HEADER TRANSFERASE 28-APR-08 2VSN TITLE STRUCTURE AND TOPOLOGICAL ARRANGEMENT OF AN O-GLCNAC TRANSFERASE TITLE 2 HOMOLOG: INSIGHT INTO MOLECULAR CONTROL OF INTRACELLULAR TITLE 3 GLYCOSYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: XCOGT; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 314565; SOURCE 4 STRAIN: 8004; SOURCE 5 ATCC: 33913; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS GLYCOSYL TRANSFERASE, N- ACETYLGLUCOSAMINE, TPR, OGT, GLCNAC, O- KEYWDS 2 GLYCOSYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MARTINEZ-FLEITES,M.S.MACAULEY,Y.HE,D.SHEN,D.VOCADLO,G.J.DAVIES REVDAT 4 08-MAY-24 2VSN 1 REMARK REVDAT 3 16-MAR-11 2VSN 1 VERSN REVDAT 2 24-FEB-09 2VSN 1 VERSN REVDAT 1 10-JUN-08 2VSN 0 JRNL AUTH C.MARTINEZ-FLEITES,M.S.MACAULEY,Y.HE,D.L.SHEN,D.J.VOCADLO, JRNL AUTH 2 G.J.DAVIES JRNL TITL STRUCTURE OF AN O-GLCNAC TRANSFERASE HOMOLOG PROVIDES JRNL TITL 2 INSIGHT INTO INTRACELLULAR GLYCOSYLATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 764 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18536723 JRNL DOI 10.1038/NSMB.1443 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3302450.030 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1818 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5741 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 296 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8113 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 1.13000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.50 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 26.49 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : UDP_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : UDP_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2VSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290036016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36765 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 75.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LI2SO4, 0.1M TRIS PH 8.5, 22.5% REMARK 280 PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.34550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.51800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.84600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.51800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.34550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.84600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 290 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 290 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 THR A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 LEU A 9 REMARK 465 ARG