data_2VSL # _entry.id 2VSL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VSL PDBE EBI-35878 WWPDB D_1290035878 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1F9X unspecified 'AVERAGE NMR SOLUTION STRUCTURE OF THE BIR- 3 DOMAIN OF XIAP' PDB 1KMC unspecified 'CRYSTAL STRUCTURE OF THE CASPASE-7 / XIAP- BIR2 COMPLEX' PDB 1G73 unspecified 'CRYSTAL STRUCTURE OF SMAC BOUND TO XIAP- BIR3 DOMAIN' PDB 1I4O unspecified 'CRYSTAL STRUCTURE OF THE XIAP/CASPASE-7 COMPLEX' PDB 2JK7 unspecified 'XIAP BIR3 BOUND TO A SMAC MIMETIC' PDB 1TFQ unspecified 'NMR STRUCTURE OF AN ANTAGONISTS OF THE XIAP-CASPASE-9INTERACTION COMPLEXED TO THE BIR3 DOMAIN OF XIAP' PDB 1TFT unspecified 'NMR STRUCTURE OF AN ANTAGONISTS OF THE XIAP-CASPASE-9INTERACTION COMPLEXED TO THE BIR3 DOMAIN OF XIAP' PDB 1C9Q unspecified 'AVERAGE NMR SOLUTION STRUCTURE OF THE BIR- 2 DOMAIN OF XIAP' PDB 1NW9 unspecified 'STRUCTURE OF CASPASE-9 IN AN INHIBITORY COMPLEX WITH XIAP-BIR3' PDB 1I3O unspecified 'CRYSTAL STRUCTURE OF THE COMPLEX OF XIAP- BIR2 AND CASPASE 3' PDB 1G3F unspecified 'NMR STRUCTURE OF A 9 RESIDUE PEPTIDE FROM SMAC/DIABLOCOMPLEXED TO THE BIR3 DOMAIN OF XIAP' PDB 1I51 unspecified 'CRYSTAL STRUCTURE OF CASPASE-7 COMPLEXED WITH XIAP' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VSL _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-04-24 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Meagher, J.L.' 1 'Stuckey, J.A.' 2 # _citation.id primary _citation.title 'Interaction of a Cyclic, Bivalent Smac Mimetic with the X-Linked Inhibitor of Apoptosis Protein.' _citation.journal_abbrev Biochemistry _citation.journal_volume 47 _citation.page_first 9811 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18717598 _citation.pdbx_database_id_DOI 10.1021/BI800785Y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nikolovska-Coleska, Z.' 1 primary 'Meagher, J.L.' 2 primary 'Jiang, S.' 3 primary 'Yang, C.Y.' 4 primary 'Qiu, S.' 5 primary 'Roller, P.P.' 6 primary 'Stuckey, J.A.' 7 primary 'Wang, S.' 8 # _cell.entry_id 2VSL _cell.length_a 102.478 _cell.length_b 102.478 _cell.length_c 65.218 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VSL _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4' 11089.397 1 6.3.2.- ? 'BIR3 DOMAIN, RESIDUES 250-345' ? 2 polymer syn 'PEPTIDE (MAA-LYS-PRO-PHE)' 476.588 1 ? ? ? ? 3 non-polymer syn 'POLYETHYLENE GLYCOL (N=34)' 1529.829 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 60 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;XIAP, E3 UBIQUITIN-PROTEIN LIGASE XIAP, INHIBITOR OF APOPTOSIS PROTEIN 3, X- LINKED INHIBITOR OF APOPTOSIS PROTEIN, X-LINKED IAP, IAP-LIKE PROTEIN, HILP ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;FPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKY LLEQKGQEYINNIHLT ; ;FPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKY LLEQKGQEYINNIHLT ; A ? 