HEADER TRANSFERASE 23-APR-08 2VSI TITLE SYNTHESIS OF CDP-ACTIVATED RIBITOL FOR TEICHOIC ACID PRECURSORS IN TITLE 2 STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TARI; COMPND 5 EC: 2.7.7.60 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: R36A; SOURCE 5 ATCC: 12214 KEYWDS SPR1149 TARI CDP RIBITOL STREPTOCOCCUS PNEUMONIAE, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, TRANSFERASE, ISOPRENE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.BAUR,J.MARLES-WRIGHT,S.BUCKENMAIER,R.J.LEWIS,W.VOLLMER REVDAT 4 13-DEC-23 2VSI 1 LINK REVDAT 3 04-APR-18 2VSI 1 REMARK REVDAT 2 10-FEB-09 2VSI 1 JRNL REMARK REVDAT 1 30-DEC-08 2VSI 0 JRNL AUTH S.BAUR,J.MARLES-WRIGHT,S.BUCKENMAIER,R.J.LEWIS,W.VOLLMER JRNL TITL SYNTHESIS OF CDP-ACTIVATED RIBITOL FOR TEICHOIC ACID JRNL TITL 2 PRECURSORS IN STREPTOCOCCUS PNEUMONIAE. JRNL REF J.BACTERIOL. V. 191 1200 2009 JRNL REFN ISSN 0021-9193 JRNL PMID 19074383 JRNL DOI 10.1128/JB.01120-08 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 12215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 906 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : -1.99000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.353 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.687 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3675 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4991 ; 1.193 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 5.543 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;35.435 ;25.159 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 663 ;17.262 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.458 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2664 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1665 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2510 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 137 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.163 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2312 ; 0.258 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3677 ; 0.459 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1516 ; 0.590 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 0.947 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5348 -18.4417 -5.4510 REMARK 3 T TENSOR REMARK 3 T11: -0.1037 T22: -0.3305 REMARK 3 T33: -0.1083 T12: 0.0057 REMARK 3 T13: -0.0245 T23: -0.1294 REMARK 3 L TENSOR REMARK 3 L11: 2.9695 L22: 2.0161 REMARK 3 L33: 3.5578 L12: 0.4536 REMARK 3 L13: 0.1393 L23: -0.4612 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: 0.3314 S13: -0.1789 REMARK 3 S21: -0.1036 S22: -0.0629 S23: 0.0340 REMARK 3 S31: -0.0389 S32: 0.1335 S33: 0.0508 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6649 -21.5977 18.2146 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.0836 REMARK 3 T33: -0.1519 T12: -0.0200 REMARK 3 T13: -0.0055 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 8.7906 L22: 5.8843 REMARK 3 L33: 3.3087 L12: -4.2363 REMARK 3 L13: -4.9414 L23: 3.8098 REMARK 3 S TENSOR REMARK 3 S11: -0.1089 S12: -1.3816 S13: -0.5398 REMARK 3 S21: 0.5952 S22: -0.5098 S23: 0.0918 REMARK 3 S31: 0.3805 S32: -0.2499 S33: 0.6186 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6433 -21.4774 2.2566 REMARK 3 T TENSOR REMARK 3 T11: -0.0253 T22: -0.4061 REMARK 3 T33: -0.0556 T12: 0.0380 REMARK 3 T13: 0.0316 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 