S13: -0.0643 REMARK 3 S21: 0.3674 S22: 0.2718 S23: -0.2469 REMARK 3 S31: 0.2387 S32: 0.1581 S33: -0.2068 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 406 A 615 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1039 17.9094 9.1766 REMARK 3 T TENSOR REMARK 3 T11: 0.3091 T22: -0.0002 REMARK 3 T33: 0.1553 T12: -0.1450 REMARK 3 T13: -0.0594 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 5.4153 L22: 0.9735 REMARK 3 L33: 8.0828 L12: -0.5369 REMARK 3 L13: -3.2251 L23: 2.7011 REMARK 3 S TENSOR REMARK 3 S11: -0.1235 S12: 0.3299 S13: 0.1845 REMARK 3 S21: -0.0808 S22: 0.2391 S23: -0.2384 REMARK 3 S31: -0.5418 S32: 0.5905 S33: -0.1156 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-08. REMARK 100 THE PDBE ID CODE IS EBI-35587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSLFM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13622 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.90 REMARK 200 RESOLUTION RANGE LOW (A) : 63.63 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.98 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.89 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.56 REMARK 200 R MERGE FOR SHELL (I) : 0.62 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.24 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.4 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 10-15% PEG 400, 0.1M REMARK 280 SODIUM CITRATE PH5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.01333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.02000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.00667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 145.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 GLN A 20 REMARK 465 LYS A 21 REMARK 465 SER A 22 REMARK 465 ILE A 510 REMARK 465 ASN A 511 REMARK 465 PHE A 512 REMARK 465 PRO A 513 REMARK 465 GLY A 514 REMARK 465 GLU A 616 REMARK 465 LYS A 617 REMARK 465 TYR A 618 REMARK 465 GLY A 619 REMARK 465 ALA A 620 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 33 77.28 39.32 REMARK 500 ALA A 43 22.41 -142.17 REMARK 500 TYR A 46 -86.04 61.78 REMARK 500 SER A 47 -77.60 41.46 REMARK 500 LYS A 51 -15.72 64.85 REMARK 500 ARG A 59 -72.56 -81.75 REMARK 500 GLU A 212 50.88 38.91 REMARK 500 ASP A 341 -102.04 -68.79 REMARK 500 GLN A 342 -166.69 -75.57 REMARK 500 ASP A 343 -4.57 100.99 REMARK 500 SER A 382 -67.96 -153.68 REMARK 500 THR A 384 84.92 -155.10 REMARK 500 LEU A 385 47.17 -156.41 REMARK 500 ASP A 386 -80.03 -33.34 REMARK 500 LYS A 403 53.53 -102.18 REMARK 500 ASP A 429 97.31 68.71 REMARK 500 ASN A 450 89.12 -56.73 REMARK 500 SER A 469 49.86 -142.10 REMARK 500 HIS A 472 -168.84 -123.80 REMARK 500 GLU A 475 66.71 -152.95 REMARK 500 ARG A 477 155.61 -47.35 REMARK 500 ILE A 479 -76.37 66.82 REMARK 500 ASP A 480 125.27 34.47 REMARK 500 HIS A 495 -132.19 58.08 REMARK 500 GLU A 508 47.69 -94.85 REMARK 500 GLU A 518 -45.45 -164.33 REMARK 500 PRO A 530 41.14 -55.37 REMARK 500 LYS A 547 57.20 -149.02 REMARK 500 VAL A 553 -58.21 -122.40 REMARK 500 ARG A 562 -36.34 -36.25 REMARK 500 ALA A 614 -51.59 -29.