2 'polypeptide(L)' no yes '(MAA)KPF' AKPF B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 PRO n 1 3 ASN n 1 4 SER n 1 5 THR n 1 6 ASN n 1 7 LEU n 1 8 PRO n 1 9 ARG n 1 10 ASN n 1 11 PRO n 1 12 SER n 1 13 MET n 1 14 ALA n 1 15 ASP n 1 16 TYR n 1 17 GLU n 1 18 ALA n 1 19 ARG n 1 20 ILE n 1 21 PHE n 1 22 THR n 1 23 PHE n 1 24 GLY n 1 25 THR n 1 26 TRP n 1 27 ILE n 1 28 TYR n 1 29 SER n 1 30 VAL n 1 31 ASN n 1 32 LYS n 1 33 GLU n 1 34 GLN n 1 35 LEU n 1 36 ALA n 1 37 ARG n 1 38 ALA n 1 39 GLY n 1 40 PHE n 1 41 TYR n 1 42 ALA n 1 43 LEU n 1 44 GLY n 1 45 GLU n 1 46 GLY n 1 47 ASP n 1 48 LYS n 1 49 VAL n 1 50 LYS n 1 51 CYS n 1 52 PHE n 1 53 HIS n 1 54 CYS n 1 55 GLY n 1 56 GLY n 1 57 GLY n 1 58 LEU n 1 59 THR n 1 60 ASP n 1 61 TRP n 1 62 LYS n 1 63 PRO n 1 64 SER n 1 65 GLU n 1 66 ASP n 1 67 PRO n 1 68 TRP n 1 69 GLU n 1 70 GLN n 1 71 HIS n 1 72 ALA n 1 73 LYS n 1 74 TRP n 1 75 TYR n 1 76 PRO n 1 77 GLY n 1 78 CYS n 1 79 LYS n 1 80 TYR n 1 81 LEU n 1 82 LEU n 1 83 GLU n 1 84 GLN n 1 85 LYS n 1 86 GLY n 1 87 GLN n 1 88 GLU n 1 89 TYR n 1 90 ILE n 1 91 ASN n 1 92 ASN n 1 93 ILE n 1 94 HIS n 1 95 LEU n 1 96 THR n 2 1 MAA n 2 2 LYS n 2 3 PRO n 2 4 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PET28 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SYNTHETIC CONSTRUCT' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP BIRC4_HUMAN 1 ? ? P98170 ? 2 PDB 2VSL 2 ? ? 2VSL ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VSL A 1 ? 96 ? P98170 250 ? 345 ? 250 345 2 2 2VSL B 1 ? 4 ? 2VSL 1 ? 4 ? 1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 15P non-polymer . 'POLYETHYLENE GLYCOL (N=34)' 'PEG 1500' 'C69 H140 O35' 1529.829 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAA 'L-peptide linking' n N-methyl-L-alanine ? 'C4 H9 N O2' 103.120 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2VSL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.46 _exptl_crystal.density_percent_sol 64.20 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.4 M NACL, 5% PEG 6000, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-11-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.96859 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 32-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 32-ID _diffrn_source.pdbx_wavelength 0.96859 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VSL _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.74 _reflns.d_resolution_high 2.10 _reflns.number_obs 10431 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.00 _reflns.B_iso_Wilson_estimate 20.6 _reflns.pdbx_redundancy 14.