A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 ARG A 14 REMARK 465 HIS A 15 REMARK 465 ARG A 16 REMARK 465 PRO A 17 REMARK 465 GLN A 18 REMARK 465 ASP A 19 REMARK 465 PHE A 20 REMARK 465 VAL A 21 REMARK 465 MET A 36 REMARK 465 GLY A 37 REMARK 465 GLY A 49 REMARK 465 LEU A 50 REMARK 465 ALA A 51 REMARK 465 LEU A 52 REMARK 465 HIS A 53 REMARK 465 PRO A 54 REMARK 465 GLY A 55 REMARK 465 HIS A 56 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 GLN B 10 REMARK 465 LEU B 11 REMARK 465 ARG B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 VAL B 15 REMARK 465 ARG B 16 REMARK 465 HIS B 17 REMARK 465 ARG B 18 REMARK 465 PRO B 19 REMARK 465 GLN B 20 REMARK 465 ASP B 21 REMARK 465 PHE B 22 REMARK 465 MET B 35 REMARK 465 GLY B 36 REMARK 465 ASP B 37 REMARK 465 THR B 38 REMARK 465 THR B 39 REMARK 465 ALA B 53 REMARK 465 LEU B 53A REMARK 465 HIS B 53B REMARK 465 PRO B 54 REMARK 465 GLY B 55 REMARK 465 HIS B 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 297 O HOH A 2015 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 31 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 GLY A 295 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 LEU A 313 CB - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 ALA A 314 N - CA - CB ANGL. DEV. = 14.8 DEGREES REMARK 500 LEU B 313 CB - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 71 3.57 53.75 REMARK 500 ALA A 87 74.88 -166.44 REMARK 500 GLU A 89 49.76 -148.85 REMARK 500 ASP A 103 2.08 -67.62 REMARK 500 LEU A 121 65.15 -160.68 REMARK 500 VAL A 159 -167.85 -110.03 REMARK 500 ASP A 171 43.77 -84.70 REMARK 500 SER A 202 -3.39 70.97 REMARK 500 GLN A 235 59.47 -147.87 REMARK 500 SER A 261 -178.57 -178.03 REMARK 500 ALA A 314 -70.46 -139.86 REMARK 500 PHE A 383 30.85 -99.32 REMARK 500 ASP A 432 107.09 -57.04 REMARK 500 ALA A 433 -13.68 -47.03 REMARK 500 HIS A 466 -78.17 -113.87 REMARK 500 LEU A 501 53.79 -94.60 REMARK 500 ASP A 508 -179.80 -173.61 REMARK 500 GLN B 71 3.43 53.82 REMARK 500 ALA B 87 74.38 -166.20 REMARK 500 GLU B 89 49.81 -148.44 REMARK 500 ASP B 103 2.63 -66.64 REMARK 500 LEU B 121 64.78 -159.84 REMARK 500 VAL B 159 -167.39 -109.61 REMARK 500 ASP B 171 44.24 -85.82 REMARK 500 SER B 202 -3.69 72.49 REMARK 500 GLN B 235 59.92 -148.39 REMARK 500 SER B 261 -178.51 -178.12 REMARK 500 ARG B 297 71.48 62.63 REMARK 500 ASP B 406 -0.18 75.36 REMARK 500 ASP B 432 107.03 -56.75 REMARK 500 ALA B 433 -14.47 -47.13 REMARK 500 HIS B 466 -77.69 -113.27 REMARK 500 LEU B 501 54.44 -95.14 REMARK 500 VAL B 542 -36.62 -39.