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1617 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 162 ND2 REMARK 620 2 GLU A 312 OE2 68.7 REMARK 620 3 GLU A 312 OE1 83.7 44.5 REMARK 620 4 GLU A 315 OE2 87.4 101.4 59.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1616 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 92 SG REMARK 620 2 SF4 A1616 FE2 158.8 REMARK 620 3 SF4 A1616 FE3 139.2 59.8 REMARK 620 4 SF4 A1616 FE4 134.1 58.7 58.8 REMARK 620 5 SF4 A1616 S2 99.2 101.5 53.9 53.8 REMARK 620 6 SF4 A1616 S3 115.9 54.2 101.4 53.4 104.0 REMARK 620 7 SF4 A1616 S4 123.3 54.5 54.3 101.1 105.6 106.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1616 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SF4 A1616 FE1 REMARK 620 2 SF4 A1616 FE3 60.1 REMARK 620 3 SF4 A1616 FE4 61.6 59.9 REMARK 620 4 SF4 A1616 S1 103.5 54.6 54.1 REMARK 620 5 SF4 A1616 S3 54.1 101.6 54.5 106.2 REMARK 620 6 SF4 A1616 S4 53.8 54.2 102.9 105.8 105.5 REMARK 620 7 CYS A 128 SG 148.6 147.2 136.4 107.4 110.3 120.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1616 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 113 SG REMARK 620 2 SF4 A1616 FE1 129.4 REMARK 620 3 SF4 A1616 FE2 145.0 60.1 REMARK 620 4 SF4 A1616 FE4 154.3 61.5 59.7 REMARK 620 5 SF4 A1616 S1 126.9 103.2 54.2 53.9 REMARK 620 6 SF4 A1616 S2 109.3 54.3 102.0 55.0 106.5 REMARK 620 7 SF4 A1616 S4 100.9 54.0 54.6 103.0 105.7 105.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1616 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 164 SG REMARK 620 2 SF4 A1616 FE1 151.1 REMARK 620 3 SF4 A1616 FE2 148.0 59.7 REMARK 620 4 SF4 A1616 FE3 131.4 59.6 60.4 REMARK 620 5 SF4 A1616 S1 104.2 102.5 54.8 55.0 REMARK 620 6 SF4 A1616 S2 107.8 53.3 101.9 54.1 106.7 REMARK 620 7 SF4 A1616 S3 126.6 53.3 54.6 102.1 106.8 103.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A1616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1617 DBREF 2VSF A 19 620 UNP Q9HM14 Q9HM14_THEAC 1 602 SEQRES 1 A 602 MET GLN LYS SER TYR GLY VAL ALA LEU GLU SER PRO THR SEQRES 2 A 602 GLY SER GLY LYS THR ILE MET ALA LEU LYS SER ALA LEU SEQRES 3 A 602 GLN TYR SER SER GLU ARG LYS LEU LYS VAL LEU TYR LEU SEQRES 4 A 602 VAL ARG THR ASN SER GLN GLU GLU GLN VAL ILE LYS GLU SEQRES 5 A 602 LEU ARG SER LEU SER SER THR MET LYS ILE ARG ALA ILE SEQRES 6 A 602 PRO MET GLN GLY ARG VAL ASN MET CYS ILE LEU TYR ARG SEQRES 7 A 602 MET VAL ASP ASP LEU HIS GLU ILE ASN ALA GLU SER LEU SEQRES 8 A 602 ALA LYS PHE CYS ASN MET LYS LYS ARG GLU VAL MET ALA SEQRES 9 A 602 GLY ASN GLU ALA ALA CYS PRO