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.19 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 20.00 _reflns_shell.pdbx_redundancy 14.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VSL _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10423 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1764553.24 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.74 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.226 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1077 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 35.1 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.394327 _refine.solvent_model_param_bsol 47.4453 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE B CHAIN IS A CYCLIC DIMERIC PEPTIDE WITH HALF OF IT IN THE ASYMMETRIC UNIT. THE FULL STRUCTURE IS GENERATED VIA CRYSTALLOGRAPHIC TWO-FOLD AXIS. ; _refine.pdbx_starting_model 'PREVIOUSLY SOLVED, UNPUBLISHED STRUCTURE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2VSL _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 0.17 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.22 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 817 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 883 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 29.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.74 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.51 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.55 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.27 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.55 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1514 _refine_ls_shell.R_factor_R_work 0.244 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.279 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 10.4 _refine_ls_shell.number_reflns_R_free 176 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 2 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 PEG.PARAM PEG.TOP 'X-RAY DIFFRACTION' 4 PROTEIN_REP.PARAM PROTEIN_REP.TOP. # _struct.entry_id 2VSL _struct.title 'Crystal Structure of XIAP BIR3 with a Bivalent Smac Mimetic' _struct.pdbx_descriptor 'BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4 (E.C.6.3.2.-), PEPTIDE (MAA-LYS-PRO-PHE)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VSL _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;ZINC-FINGER, POLYMORPHISM, SMAC MIMETIC, METAL-BINDING, UBL CONJUGATION PATHWAY, THIOL PROTEASE INHIBITOR, PHOSPHOPROTEIN, UBL CONJUGATION, PROTEASE INHIBITOR, BIR3, ZINC, XIAP, LIGASE, APOPTOSIS, CYTOPLASM, HYDROLASE INHIBITOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 10 ? ALA A 14 ? ASN A 259 ALA A 263 5 ? 