HEADER APOPTOSIS 01-MAY-08 2VSZ TITLE CRYSTAL STRUCTURE OF THE ELMO1 PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENGULFMENT AND CELL MOTILITY PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PLECKSTRIN HOMOLOGY DOMAIN, RESIDUES 532-675; COMPND 5 SYNONYM: CED-12 HOMOLOG, ELMO1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS APOPTOSIS, RAC SIGNALLING, SH3-BINDING, PHAGOCYTOSIS, ELMO, DOCK180, KEYWDS 2 PHOSPHOINOSITIDE BINDING, GUANINE NUCLEOTIDE EXCHANGE FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR D.KOMANDER,M.PATEL,D.BARFORD,J.-F.COTE REVDAT 4 13-JUL-11 2VSZ 1 VERSN REVDAT 3 21-APR-10 2VSZ 1 KEYWDS JRNL REMARK MASTER REVDAT 2 21-APR-09 2VSZ 1 ATOM REVDAT 1 10-MAR-09 2VSZ 0 JRNL AUTH D.KOMANDER,M.PATEL,M.LAURIN,N.FRADET,A.PELLETIER,D.BARFORD, JRNL AUTH 2 J.-F.COTE JRNL TITL AN ALPHA-HELICAL EXTENSION OF THE ELMO1 PLECKSTRIN HOMOLOGY JRNL TITL 2 DOMAIN MEDIATES DIRECT INTERACTION TO DOCK180 AND IS JRNL TITL 3 CRITICAL IN RAC SIGNALING. JRNL REF MOLECULAR BIOLOGY OF THE V. 19 4837 2008 JRNL REF 2 CELL JRNL REFN ISSN 1059-1524 JRNL PMID 18768751 JRNL DOI 10.1091/MBC.E08-04-0345 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 144.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1505 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2077 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.45000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.478 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2424 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3294 ; 1.944 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 6.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;33.379 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;18.304 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;25.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1839 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1488 ; 1.138 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2405 ; 2.069 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 936 ; 3.064 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 881 ; 4.876 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 527 A 673 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1640 72.8230 4.5390 REMARK 3 T TENSOR REMARK 3 T11: -0.1517 T22: -0.0283 REMARK 3 T33: 0.0020 T12: 0.1112 REMARK 3 T13: -0.0017 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.8873 L22: 1.1323 REMARK 3 L33: 0.7135 L12: -1.5509 REMARK 3 L13: -1.2475 L23: 0.4728 REMARK 3 S TENSOR REMARK 3 S11: -0.2359 S12: -0.1013 S13: -0.2194 REMARK 3 S21: 0.1558 S22: 0.1345 S23: 0.1343 REMARK 3 S31: 0.1922 S32: 0.0208 S33: 0.1014 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 529 B 675 REMARK 3 ORIGIN FOR THE GROUP (A): 57.6900 47.7570 -13.5810 REMARK 3 T TENSOR REMARK 3 T11: -0.0742 T22: -0.1073 REMARK 3 T33: 0.0804 T12: 0.0920 REMARK 3 T13: 0.0481 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 1.5901 L22: 2.5160 REMARK 3 L33: 1.0022 L12: -1.9315 REMARK 3 L13: -0.3577 L23: 0.0389 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: 0.1579 S13: -0.3489 REMARK 3 S21: 0.0443 S22: -0.1273 S23: 0.2924 REMARK 3 S31: 0.3262 S32: -0.1955 S33: 0.2198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. RESIDUES LACKING SIDE CHAIN DENSITY HAVE REMARK 3 BEEN REFINED AS ALA OR WITH OCCU 0.01 REMARK 4 REMARK 4 2VSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAY-08. REMARK 100 THE PDBE ID CODE IS EBI-36081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 40.