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B 900 DBREF 2VSN A -2 32 UNP Q4URB5 Q4URB5_XANC8 1 35 DBREF 2VSN A 36 568 UNP Q4URB5 Q4URB5_XANC8 36 568 DBREF 2VSN B 0 39 UNP Q4URB5 Q4URB5_XANC8 1 40 DBREF 2VSN B 43 52 UNP Q4URB5 Q4URB5_XANC8 41 50 DBREF 2VSN B 53 568 UNP Q4URB5 Q4URB5_XANC8 51 568 SEQADV 2VSN ALA A 290 UNP Q4URB5 ARG 290 ENGINEERED MUTATION SEQADV 2VSN ALA B 290 UNP Q4URB5 ARG 290 ENGINEERED MUTATION SEQRES 1 A 568 MET THR ALA ASP GLY PRO ARG GLU LEU LEU GLN LEU ARG SEQRES 2 A 568 ALA ALA VAL ARG HIS ARG PRO GLN ASP PHE VAL ALA TRP SEQRES 3 A 568 LEU MET LEU ALA ASP ALA GLU LEU GLY MET GLY ASP THR SEQRES 4 A 568 THR ALA GLY GLU MET ALA VAL GLN ARG GLY LEU ALA LEU SEQRES 5 A 568 HIS PRO GLY HIS PRO GLU ALA VAL ALA ARG LEU GLY ARG SEQRES 6 A 568 VAL ARG TRP THR GLN GLN ARG HIS ALA GLU ALA ALA VAL SEQRES 7 A 568 LEU LEU GLN GLN ALA SER ASP ALA ALA PRO GLU HIS PRO SEQRES 8 A 568 GLY ILE ALA LEU TRP LEU GLY HIS ALA LEU GLU ASP ALA SEQRES 9 A 568 GLY GLN ALA GLU ALA ALA ALA ALA ALA TYR THR ARG ALA SEQRES 10 A 568 HIS GLN LEU LEU PRO GLU GLU PRO TYR ILE THR ALA GLN SEQRES 11 A 568 LEU LEU ASN TRP ARG ARG ARG LEU CYS ASP TRP ARG ALA SEQRES 12 A 568 LEU ASP VAL LEU SER ALA GLN VAL ARG ALA ALA VAL ALA SEQRES 13 A 568 GLN GLY VAL GLY ALA VAL GLU PRO PHE ALA PHE LEU SER SEQRES 14 A 568 GLU ASP ALA SER ALA ALA GLU GLN LEU ALA CYS ALA ARG SEQRES 15 A 568 THR ARG ALA GLN ALA ILE ALA ALA SER VAL ARG PRO LEU SEQRES 16 A 568 ALA PRO THR ARG VAL ARG SER LYS GLY PRO LEU ARG VAL SEQRES 17 A 568 GLY PHE VAL SER ASN GLY PHE GLY ALA HIS PRO THR GLY SEQRES 18 A 568 LEU LEU THR VAL ALA LEU PHE GLU ALA LEU GLN ARG ARG SEQRES 19 A 568 GLN PRO ASP LEU GLN MET HIS LEU PHE ALA THR SER GLY SEQRES 20 A 568 ASP ASP GLY SER THR LEU ARG THR ARG LEU ALA GLN ALA SEQRES 21 A 568 SER THR LEU HIS ASP VAL THR ALA LEU GLY HIS LEU ALA SEQRES 22 A 568 THR ALA LYS HIS ILE ARG HIS HIS GLY ILE ASP LEU LEU SEQRES 23 A 568 PHE ASP LEU ALA GLY TRP GLY GLY GLY GLY ARG PRO GLU SEQRES 24 A 568 VAL PHE ALA LEU ARG PRO ALA PRO VAL GLN VAL ASN TRP SEQRES 25 A 568 LEU ALA TYR PRO GLY THR SER GLY ALA PRO TRP MET ASP SEQRES 26 A 568 TYR VAL LEU GLY ASP ALA PHE ALA LEU PRO PRO ALA LEU SEQRES 27 A 568 GLU PRO PHE TYR SER GLU HIS VAL LEU ARG LEU GLN GLY SEQRES 28 A 568 ALA PHE GLN PRO SER ASP THR SER ARG VAL VAL ALA GLU SEQRES 29 A 568 PRO PRO SER ARG THR GLN CYS GLY LEU PRO GLU GLN GLY SEQRES 30 A 568 VAL VAL LEU CYS CYS PHE ASN ASN SER TYR LYS LEU ASN SEQRES 31 A 568 PRO GLN SER MET ALA ARG MET LEU ALA VAL LEU ARG GLU SEQRES 32 A 568 VAL PRO ASP SER VAL LEU TRP LEU LEU SER GLY PRO GLY SEQRES 33 A 568 GLU ALA ASP ALA ARG LEU ARG ALA PHE ALA HIS ALA GLN SEQRES 34 A 568 GLY VAL ASP ALA GLN ARG LEU VAL PHE MET PRO