5 HELX_P HELX_P2 2 ASP A 15 ? THR A 22 ? ASP A 264 THR A 271 1 ? 8 HELX_P HELX_P3 3 ASN A 31 ? ALA A 38 ? ASN A 280 ALA A 287 1 ? 8 HELX_P HELX_P4 4 ASP A 66 ? TYR A 75 ? ASP A 315 TYR A 324 1 ? 10 HELX_P HELX_P5 5 CYS A 78 ? HIS A 94 ? CYS A 327 HIS A 343 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 51 SG ? ? A ZN 1347 A CYS 300 1_555 ? ? ? ? ? ? ? 2.326 ? metalc2 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 78 SG ? ? A ZN 1347 A CYS 327 1_555 ? ? ? ? ? ? ? 2.417 ? metalc3 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 54 SG ? ? A ZN 1347 A CYS 303 1_555 ? ? ? ? ? ? ? 2.192 ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 A HIS 71 NE2 ? ? A ZN 1347 A HIS 320 1_555 ? ? ? ? ? ? ? 2.117 ? covale1 covale ? ? B MAA 1 C ? ? ? 1_555 B LYS 2 N ? ? B MAA 1 B LYS 2 1_555 ? ? ? ? ? ? ? 1.324 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 1 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 250 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 2 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 251 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.07 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 40 ? ALA A 42 ? PHE A 289 ALA A 291 AA 2 VAL A 49 ? CYS A 51 ? VAL A 298 CYS A 300 AA 3 GLY A 57 ? LEU A 58 ? GLY A 306 LEU A 307 AA 4 PRO B 3 ? PHE B 4 ? PRO B 3 PHE B 4 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 41 ? N TYR A 290 O LYS A 50 ? O LYS A 299 AA 2 3 N VAL A 49 ? N VAL A 298 O LEU A 58 ? O LEU A 307 AA 3 4 N GLY A 57 ? N GLY A 306 O PHE B 4 ? O PHE B 4 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE 15P A 1346' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1347' AC3 Software ? ? ? ? 15 'BINDING SITE FOR CHAIN B OF PEPTIDE (MAA-LYS-PRO-PHE)' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 PRO A 2 ? PRO A 251 . ? 7_556 ? 2 AC1 6 LYS A 73 ? LYS A 322 . ? 1_555 ? 3 AC1 6 TRP A 74 ? TRP A 323 . ? 7_556 ? 4 AC1 6 TRP A 74 ? TRP A 323 . ? 1_555 ? 5 AC1 6 PRO A 76 ? PRO A 325 . ? 7_556 ? 6 AC1 6 HOH E . ? HOH A 2047 . ? 7_556 ? 7 AC2 4 CYS A 51 ? CYS A 300 . ? 1_555 ? 8 AC2 4 CYS A 54 ? CYS A 303 . ? 1_555 ? 9 AC2 4 HIS A 71 ? HIS A 320 . ? 1_555 ? 10 AC2 4 CYS A 78 ? CYS A 327 . ? 1_555 ? 11 AC3 15 LYS A 48 ? LYS A 297 . ? 1_555 ? 12 AC3 15 VAL A 49 ? VAL A 298 . ? 1_555 ? 13 AC3 15 LYS A 50 ? LYS A 299 . ? 1_555 ? 14 AC3 15 GLY A 57 ? GLY A 306 . ? 1_555 ? 15 AC3 15 LEU A 58 ? LEU A 307 . ? 1_555 ? 16 AC3 15 THR A 59 ? THR A 308 . ? 1_555 ? 17 AC3 15 ASP A 60 ? ASP A 309 . ? 1_555 ? 18 AC3 15 LYS A 62 ? LYS A 311 . ? 1_555 ? 19 AC3 15 GLU A 65 ? GLU A 314 . ? 