TYR PHE ASN PHE LYS ILE SEQRES 10 A 602 ARG SER ASP GLU THR LYS ARG PHE LEU PHE ASP GLU LEU SEQRES 11 A 602 PRO THR ALA GLU GLU PHE TYR ASP TYR GLY GLU ARG ASN SEQRES 12 A 602 ASN VAL CYS PRO TYR GLU SER MET LYS ALA ALA LEU PRO SEQRES 13 A 602 ASP ALA ASP ILE VAL ILE ALA PRO TYR ALA TYR PHE LEU SEQRES 14 A 602 ASN ARG SER VAL ALA GLU LYS PHE LEU SER HIS TRP GLY SEQRES 15 A 602 VAL SER ARG ASN GLN ILE VAL ILE ILE LEU ASP GLU ALA SEQRES 16 A 602 HIS ASN LEU PRO ASP ILE GLY ARG SER ILE GLY SER PHE SEQRES 17 A 602 ARG ILE SER VAL GLU SER LEU ASN ARG ALA ASP ARG GLU SEQRES 18 A 602 ALA GLN ALA TYR GLY ASP PRO GLU LEU SER GLN LYS ILE SEQRES 19 A 602 HIS VAL SER ASP LEU ILE GLU MET ILE ARG SER ALA LEU SEQRES 20 A 602 GLN SER MET VAL SER GLU ARG CYS GLY LYS GLY ASP VAL SEQRES 21 A 602 ARG ILE ARG PHE GLN GLU PHE MET GLU TYR MET ARG ILE SEQRES 22 A 602 MET ASN LYS ARG SER GLU ARG GLU ILE ARG SER LEU LEU SEQRES 23 A 602 ASN TYR LEU TYR LEU PHE GLY GLU TYR VAL GLU ASN GLU SEQRES 24 A 602 LYS GLU LYS VAL GLY LYS VAL PRO PHE SER TYR CYS SER SEQRES 25 A 602 SER VAL ALA SER ARG ILE ILE ALA PHE SER ASP GLN ASP SEQRES 26 A 602 GLU GLU LYS TYR ALA ALA ILE LEU SER PRO GLU ASP GLY SEQRES 27 A 602 GLY TYR MET GLN ALA ALA CYS LEU ASP PRO SER GLY ILE SEQRES 28 A 602 LEU GLU VAL LEU LYS GLU SER LYS THR ILE HIS MET SER SEQRES 29 A 602 GLY THR LEU ASP PRO PHE ASP PHE TYR SER ASP ILE THR SEQRES 30 A 602 GLY PHE GLU ILE PRO PHE LYS LYS ILE GLY GLU ILE PHE SEQRES 31 A 602 PRO PRO GLU ASN ARG TYR ILE ALA TYR TYR ASP GLY VAL SEQRES 32 A 602 SER SER LYS TYR ASP THR LEU ASP GLU LYS GLU LEU ASP SEQRES 33 A 602 ARG MET ALA THR VAL ILE GLU ASP ILE ILE LEU LYS VAL SEQRES 34 A 602 LYS LYS ASN THR ILE VAL TYR PHE PRO SER TYR SER LEU SEQRES 35 A 602 MET ASP ARG VAL GLU ASN ARG VAL SER PHE GLU HIS MET SEQRES 36 A 602 LYS GLU TYR ARG GLY ILE ASP GLN LYS GLU LEU TYR SER SEQRES 37 A 602 MET LEU LYS LYS PHE ARG ARG ASP HIS GLY THR ILE PHE SEQRES 38 A 602 ALA VAL SER GLY GLY ARG LEU SER GLU GLY ILE ASN PHE SEQRES 39 A 602 PRO GLY ASN GLU LEU GLU MET ILE ILE LEU ALA GLY LEU SEQRES 40 A 602 PRO PHE PRO ARG PRO ASP ALA ILE ASN ARG SER LEU PHE SEQRES 41 A 602 ASP TYR TYR GLU ARG LYS TYR GLY LYS GLY TRP GLU TYR SEQRES 42 A 602 SER VAL VAL TYR PRO THR ALA ILE LYS ILE ARG GLN GLU SEQRES 43 A 602 ILE GLY ARG LEU ILE ARG SER ALA GLU ASP THR GLY ALA SEQRES 44 A 602 CYS VAL ILE LEU ASP LYS ARG ALA GLY GLN PHE ARG LYS SEQRES 45 A 602 PHE ILE PRO ASP MET LYS LYS THR SER ASP PRO ALA SER SEQRES 46 A 602 ASP ILE TYR ASN PHE PHE ILE SER ALA GLN ALA ARG GLU SEQRES 47 A 602 LYS TYR GLY ALA HET SF4 A1616 8 HET CA A1617 1 HETNAM CA CALCIUM ION HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 2 CA CA 2+ FORMUL 3 SF4 FE4 S4 2+ FORMUL 4 HOH *1(H2 O) HELIX 1 1 THR A 36 SER A 42 1 7 HELIX 2 2 THR A 60 SER A 76 1 