4.8052 L22: 2.0844 REMARK 3 L33: 2.3071 L12: 0.0652 REMARK 3 L13: 0.3168 L23: -0.0796 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.0398 S13: -0.6132 REMARK 3 S21: 0.3447 S22: -0.0360 S23: 0.3107 REMARK 3 S31: 0.1425 S32: -0.1474 S33: 0.0719 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8369 -5.2038 37.6658 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.3560 REMARK 3 T33: -0.0900 T12: -0.0288 REMARK 3 T13: 0.0627 T23: -0.2763 REMARK 3 L TENSOR REMARK 3 L11: 5.7521 L22: 1.9253 REMARK 3 L33: 6.3448 L12: 2.5833 REMARK 3 L13: 0.8507 L23: -0.5205 REMARK 3 S TENSOR REMARK 3 S11: 0.2307 S12: -1.1371 S13: 0.5136 REMARK 3 S21: 0.3074 S22: -0.5003 S23: 0.2806 REMARK 3 S31: 0.0360 S32: -0.4146 S33: 0.2696 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 140 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): -19.3831 -23.1864 11.8913 REMARK 3 T TENSOR REMARK 3 T11: -0.0587 T22: 0.0063 REMARK 3 T33: -0.0054 T12: -0.1350 REMARK 3 T13: 0.0309 T23: 0.1132 REMARK 3 L TENSOR REMARK 3 L11: 1.7204 L22: 4.8447 REMARK 3 L33: 10.1428 L12: -2.8870 REMARK 3 L13: -4.1773 L23: 7.0099 REMARK 3 S TENSOR REMARK 3 S11: 0.2619 S12: -1.2881 S13: -0.3752 REMARK 3 S21: -0.2345 S22: -0.4269 S23: -0.0092 REMARK 3 S31: 0.0920 S32: 0.1062 S33: 0.1650 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 168 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1352 -15.2258 29.4847 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.2606 REMARK 3 T33: -0.0863 T12: -0.0387 REMARK 3 T13: 0.0430 T23: -0.1047 REMARK 3 L TENSOR REMARK 3 L11: 7.3832 L22: 0.6641 REMARK 3 L33: 3.6594 L12: 1.0827 REMARK 3 L13: -0.0290 L23: 0.7264 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: -1.1552 S13: -0.4994 REMARK 3 S21: 0.1625 S22: -0.1439 S23: -0.0580 REMARK 3 S31: 0.5888 S32: -0.2643 S33: 0.2749 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2VSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290036022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 140 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU R-AXIS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 60.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1VPA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 6.75 35 % V/W PEG 300 REMARK 280 200 MM CACL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.79000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.79000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.47000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.19000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.47000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.19000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.79000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.47000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.19000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.79000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.47000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.19000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 ARG A 14 REMARK 465 MET A 15 REMARK 465 GLY A 16 REMARK 465 ILE A 17 REMARK 465 SER A 18 REMARK 465 ASN A 19 REMARK 465 LEU A 20 REMARK 465 LYS A 234 REMARK 465 ASP A 235 REMARK 465 ARG B 14 REMARK 465 MET B 15 REMARK 465 GLY B 16 REMARK 465 ILE B 17 REMARK 465 SER B 18 REMARK 465 ASN B 19 REMARK 465 GLU B 