1_555 ? 20 AC3 15 GLN A 70 ? GLN A 319 . ? 1_555 ? 21 AC3 15 TRP A 74 ? TRP A 323 . ? 1_555 ? 22 AC3 15 TYR A 75 ? TYR A 324 . ? 1_555 ? 23 AC3 15 HOH E . ? HOH A 2044 . ? 1_555 ? 24 AC3 15 HOH F . ? HOH B 2001 . ? 1_555 ? 25 AC3 15 HOH F . ? HOH B 2002 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VSL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VSL _atom_sites.fract_transf_matrix[1][1] 0.009758 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009758 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015333 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 250 250 PHE PHE A . n A 1 2 PRO 2 251 251 PRO PRO A . n A 1 3 ASN 3 252 252 ASN ASN A . n A 1 4 SER 4 253 253 SER SER A . n A 1 5 THR 5 254 254 THR THR A . n A 1 6 ASN 6 255 255 ASN ASN A . n A 1 7 LEU 7 256 256 LEU LEU A . n A 1 8 PRO 8 257 257 PRO PRO A . n A 1 9 ARG 9 258 258 ARG ARG A . n A 1 10 ASN 10 259 259 ASN ASN A . n A 1 11 PRO 11 260 260 PRO PRO A . n A 1 12 SER 12 261 261 SER SER A . n A 1 13 MET 13 262 262 MET MET A . n A 1 14 ALA 14 263 263 ALA ALA A . n A 1 15 ASP 15 264 264 ASP ASP A . n A 1 16 TYR 16 265 265 TYR TYR A . n A 1 17 GLU 17 266 266 GLU GLU A . n A 1 18 ALA 18 267 267 ALA ALA A . n A 1 19 ARG 19 268 268 ARG ARG A . n A 1 20 ILE 20 269 269 ILE ILE A . n A 1 21 PHE 21 270 270 PHE PHE A . n A 1 22 THR 22 271 271 THR THR A . n A 1 23 PHE 23 272 272 PHE PHE A . n A 1 24 GLY 24 273 273 GLY GLY A . n A 1 25 THR 25 274 274 THR THR A . n A 1 26 TRP 26 275 275 TRP TRP A . n A 1 27 ILE 27 276 276 ILE ILE A . n A 1 28 TYR 28 277 277 TYR TYR A . n A 1 29 SER 29 278 278 SER SER A . n A 1 30 VAL 30 279 279 VAL VAL A . n A 1 31 ASN 31 280 280 ASN ASN A . n A 1 32 LYS 32 281 281 LYS LYS A . n A 1 33 GLU 33 282 282 GLU GLU A . n A 1 34 GLN 34 283 283 GLN GLN A . n A 1 35 LEU 35 284 284 LEU LEU A . n A 1 36 ALA 36 285 285 ALA ALA A . n A 1 37 ARG 37 286 286 ARG ARG A . n A 1 38 ALA 38 287 287 ALA ALA A . n A 1 39 GLY 39 288 288 GLY GLY A . n A 1 40 PHE 40 289 289 PHE PHE A . n A 1 41 TYR 41 290 290 TYR TYR A . n A 1 42 ALA 42 291 291 ALA ALA A . n A 1 43 LEU 43 292 292 LEU LEU A . n A 1 44 GLY 44 293 293 GLY GLY A . n A 1 45 GLU 45 294 294 GLU GLU A . n A 1 46 GLY 46 295 295 GLY GLY A . n A 1 47 ASP 47 296 296 ASP ASP A . n A 1 48 LYS 48 297 297 LYS LYS A . n A 1 49 VAL 49 298 298 VAL VAL A . n A 1 50 LYS 50 299 299 LYS LYS A . n A 1 51 CYS 51 300 300 CYS CYS A . n A 1 52 PHE 52 301 301 PHE PHE A . n A 1 53 HIS 53 302 302 HIS HIS A . n A 1 54 CYS 54 303 303 CYS CYS A . n A 1 55 GLY 55 304 304 GLY GLY A . n A 1 56 GLY 56 305 305 GLY GLY A . n A 1 57 GLY 57 306 306 GLY GLY A . n A 1 58 LEU 58 307 307 LEU LEU A . n A 1 59 THR 59 308 308 THR