LYS LEU SEQRES 35 A 568 PRO HIS PRO GLN TYR LEU ALA ARG TYR ARG HIS ALA ASP SEQRES 36 A 568 LEU PHE LEU ASP THR HIS PRO TYR ASN ALA HIS THR THR SEQRES 37 A 568 ALA SER ASP ALA LEU TRP THR GLY CYS PRO VAL LEU THR SEQRES 38 A 568 THR PRO GLY GLU THR PHE ALA ALA ARG VAL ALA GLY SER SEQRES 39 A 568 LEU ASN HIS HIS LEU GLY LEU ASP GLU MET ASN VAL ALA SEQRES 40 A 568 ASP ASP ALA ALA PHE VAL ALA LYS ALA VAL ALA LEU ALA SEQRES 41 A 568 SER ASP PRO ALA ALA LEU THR ALA LEU HIS ALA ARG VAL SEQRES 42 A 568 ASP VAL LEU ARG ARG ALA SER GLY VAL PHE HIS MET ASP SEQRES 43 A 568 GLY PHE ALA ASP ASP PHE GLY ALA LEU LEU GLN ALA LEU SEQRES 44 A 568 ALA ARG ARG HIS GLY TRP LEU GLY ILE SEQRES 1 B 568 MET THR ALA ASP GLY PRO ARG GLU LEU LEU GLN LEU ARG SEQRES 2 B 568 ALA ALA VAL ARG HIS ARG PRO GLN ASP PHE VAL ALA TRP SEQRES 3 B 568 LEU MET LEU ALA ASP ALA GLU LEU GLY MET GLY ASP THR SEQRES 4 B 568 THR ALA GLY GLU MET ALA VAL GLN ARG GLY LEU ALA LEU SEQRES 5 B 568 HIS PRO GLY HIS PRO GLU ALA VAL ALA ARG LEU GLY ARG SEQRES 6 B 568 VAL ARG TRP THR GLN GLN ARG HIS ALA GLU ALA ALA VAL SEQRES 7 B 568 LEU LEU GLN GLN ALA SER ASP ALA ALA PRO GLU HIS PRO SEQRES 8 B 568 GLY ILE ALA LEU TRP LEU GLY HIS ALA LEU GLU ASP ALA SEQRES 9 B 568 GLY GLN ALA GLU ALA ALA ALA ALA ALA TYR THR ARG ALA SEQRES 10 B 568 HIS GLN LEU LEU PRO GLU GLU PRO TYR ILE THR ALA GLN SEQRES 11 B 568 LEU LEU ASN TRP ARG ARG ARG LEU CYS ASP TRP ARG ALA SEQRES 12 B 568 LEU ASP VAL LEU SER ALA GLN VAL ARG ALA ALA VAL ALA SEQRES 13 B 568 GLN GLY VAL GLY ALA VAL GLU PRO PHE ALA PHE LEU SER SEQRES 14 B 568 GLU ASP ALA SER ALA ALA GLU GLN LEU ALA CYS ALA ARG SEQRES 15 B 568 THR ARG ALA GLN ALA ILE ALA ALA SER VAL ARG PRO LEU SEQRES 16 B 568 ALA PRO THR ARG VAL ARG SER LYS GLY PRO LEU ARG VAL SEQRES 17 B 568 GLY PHE VAL SER ASN GLY PHE GLY ALA HIS PRO THR GLY SEQRES 18 B 568 LEU LEU THR VAL ALA LEU PHE GLU ALA LEU GLN ARG ARG SEQRES 19 B 568 GLN PRO ASP LEU GLN MET HIS LEU PHE ALA THR SER GLY SEQRES 20 B 568 ASP ASP GLY SER THR LEU ARG THR ARG LEU ALA GLN ALA SEQRES 21 B 568 SER THR LEU HIS ASP VAL THR ALA LEU GLY HIS LEU ALA SEQRES 22 B 568 THR ALA LYS HIS ILE ARG HIS HIS GLY ILE ASP LEU LEU SEQRES 23 B 568 PHE ASP LEU ALA GLY TRP GLY GLY GLY GLY ARG PRO GLU SEQRES 24 B 568 VAL PHE ALA LEU ARG PRO ALA PRO VAL GLN VAL ASN TRP SEQRES 25 B 568 LEU ALA TYR PRO GLY THR SER GLY ALA PRO TRP MET ASP SEQRES 26 B 568 TYR VAL LEU GLY ASP ALA PHE ALA LEU PRO PRO ALA LEU SEQRES 27 B 568 GLU PRO PHE TYR SER GLU HIS VAL LEU ARG LEU GLN GLY SEQRES 28 B 568 ALA PHE GLN PRO SER ASP THR SER ARG VAL VAL ALA GLU SEQRES 29 B 568 PRO PRO SER ARG THR GLN CYS GLY