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.3 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.5 REMARK 200 R MERGE FOR SHELL (I) : 0.23 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCDE, SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.8 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M SODIUM MALONATE [PH 6.75] REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.23467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.46933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.85200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.08667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.61733 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.23467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.46933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.08667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.85200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.61733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 83.00800 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 143.77407 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -13.61761 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 628 REMARK 465 GLY A 629 REMARK 465 ALA A 630 REMARK 465 LEU A 631 REMARK 465 LYS A 632 REMARK 465 GLN A 633 REMARK 465 LYS A 675 REMARK 465 GLY B 527 REMARK 465 PRO B 528 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 568 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 570 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 571 CG CD OE1 NE2 REMARK 470 GLN A 596 CG CD OE1 NE2 REMARK 470 GLU A 598 CG CD OE1 OE2 REMARK 470 GLU A 627 CG CD OE1 OE2 REMARK 470 ASN A 634 CG OD1 ND2 REMARK 470 LYS A 635 CG CD CE NZ REMARK 470 GLU A 636 CG CD OE1 OE2 REMARK 470 GLY A 674 CA C O REMARK 470 ASP B 602 CG OD1 OD2 REMARK 470 GLU B 636 CD OE1 OE2 REMARK 470 SER B 648 OG REMARK 470 ASN B 649 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2003 O HOH A 2003 10664 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 547 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 539 -55.47 -125.39 REMARK 500 ARG A 568 58.94 -150.34 REMARK 500 ASP A 647 -139.37 64.10 REMARK 500 SER A 648 -95.91 -56.48 REMARK 500 LYS B 539 -54.79 -124.11 REMARK 500 ARG B 570 -11.29 80.00 REMARK 500 SER B 648 10.64 49.24 REMARK 500 ASN B 649 -21.01 -145.48 REMARK 500 LEU B 673 -108.67 -113.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 2VSZ A 532 675 UNP Q92556 ELMO1_HUMAN 532 675 DBREF 2VSZ B 532 675 UNP Q92556 ELMO1_HUMAN 532 675 SEQADV 2VSZ GLY A 527 UNP Q92556 EXPRESSION TAG SEQADV 2VSZ PRO A 528 UNP Q92556 EXPRESSION TAG SEQADV 2VSZ LEU A 529 UNP Q92556 EXPRESSION TAG SEQADV 2VSZ GLY A 530 UNP Q92556 EXPRESSION TAG SEQADV 2VSZ SER A 531 UNP Q92556 EXPRESSION TAG SEQADV 2VSZ GLY B 527 UNP Q92556 EXPRESSION TAG SEQADV 2VSZ PRO B 528 UNP Q92556 EXPRESSION