THR A . n A 1 60 ASP 60 309 309 ASP ASP A . n A 1 61 TRP 61 310 310 TRP TRP A . n A 1 62 LYS 62 311 311 LYS LYS A . n A 1 63 PRO 63 312 312 PRO PRO A . n A 1 64 SER 64 313 313 SER SER A . n A 1 65 GLU 65 314 314 GLU GLU A . n A 1 66 ASP 66 315 315 ASP ASP A . n A 1 67 PRO 67 316 316 PRO PRO A . n A 1 68 TRP 68 317 317 TRP TRP A . n A 1 69 GLU 69 318 318 GLU GLU A . n A 1 70 GLN 70 319 319 GLN GLN A . n A 1 71 HIS 71 320 320 HIS HIS A . n A 1 72 ALA 72 321 321 ALA ALA A . n A 1 73 LYS 73 322 322 LYS LYS A . n A 1 74 TRP 74 323 323 TRP TRP A . n A 1 75 TYR 75 324 324 TYR TYR A . n A 1 76 PRO 76 325 325 PRO PRO A . n A 1 77 GLY 77 326 326 GLY GLY A . n A 1 78 CYS 78 327 327 CYS CYS A . n A 1 79 LYS 79 328 328 LYS LYS A . n A 1 80 TYR 80 329 329 TYR TYR A . n A 1 81 LEU 81 330 330 LEU LEU A . n A 1 82 LEU 82 331 331 LEU LEU A . n A 1 83 GLU 83 332 332 GLU GLU A . n A 1 84 GLN 84 333 333 GLN GLN A . n A 1 85 LYS 85 334 334 LYS LYS A . n A 1 86 GLY 86 335 335 GLY GLY A . n A 1 87 GLN 87 336 336 GLN GLN A . n A 1 88 GLU 88 337 337 GLU GLU A . n A 1 89 TYR 89 338 338 TYR TYR A . n A 1 90 ILE 90 339 339 ILE ILE A . n A 1 91 ASN 91 340 340 ASN ASN A . n A 1 92 ASN 92 341 341 ASN ASN A . n A 1 93 ILE 93 342 342 ILE ILE A . n A 1 94 HIS 94 343 343 HIS HIS A . n A 1 95 LEU 95 344 344 LEU LEU A . n A 1 96 THR 96 345 345 THR THR A . n B 2 1 MAA 1 1 1 MAA MAA B . n B 2 2 LYS 2 2 2 LYS LYS B . n B 2 3 PRO 3 3 3 PRO PRO B . n B 2 4 PHE 4 4 4 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 15P 1 1346 1346 15P 15P A . D 4 ZN 1 1347 1347 ZN ZN A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . E 5 HOH 48 2048 2048 HOH HOH A . E 5 HOH 49 2049 2049 HOH HOH A . E 5 HOH 50 2050 2050 HOH HOH A . E 5 HOH 51 2051 2051 HOH HOH A . E 5 HOH 52 2052 2052 HOH HOH A . E 5 HOH 53 2053 2053 HOH HOH A . E 5 HOH 54 2054 2054 HOH HOH A . E 5 HOH 55 2055 2055 HOH HOH A . E 5 HOH 56 2056 2056 HOH HOH A . E 5 HOH 57 2057 2057 HOH HOH A . E 5 HOH 58 2058 2058 HOH HOH A . F 5 HOH 1 2001 2001 HOH HOH B . F 5 HOH 2 2002 2002 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id MAA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id MAA _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ALA _pdbx_struct_mod_residue.details N-METHYL-L-ALANINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 690 ? 1 MORE -6 ? 1 'SSA (A^2)' 5800 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 51 ? A CYS 300 ? 1_555 ZN ? D ZN . ? A ZN 1347 ? 1_555 SG ? A CYS 78 ? A CYS 327 ? 1_555 113.1 ? 2 SG ? A CYS 51 ? A CYS 300 ? 1_555 ZN ? D ZN . ? A ZN 1347 ? 1_555 SG ? A CYS 54 ? A CYS 303 ? 1_555 110.9 ? 3 SG ? A CYS 78 ? A CYS 327 ? 1_555 ZN ? D ZN . ? A ZN 1347 ? 