LEU PRO GLU GLN GLY SEQRES 30 B 568 VAL VAL LEU CYS CYS PHE ASN ASN SER TYR LYS LEU ASN SEQRES 31 B 568 PRO GLN SER MET ALA ARG MET LEU ALA VAL LEU ARG GLU SEQRES 32 B 568 VAL PRO ASP SER VAL LEU TRP LEU LEU SER GLY PRO GLY SEQRES 33 B 568 GLU ALA ASP ALA ARG LEU ARG ALA PHE ALA HIS ALA GLN SEQRES 34 B 568 GLY VAL ASP ALA GLN ARG LEU VAL PHE MET PRO LYS LEU SEQRES 35 B 568 PRO HIS PRO GLN TYR LEU ALA ARG TYR ARG HIS ALA ASP SEQRES 36 B 568 LEU PHE LEU ASP THR HIS PRO TYR ASN ALA HIS THR THR SEQRES 37 B 568 ALA SER ASP ALA LEU TRP THR GLY CYS PRO VAL LEU THR SEQRES 38 B 568 THR PRO GLY GLU THR PHE ALA ALA ARG VAL ALA GLY SER SEQRES 39 B 568 LEU ASN HIS HIS LEU GLY LEU ASP GLU MET ASN VAL ALA SEQRES 40 B 568 ASP ASP ALA ALA PHE VAL ALA LYS ALA VAL ALA LEU ALA SEQRES 41 B 568 SER ASP PRO ALA ALA LEU THR ALA LEU HIS ALA ARG VAL SEQRES 42 B 568 ASP VAL LEU ARG ARG ALA SER GLY VAL PHE HIS MET ASP SEQRES 43 B 568 GLY PHE ALA ASP ASP PHE GLY ALA LEU LEU GLN ALA LEU SEQRES 44 B 568 ALA ARG ARG HIS GLY TRP LEU GLY ILE HET UDP A 900 25 HET UDP B 900 25 HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 5 HOH *71(H2 O) HELIX 1 1 TRP A 23 LEU A 31 1 9 HELIX 2 2 ASP A 38 GLN A 47 1 10 HELIX 3 3 ALA A 59 GLN A 70 1 12 HELIX 4 4 ARG A 72 ALA A 86 1 15 HELIX 5 5 HIS A 90 ASP A 103 1 14 HELIX 6 6 GLN A 106 LEU A 120 1 15 HELIX 7 7 GLU A 124 CYS A 139 1 16 HELIX 8 8 ALA A 143 GLY A 158 1 16 HELIX 9 9 GLU A 163 LEU A 168 1 6 HELIX 10 10 SER A 173 SER A 191 1 19 HELIX 11 11 HIS A 218 GLN A 235 1 18 HELIX 12 12 SER A 251 GLN A 259 1 9 HELIX 13 13 GLY A 270 HIS A 281 1 12 HELIX 14 14 ARG A 297 LEU A 303 1 7 HELIX 15 15 PRO A 335 TYR A 342 5 8 HELIX 16 16 ARG A 368 GLY A 372 5 5 HELIX 17 17 ASN A 385 LEU A 389 5 5 HELIX 18 18 ASN A 390 VAL A 404 1 15 HELIX 19 19 GLU A 417 GLN A 429 1 13 HELIX 20 20 ASP A 432 GLN A 434 5 3 HELIX 21 21 PRO A 443 TYR A 451 1 9 HELIX 22 22 ARG A 452 ALA A 454 5 3 HELIX 23 23 HIS A 466 GLY A 476 1 11 HELIX 24 24 THR A 486 ALA A 489 5 4 HELIX 25 25 ARG A 490 GLY A 500 1 11 HELIX 26 26 LEU A 501 MET A 504 5 4 HELIX 27 27 ASP A 508 ASP A 522 1 15 HELIX 28 28 ASP A 522 SER A 540 1 19 HELIX 29 29 GLY A 541 PHE A 543 5 3 HELIX 30 30 HIS A 544 ARG A 562 1 19 HELIX 31 31 ALA B 24 GLY B 34 1 11 HELIX 32 32 ALA B 43 GLY B 51 1 9 HELIX 33 33 GLU B 58 GLN B 70 1 13 HELIX 34 34 ARG B 72 ALA B 86 1 15 HELIX 35 35 HIS B 90 ASP B 103 1 14 HELIX 36 36 GLN B 106 LEU B 120 1 15 HELIX 37 37 GLU B 124 CYS B 139 1 16 HELIX 38 38 ALA B 143 GLY B 158 1 16 HELIX 39 39 GLU B 163 LEU B 168 1 6 HELIX 40 40 SER B 173 SER B 191 1 19 HELIX 41 41 HIS B 218 GLN B 235 1 18 HELIX 42 42 SER B 251 