TAG SEQADV 2VSZ LEU B 529 UNP Q92556 EXPRESSION TAG SEQADV 2VSZ GLY B 530 UNP Q92556 EXPRESSION TAG SEQADV 2VSZ SER B 531 UNP Q92556 EXPRESSION TAG SEQRES 1 A 149 GLY PRO LEU GLY SER PRO ILE LEU GLU LEU LYS GLU LYS SEQRES 2 A 149 ILE GLN PRO GLU ILE LEU GLU LEU ILE LYS GLN GLN ARG SEQRES 3 A 149 LEU ASN ARG LEU VAL GLU GLY THR CYS PHE ARG LYS LEU SEQRES 4 A 149 ASN ALA ARG ARG ARG GLN ASP LYS PHE TRP TYR CYS ARG SEQRES 5 A 149 LEU SER PRO ASN HIS LYS VAL LEU HIS TYR GLY ASP LEU SEQRES 6 A 149 GLU GLU SER PRO GLN GLY GLU VAL PRO HIS ASP SER LEU SEQRES 7 A 149 GLN ASP LYS LEU PRO VAL ALA ASP ILE LYS ALA VAL VAL SEQRES 8 A 149 THR GLY LYS ASP CYS PRO HIS MET LYS GLU LYS GLY ALA SEQRES 9 A 149 LEU LYS GLN ASN LYS GLU VAL LEU GLU LEU ALA PHE SER SEQRES 10 A 149 ILE LEU TYR ASP SER ASN CYS GLN LEU ASN PHE ILE ALA SEQRES 11 A 149 PRO ASP LYS HIS GLU TYR CYS ILE TRP THR ASP GLY LEU SEQRES 12 A 149 ASN ALA LEU LEU GLY LYS SEQRES 1 B 149 GLY PRO LEU GLY SER PRO ILE LEU GLU LEU LYS GLU LYS SEQRES 2 B 149 ILE GLN PRO GLU ILE LEU GLU LEU ILE LYS GLN GLN ARG SEQRES 3 B 149 LEU ASN ARG LEU VAL GLU GLY THR CYS PHE ARG LYS LEU SEQRES 4 B 149 ASN ALA ARG ARG ARG GLN ASP LYS PHE TRP TYR CYS ARG SEQRES 5 B 149 LEU SER PRO ASN HIS LYS VAL LEU HIS TYR GLY ASP LEU SEQRES 6 B 149 GLU GLU SER PRO GLN GLY GLU VAL PRO HIS ASP SER LEU SEQRES 7 B 149 GLN ASP LYS LEU PRO VAL ALA ASP ILE LYS ALA VAL VAL SEQRES 8 B 149 THR GLY LYS ASP CYS PRO HIS MET LYS GLU LYS GLY ALA SEQRES 9 B 149 LEU LYS GLN ASN LYS GLU VAL LEU GLU LEU ALA PHE SER SEQRES 10 B 149 ILE LEU TYR ASP SER ASN CYS GLN LEU ASN PHE ILE ALA SEQRES 11 B 149 PRO ASP LYS HIS GLU TYR CYS ILE TRP THR ASP GLY LEU SEQRES 12 B 149 ASN ALA LEU LEU GLY LYS FORMUL 3 HOH *159(H2 O) HELIX 1 1 SER A 531 ILE A 533 5 3 HELIX 2 2 LEU A 534 LYS A 539 1 6 HELIX 3 3 LYS A 539 GLY A 559 1 21 HELIX 4 4 LYS A 620 LYS A 626 5 7 HELIX 5 5 ASN A 634 GLU A 639 1 6 HELIX 6 6 ASP A 658 LEU A 673 1 16 HELIX 7 7 SER B 531 ILE B 533 5 3 HELIX 8 8 LEU B 534 LYS B 539 1 6 HELIX 9 9 LYS B 539 GLY B 559 1 21 HELIX 10 10 PRO B 600 LEU B 604 5 5 HELIX 11 11 LYS B 620 LYS B 626 5 7 HELIX 12 12 ASN B 634 GLU B 639 5 6 HELIX 13 13 ASP B 658 LEU B 673 1 16 SHEET 1 AA 4 THR A 560 ARG A 563 0 SHEET 2 AA 4 PHE A 574 LEU A 579 -1 O TRP A 575 N PHE A 562 SHEET 3 AA 4 VAL A 585 LEU A 591 -1 O HIS A 587 N ARG A 578 SHEET 4 AA 4 ASP A 606 PRO A 609 -1 O ASP A 606 N TYR A 588 SHEET 1 AB 3 ILE A 613 THR A 618 0 SHEET 2 AB 3 ALA A 641 TYR A 646 -1 O SER A 643 N VAL A 617 SHEET 3 AB 3 CYS A 650 ILE A 655 -1 O CYS A 650 N TYR A 646 SHEET 1 BA 4 THR B 560 ARG B 563 0 SHEET 2 BA 4 PHE B 574 LEU B 579 -1 O TRP B 575 N PHE B 562 SHEET 3 BA 4 VAL B 585 LEU B 591 -1 O HIS B 587 N ARG B 578 SHEET 4 BA 4 ASP B 606 PRO B 609 -1 O ASP B 606 N TYR B 588 SHEET 1 BB 3 ILE B 613 THR B 618 0 SHEET 2 BB 3 ALA B 641 TYR B 646 -1 O SER B 643 N VAL B 617 SHEET 3 BB 3 CYS B 650 ILE B 655 -1 O CYS B 650 N TYR B 646 CISPEP 1 GLY A 527 PRO A 528 0 -23.30 CRYST1 166.016 166.016 81.704 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006024 0.003478 0.000000 0.00000 SCALE2 0.000000 0.006955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012239 0.00000