1_555 SG ? A CYS 54 ? A CYS 303 ? 1_555 108.1 ? 4 SG ? A CYS 51 ? A CYS 300 ? 1_555 ZN ? D ZN . ? A ZN 1347 ? 1_555 NE2 ? A HIS 71 ? A HIS 320 ? 1_555 104.5 ? 5 SG ? A CYS 78 ? A CYS 327 ? 1_555 ZN ? D ZN . ? A ZN 1347 ? 1_555 NE2 ? A HIS 71 ? A HIS 320 ? 1_555 107.2 ? 6 SG ? A CYS 54 ? A CYS 303 ? 1_555 ZN ? D ZN . ? A ZN 1347 ? 1_555 NE2 ? A HIS 71 ? A HIS 320 ? 1_555 113.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-02 2 'Structure model' 1 1 2016-12-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Non-polymer description' 3 2 'Structure model' Other 4 2 'Structure model' 'Source and taxonomy' 5 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 337 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2053 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 C3 A 15P 1346 ? ? 1_555 C3 A 15P 1346 ? ? 7_556 1.09 2 1 NZ B LYS 2 ? ? 1_555 C B PHE 4 ? ? 7_556 1.18 3 1 O A HOH 2021 ? ? 1_555 O A HOH 2032 ? ? 3_555 2.10 4 1 NZ B LYS 2 ? ? 1_555 O B PHE 4 ? ? 7_556 2.17 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 302 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -94.00 _pdbx_validate_torsion.psi -61.30 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2056 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.02 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 15P 1346 ? C4 ? C 15P 1 C4 2 1 N 1 A 15P 1346 ? O2 ? C 15P 1 O2 3 1 N 1 A 15P 1346 ? C5 ? C 15P 1 C5 4 1 N 1 A 15P 1346 ? C6 ? C 15P 1 C6 5 1 N 1 A 15P 1346 ? O3 ? C 15P 1 O3 6 1 N 1 A 15P 1346 ? C7 ? C 15P 1 C7 7 1 N 1 A 15P 1346 ? C8 ? C 15P 1 C8 8 1 N 1 A 15P 1346 ? O4 ? C 15P 1 O4 9 1 N 1 A 15P 1346 ? C9 ? C 15P 1 C9 10 1 N 1 A 15P 1346 ? C10 ? C 15P 1 C10 11 1 N 1 A 15P 1346 ? O5 ? C 15P 1 O5 12 1 N 1 A 15P 1346 ? C11 ? C 15P 1 C11 13 1 N 1 A 15P 1346 ? C12 ? C 15P 1 C12 14 1 N 1 A 15P 1346 ? O6 ? C 15P 1 O6 15 1 N 1 A 15P 1346 ? C13 ? C 15P 1 C13 16 1 N 1 A 15P 1346 ? C14 ? C 15P 1 C14 17 1 N 1 A 15P 1346 ? O7 ? C 15P 1 O7 18 1 N 1 A 15P 1346 ? C15 ? C 15P 1 C15 19 1 N 1 A 15P 1346 ? C16 ? C 15P 1 C16 20 1 N 1 A 15P 1346 ? O8 ? C 15P 1 O8 21 1 N 1 A 15P 1346 ? C17 ? C 15P 1 C17 22 1 N 1 A 15P 1346 ? C18 ? C 15P 1 C18 23 1 N 1 A 15P 1346 ? O9 ? C 15P 1 O9 24 1 N 1 A 15P 1346 ? C19 ? C 15P 1 C19 25 1 N 1 A 15P 1346 ? C20 ? C 15P 1 C20 26 1 N 1 A 15P 1346 ? O10 ? C 15P 1 O10 27 1 N 1 A 15P 1346 ? C21 ? C 15P 1 C21 28 1 N 1 A 15P 1346 ? C22 ? C 15P 1 C22 29 1 N 1 A 15P 1346 ? O11 ? C 15P 1 O11 30 1 N 1 A 15P 1346 ? C23 ? C 15P 1 C23 31 1 N 1 A 15P 1346 ? C24 ? C 15P 1 C24 32 1 N 1 A 15P 1346 ? O12 ? C 15P 1 O12 33 1 N 1 A 15P 1346 ? C25 ? C 15P 1 C25 34 1 N 1 A 15P 1346 ? C26 ? C 15P 1 C26 35 1 N 1 A 15P 1346 ? O13 ? C 15P 1 O13 36 