233 REMARK 465 LYS B 234 REMARK 465 ASP B 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 100 CZ ARG B 100 NH1 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 100 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 149 107.90 -160.15 REMARK 500 GLN A 168 -169.84 -126.99 REMARK 500 ASN A 216 46.11 -68.99 REMARK 500 ALA B 8 36.69 -142.82 REMARK 500 PRO B 21 138.95 -32.43 REMARK 500 ASP B 29 -28.93 -141.92 REMARK 500 GLU B 47 -78.92 -50.47 REMARK 500 TYR B 72 30.43 -82.97 REMARK 500 PRO B 101 130.12 -37.94 REMARK 500 PRO B 104 -23.58 -38.69 REMARK 500 PHE B 117 32.09 -96.87 REMARK 500 ASP B 157 133.84 177.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDF A1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDF B1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1234 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VSH RELATED DB: PDB REMARK 900 SYNTHESIS OF CDP-ACTIVATED RIBITOL FOR TEICHOIC ACID PRECURSORS IN REMARK 900 STREPTOCOCCUS PNEUMONIAE DBREF 2VSI A 0 0 PDB 2VSI 2VSI 0 0 DBREF 2VSI A 1 235 UNP A5MSS9 A5MSS9_STRPN 1 235 DBREF 2VSI B 0 0 PDB 2VSI 2VSI 0 0 DBREF 2VSI B 1 235 UNP A5MSS9 A5MSS9_STRPN 1 235 SEQRES 1 A 236 HIS MET ILE TYR ALA GLY ILE LEU ALA GLY GLY THR GLY SEQRES 2 A 236 THR ARG MET GLY ILE SER ASN LEU PRO LYS GLN PHE LEU SEQRES 3 A 236 GLU LEU GLY ASP ARG PRO ILE LEU ILE HIS THR ILE GLU SEQRES 4 A 236 LYS PHE VAL LEU GLU PRO SER ILE GLU LYS ILE VAL VAL SEQRES 5 A 236 GLY VAL HIS GLY ASP TRP VAL SER HIS ALA GLU ASP LEU SEQRES 6 A 236 VAL ASP LYS TYR LEU PRO LEU TYR LYS GLU ARG ILE ILE SEQRES 7 A 236 ILE THR LYS GLY GLY ALA ASP ARG ASN THR SER ILE LYS SEQRES 8 A 236 ASN ILE ILE GLU ALA ILE ASP ALA TYR ARG PRO LEU THR SEQRES 9 A 236 PRO GLU ASP ILE VAL VAL THR HIS ASP SER VAL ARG PRO SEQRES 10 A 236 PHE ILE THR LEU ARG MET ILE GLN ASP ASN ILE GLN LEU SEQRES 11 A 236 ALA GLN ASN HIS ASP ALA VAL ASP THR VAL VAL GLU ALA SEQRES 12 A 236 VAL ASP THR ILE VAL GLU SER THR ASN GLY GLN PHE ILE SEQRES 13 A 236 THR ASP ILE PRO ASN ARG ALA HIS LEU TYR GLN GLY GLN SEQRES 14 A 236 THR PRO GLN THR PHE ARG CYS LYS ASP PHE MET ASP LEU SEQRES 15 A 236 TYR GLY SER LEU SER ASP GLU GLU LYS GLU ILE LEU THR SEQRES 16 A 236 ASP ALA CYS LYS ILE PHE VAL ILE LYS GLY LYS ASP VAL SEQRES 17 A 236 ALA LEU ALA LYS GLY GLU TYR SER ASN LEU LYS ILE THR SEQRES 18 A 236 THR VAL THR ASP LEU LYS ILE ALA LYS SER MET ILE GLU SEQRES 19 A 236 LYS ASP SEQRES 1 B 236 HIS MET ILE TYR ALA GLY ILE LEU ALA GLY GLY THR GLY SEQRES 2 B 236 THR ARG MET GLY ILE SER ASN LEU PRO LYS GLN PHE LEU SEQRES 3 B 236 GLU LEU GLY ASP ARG PRO ILE LEU ILE HIS THR ILE GLU SEQRES 4 B 236 LYS PHE VAL LEU GLU PRO SER ILE GLU LYS ILE VAL VAL SEQRES 5 B 236 GLY VAL HIS GLY ASP TRP VAL SER HIS ALA GLU ASP LEU SEQRES 6 B 236 VAL ASP LYS TYR LEU PRO LEU TYR LYS GLU ARG ILE ILE SEQRES 7 B 236 ILE THR LYS GLY GLY ALA ASP ARG ASN THR SER ILE LYS SEQRES 8 B 236 ASN ILE ILE GLU ALA ILE ASP ALA TYR ARG PRO LEU THR SEQRES 9 B 236 PRO GLU ASP ILE VAL VAL THR HIS ASP SER VAL ARG PRO SEQRES 10 B 236 PHE ILE THR LEU ARG MET ILE GLN ASP ASN ILE GLN LEU SEQRES 11 B 236 ALA GLN ASN HIS ASP ALA VAL ASP THR VAL VAL GLU ALA SEQRES 12 B 236 VAL ASP THR ILE VAL GLU SER THR ASN GLY GLN PHE ILE SEQRES 13 B 236 THR ASP ILE PRO ASN ARG ALA HIS LEU TYR GLN GLY GLN SEQRES 14 B 236 THR PRO GLN THR PHE ARG CYS LYS ASP PHE MET ASP LEU SEQRES 15 B 236 