17 HELIX 3 3 GLY A 87 CYS A 92 1 6 HELIX 4 4 LEU A 94 ASP A 99 1 6 HELIX 5 5 ASN A 105 GLY A 123 1 19 HELIX 6 6 ASN A 124 CYS A 128 5 5 HELIX 7 7 ASN A 132 ARG A 136 5 5 HELIX 8 8 SER A 137 GLU A 147 1 11 HELIX 9 9 THR A 150 ASN A 162 1 13 HELIX 10 10 CYS A 164 LEU A 173 1 10 HELIX 11 11 PRO A 174 ALA A 176 5 3 HELIX 12 12 TYR A 183 LEU A 187 1 5 HELIX 13 13 ASN A 188 GLY A 200 1 13 HELIX 14 14 GLU A 212 HIS A 214 5 3 HELIX 15 15 ASN A 215 SER A 225 1 11 HELIX 16 16 VAL A 230 TYR A 243 1 14 HELIX 17 17 HIS A 253 CYS A 273 1 21 HELIX 18 18 ARG A 281 LYS A 294 1 14 HELIX 19 19 SER A 296 GLY A 322 1 27 HELIX 20 20 SER A 327 ASP A 341 1 15 HELIX 21 21 PRO A 366 GLU A 371 1 6 HELIX 22 22 VAL A 372 SER A 376 5 5 HELIX 23 23 PRO A 387 GLY A 396 1 10 HELIX 24 24 PRO A 409 GLU A 411 5 3 HELIX 25 25 ASP A 429 LYS A 448 1 20 HELIX 26 26 SER A 457 VAL A 468 1 12 HELIX 27 27 ASP A 480 ASP A 494 1 15 HELIX 28 28 GLY A 504 GLU A 508 5 5 HELIX 29 29 ASP A 531 LYS A 544 1 14 HELIX 30 30 LYS A 547 VAL A 553 1 7 HELIX 31 31 VAL A 553 ILE A 569 1 17 HELIX 32 32 ALA A 585 LYS A 590 5 6 HELIX 33 33 ASP A 600 ARG A 615 1 16 SHEET 1 AA 7 ALA A 82 PRO A 84 0 SHEET 2 AA 7 ILE A 178 PRO A 182 1 O ILE A 178 N ILE A 83 SHEET 3 AA 7 LYS A 53 VAL A 58 1 O VAL A 54 N VAL A 179 SHEET 4 AA 7 ILE A 206 LEU A 210 1 O VAL A 207 N LEU A 55 SHEET 5 AA 7 LYS A 377 MET A 381 1 O LYS A 377 N ILE A 208 SHEET 6 AA 7 GLY A 24 LEU A 27 1 O VAL A 25 N HIS A 380 SHEET 7 AA 7 PHE A 401 LYS A 402 1 N LYS A 402 O ALA A 26 SHEET 1 AB 4 PHE A 226 SER A 229 0 SHEET 2 AB 4 TYR A 358 CYS A 363 -1 O MET A 359 N ILE A 228 SHEET 3 AB 4 TYR A 347 SER A 352 -1 O ALA A 348 N ALA A 362 SHEET 4 AB 4 VAL A 278 ILE A 280 -1 O VAL A 278 N LEU A 351 SHEET 1 AC 6 ILE A 498 VAL A 501 0 SHEET 2 AC 6 THR A 451 PHE A 455 1 O THR A 451 N ILE A 498 SHEET 3 AC 6 MET A 519 LEU A 522 1 O MET A 519 N ILE A 452 SHEET 4 AC 6 GLY A 576 LEU A 581 1 O ALA A 577 N ILE A 520 SHEET 5 AC 6 ARG A 413 TYR A 418 1 O TYR A 414 N CYS A 578 SHEET 6 AC 6 LYS A 596 THR A 598 1 O LYS A 596 N TYR A 417 LINK FE1 SF4 A1616 SG CYS A 92 1555 1555 2.36 LINK FE4 SF4 A1616 SG CYS A 164 1555 1555 2.25 LINK FE3 SF4 A1616 SG CYS A 113 1555 1555 2.34 LINK FE2 SF4 A1616 SG CYS A 128 1555 1555 2.48 LINK CA CA A1617 OE2 GLU A 315 1555 1555 2.60 LINK CA CA A1617 OE1 GLU A 312 1555 1555 2.43 LINK CA CA A1617 OE2 GLU A 312 1555 1555 3.12 LINK CA CA A1617 ND2 ASN A 162 1555 5455 2.23 SITE 1 AC1 7 ARG A 88 CYS A 92 ILE A 93 LEU A 94 SITE 2 AC1 7 CYS A 113 CYS A 128 CYS A 164 SITE 1 AC2 6 GLU A 107 LYS A 111 GLU A 159 ASN A 162 SITE 2 AC2 6 GLU A 312 GLU A 315 CRYST1 78.890 78.890 174.040 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012676 0.007318 0.000000 0.00000 SCALE2 0.000000 0.014637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005746 0.00000