1 N 1 A 15P 1346 ? C27 ? C 15P 1 C27 37 1 N 1 A 15P 1346 ? C28 ? C 15P 1 C28 38 1 N 1 A 15P 1346 ? O14 ? C 15P 1 O14 39 1 N 1 A 15P 1346 ? C29 ? C 15P 1 C29 40 1 N 1 A 15P 1346 ? C30 ? C 15P 1 C30 41 1 N 1 A 15P 1346 ? O15 ? C 15P 1 O15 42 1 N 1 A 15P 1346 ? C31 ? C 15P 1 C31 43 1 N 1 A 15P 1346 ? C32 ? C 15P 1 C32 44 1 N 1 A 15P 1346 ? O16 ? C 15P 1 O16 45 1 N 1 A 15P 1346 ? C33 ? C 15P 1 C33 46 1 N 1 A 15P 1346 ? C34 ? C 15P 1 C34 47 1 N 1 A 15P 1346 ? O17 ? C 15P 1 O17 48 1 N 1 A 15P 1346 ? C35 ? C 15P 1 C35 49 1 N 1 A 15P 1346 ? C36 ? C 15P 1 C36 50 1 N 1 A 15P 1346 ? O18 ? C 15P 1 O18 51 1 N 1 A 15P 1346 ? C37 ? C 15P 1 C37 52 1 N 1 A 15P 1346 ? C38 ? C 15P 1 C38 53 1 N 1 A 15P 1346 ? O19 ? C 15P 1 O19 54 1 N 1 A 15P 1346 ? C39 ? C 15P 1 C39 55 1 N 1 A 15P 1346 ? C40 ? C 15P 1 C40 56 1 N 1 A 15P 1346 ? O20 ? C 15P 1 O20 57 1 N 1 A 15P 1346 ? C41 ? C 15P 1 C41 58 1 N 1 A 15P 1346 ? C42 ? C 15P 1 C42 59 1 N 1 A 15P 1346 ? O21 ? C 15P 1 O21 60 1 N 1 A 15P 1346 ? C43 ? C 15P 1 C43 61 1 N 1 A 15P 1346 ? C44 ? C 15P 1 C44 62 1 N 1 A 15P 1346 ? O22 ? C 15P 1 O22 63 1 N 1 A 15P 1346 ? C45 ? C 15P 1 C45 64 1 N 1 A 15P 1346 ? C46 ? C 15P 1 C46 65 1 N 1 A 15P 1346 ? O23 ? C 15P 1 O23 66 1 N 1 A 15P 1346 ? C47 ? C 15P 1 C47 67 1 N 1 A 15P 1346 ? C48 ? C 15P 1 C48 68 1 N 1 A 15P 1346 ? O24 ? C 15P 1 O24 69 1 N 1 A 15P 1346 ? C49 ? C 15P 1 C49 70 1 N 1 A 15P 1346 ? C50 ? C 15P 1 C50 71 1 N 1 A 15P 1346 ? O25 ? C 15P 1 O25 72 1 N 1 A 15P 1346 ? C51 ? C 15P 1 C51 73 1 N 1 A 15P 1346 ? C52 ? C 15P 1 C52 74 1 N 1 A 15P 1346 ? O26 ? C 15P 1 O26 75 1 N 1 A 15P 1346 ? C53 ? C 15P 1 C53 76 1 N 1 A 15P 1346 ? C54 ? C 15P 1 C54 77 1 N 1 A 15P 1346 ? O27 ? C 15P 1 O27 78 1 N 1 A 15P 1346 ? C55 ? C 15P 1 C55 79 1 N 1 A 15P 1346 ? C56 ? C 15P 1 C56 80 1 N 1 A 15P 1346 ? O28 ? C 15P 1 O28 81 1 N 1 A 15P 1346 ? C57 ? C 15P 1 C57 82 1 N 1 A 15P 1346 ? C58 ? C 15P 1 C58 83 1 N 1 A 15P 1346 ? O29 ? C 15P 1 O29 84 1 N 1 A 15P 1346 ? C59 ? C 15P 1 C59 85 1 N 1 A 15P 1346 ? C60 ? C 15P 1 C60 86 1 N 1 A 15P 1346 ? O30 ? C 15P 1 O30 87 1 N 1 A 15P 1346 ? C61 ? C 15P 1 C61 88 1 N 1 A 15P 1346 ? C62 ? C 15P 1 C62 89 1 N 1 A 15P 1346 ? O31 ? C 15P 1 O31 90 1 N 1 A 15P 1346 ? C63 ? C 15P 1 C63 91 1 N 1 A 15P 1346 ? C64 ? C 15P 1 C64 92 1 N 1 A 15P 1346 ? O32 ? C 15P 1 O32 93 1 N 1 A 15P 1346 ? C65 ? C 15P 1 C65 94 1 N 1 A 15P 1346 ? C66 ? C 15P 1 C66 95 1 N 1 A 15P 1346 ? O33 ? C 15P 1 O33 96 1 N 1 A 15P 1346 ? C67 ? C 15P 1 C67 97 1 N 1 A 15P 1346 ? C68 ? C 15P 1 C68 98 1 N 1 A 15P 1346 ? O34 ? C 15P 1 O34 99 1 N 1 A 15P 1346 ? CM ? C 15P 1 CM # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'POLYETHYLENE GLYCOL (N=34)' 15P 4 'ZINC ION' ZN 5 water HOH #