TYR GLY SER LEU SER ASP GLU GLU LYS GLU ILE LEU THR SEQRES 16 B 236 ASP ALA CYS LYS ILE PHE VAL ILE LYS GLY LYS ASP VAL SEQRES 17 B 236 ALA LEU ALA LYS GLY GLU TYR SER ASN LEU LYS ILE THR SEQRES 18 B 236 THR VAL THR ASP LEU LYS ILE ALA LYS SER MET ILE GLU SEQRES 19 B 236 LYS ASP HET CDF A1234 25 HET CDF B1233 25 HET CA B1234 1 HETNAM CDF 4-AMINO-1-{5-O-[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]- HETNAM 2 CDF ALPHA-D-ARABINOFURANOSYL}PYRIMIDIN-2(1H)-ONE HETNAM CA CALCIUM ION FORMUL 3 CDF 2(C9 H15 N3 O11 P2) FORMUL 5 CA CA 2+ FORMUL 6 HOH *10(H2 O) HELIX 1 1 PRO A 21 PHE A 24 5 4 HELIX 2 2 ILE A 32 LEU A 42 1 11 HELIX 3 3 TRP A 57 LEU A 69 1 13 HELIX 4 4 PRO A 70 GLU A 74 5 5 HELIX 5 5 ASP A 84 ARG A 100 1 17 HELIX 6 6 THR A 119 ALA A 130 1 12 HELIX 7 7 CYS A 175 TYR A 182 1 8 HELIX 8 8 SER A 186 LEU A 193 1 8 HELIX 9 9 ASP A 195 LYS A 203 1 9 HELIX 10 10 THR A 221 ILE A 232 1 12 HELIX 11 11 ILE B 32 GLU B 43 1 12 HELIX 12 12 HIS B 54 ASP B 56 5 3 HELIX 13 13 TRP B 57 LEU B 69 1 13 HELIX 14 14 PRO B 70 GLU B 74 5 5 HELIX 15 15 ASP B 84 ARG B 100 1 17 HELIX 16 16 THR B 119 GLN B 131 1 13 HELIX 17 17 ASN B 160 ALA B 162 5 3 HELIX 18 18 CYS B 175 LEU B 185 1 11 HELIX 19 19 GLU B 188 LEU B 193 1 6 HELIX 20 20 ASP B 195 LYS B 203 1 9 HELIX 21 21 THR B 221 ILE B 232 1 12 SHEET 1 AA 7 ILE A 76 LYS A 80 0 SHEET 2 AA 7 ILE A 49 VAL A 53 1 O ILE A 49 N ILE A 77 SHEET 3 AA 7 ILE A 2 ALA A 8 1 O ALA A 4 N VAL A 50 SHEET 4 AA 7 ILE A 107 ASP A 112 1 O ILE A 107 N TYR A 3 SHEET 5 AA 7 LEU A 164 ARG A 174 -1 O GLN A 171 N THR A 110 SHEET 6 AA 7 ALA A 135 GLU A 141 -1 O VAL A 136 N THR A 172 SHEET 7 AA 7 VAL A 207 LYS A 211 1 O ALA A 208 N ASP A 137 SHEET 1 AB 6 ILE A 76 LYS A 80 0 SHEET 2 AB 6 ILE A 49 VAL A 53 1 O ILE A 49 N ILE A 77 SHEET 3 AB 6 ILE A 2 ALA A 8 1 O ALA A 4 N VAL A 50 SHEET 4 AB 6 ILE A 107 ASP A 112 1 O ILE A 107 N TYR A 3 SHEET 5 AB 6 LEU A 164 ARG A 174 -1 O GLN A 171 N THR A 110 SHEET 6 AB 6 ILE B 146 GLU B 148 -1 O VAL B 147 N TYR A 165 SHEET 1 AC 2 GLU A 26 LEU A 27 0 SHEET 2 AC 2 ARG A 30 PRO A 31 -1 O ARG A 30 N LEU A 27 SHEET 1 AD 6 ILE A 146 GLU A 148 0 SHEET 2 AD 6 LEU B 164 ARG B 174 -1 O TYR B 165 N VAL A 147 SHEET 3 AD 6 ILE B 107 ASP B 112 -1 O VAL B 108 N PHE B 173 SHEET 4 AD 6 ILE B 2 LEU B 7 1 O TYR B 3 N VAL B 109 SHEET 5 AD 6 ILE B 49 VAL B 53 1 O VAL B 50 N ILE B 6 SHEET 6 AD 6 ILE B 76 LYS B 80 1 O ILE B 77 N VAL B 51 SHEET 1 AE 4 ILE A 146 GLU A 148 0 SHEET 2 AE 4 LEU B 164 ARG B 174 -1 O TYR B 165 N VAL A 147 SHEET 3 AE 4 ALA B 135 GLU B 141 -1 O VAL B 136 N THR B 172 SHEET 4 AE 4 VAL B 207 LYS B 211 1 O ALA B 208 N ASP B 137 SHEET 1 BA 2 GLU B 26 LEU B 27 0 SHEET 2 BA 2 ARG B 30 PRO B 31 -1 O ARG B 30 N LEU B 27 LINK OE2 GLU B 105 CA CA B1234 1555 1555 2.80 CISPEP 1 THR A 169 PRO A 170 0 8.65 CISPEP 2 THR B 169 PRO B 170 0 5.43 SITE 1 AC1 13 LEU A 7 ALA A 8 GLY A 9 GLY A 10 SITE 2 AC1 13 GLY A 82 ALA A 83 ASP A 84 ARG A 85 SITE 3 AC1 13 SER A 88 ASP A 112 SER A 113 VAL A 114 SITE 4 AC1 13 LYS A 218 SITE 1 AC2 14 LEU B 7 ALA B 8 GLY B 9 GLN B 23 SITE 2 AC2 14 GLY B 82 ALA B 83 ASP B 84 ARG B 85 SITE 3 AC2 14 SER B 88 ASP B 112 SER B 113 VAL B 114 SITE 4 AC2 14 LYS B 218 THR B 220 SITE 1 AC3 1 GLU B 105 CRYST1 80.940 92.380 143.580 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012355 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006965 0.00000