GLN B 259 1 9 HELIX 43 43 GLY B 270 HIS B 281 1 12 HELIX 44 44 ARG B 297 LEU B 303 1 7 HELIX 45 45 PRO B 335 TYR B 342 5 8 HELIX 46 46 ARG B 368 GLY B 372 5 5 HELIX 47 47 ASN B 385 LEU B 389 5 5 HELIX 48 48 ASN B 390 VAL B 404 1 15 HELIX 49 49 GLU B 417 GLN B 429 1 13 HELIX 50 50 ASP B 432 GLN B 434 5 3 HELIX 51 51 PRO B 443 TYR B 451 1 9 HELIX 52 52 ARG B 452 ALA B 454 5 3 HELIX 53 53 HIS B 466 GLY B 476 1 11 HELIX 54 54 THR B 486 ALA B 489 5 4 HELIX 55 55 ARG B 490 GLY B 500 1 11 HELIX 56 56 LEU B 501 MET B 504 5 4 HELIX 57 57 ASP B 508 ASP B 522 1 15 HELIX 58 58 ASP B 522 SER B 540 1 19 HELIX 59 59 GLY B 541 PHE B 543 5 3 HELIX 60 60 HIS B 544 ARG B 562 1 19 SHEET 1 AA 7 THR A 262 ASP A 265 0 SHEET 2 AA 7 LEU A 238 ALA A 244 1 O MET A 240 N THR A 262 SHEET 3 AA 7 LEU A 206 SER A 212 1 O LEU A 206 N GLN A 239 SHEET 4 AA 7 LEU A 285 ASP A 288 1 O LEU A 285 N GLY A 209 SHEET 5 AA 7 VAL A 308 TRP A 312 1 O VAL A 308 N LEU A 286 SHEET 6 AA 7 TYR A 326 ASP A 330 1 O TYR A 326 N ASN A 311 SHEET 7 AA 7 HIS A 345 LEU A 349 1 O HIS A 345 N VAL A 327 SHEET 1 AB 5 LEU A 436 MET A 439 0 SHEET 2 AB 5 VAL A 408 LEU A 412 1 O LEU A 409 N VAL A 437 SHEET 3 AB 5 VAL A 379 CYS A 382 1 O LEU A 380 N TRP A 410 SHEET 4 AB 5 LEU A 456 LEU A 458 1 O LEU A 456 N CYS A 381 SHEET 5 AB 5 VAL A 479 LEU A 480 1 N LEU A 480 O PHE A 457 SHEET 1 BA 7 THR B 262 ASP B 265 0 SHEET 2 BA 7 LEU B 238 ALA B 244 1 O MET B 240 N THR B 262 SHEET 3 BA 7 LEU B 206 SER B 212 1 O LEU B 206 N GLN B 239 SHEET 4 BA 7 LEU B 285 ASP B 288 1 O LEU B 285 N GLY B 209 SHEET 5 BA 7 VAL B 308 ASN B 311 1 O VAL B 308 N LEU B 286 SHEET 6 BA 7 TYR B 326 ASP B 330 1 O TYR B 326 N ASN B 311 SHEET 7 BA 7 HIS B 345 LEU B 349 1 O HIS B 345 N VAL B 327 SHEET 1 BB 5 LEU B 436 MET B 439 0 SHEET 2 BB 5 VAL B 408 LEU B 412 1 O LEU B 409 N VAL B 437 SHEET 3 BB 5 VAL B 379 CYS B 382 1 O LEU B 380 N TRP B 410 SHEET 4 BB 5 LEU B 456 LEU B 458 1 O LEU B 456 N CYS B 381 SHEET 5 BB 5 VAL B 479 LEU B 480 1 N LEU B 480 O PHE B 457 CISPEP 1 GLY A 204 PRO A 205 0 0.07 CISPEP 2 HIS A 461 PRO A 462 0 0.45 CISPEP 3 GLY B 204 PRO B 205 0 -0.05 CISPEP 4 HIS B 461 PRO B 462 0 0.53 SITE 1 AC1 12 PRO A 219 LEU A 222 ASN A 385 LYS A 388 SITE 2 AC1 12 LYS A 441 LEU A 442 HIS A 444 TYR A 447 SITE 3 AC1 12 HIS A 466 THR A 467 THR A 468 ASP A 471 SITE 1 AC2 12 PRO B 219 LEU B 222 ASN B 385 LYS B 388 SITE 2 AC2 12 LYS B 441 LEU B 442 HIS B 444 TYR B 447 SITE 3 AC2 12 HIS B 466 THR B 467 THR B 468 ASP B 471 CRYST1 86.691 105.692 151.036 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011535 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006621 0.00000