HEADER HYDROLASE 14-MAY-08 2VTC TITLE THE STRUCTURE OF A GLYCOSIDE HYDROLASE FAMILY 61 MEMBER, CEL61B FROM TITLE 2 THE HYPOCREA JECORINA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEL61B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELLULASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA; SOURCE 3 ORGANISM_TAXID: 51453; SOURCE 4 OTHER_DETAILS: SYNONYM TRICHODERMA REESEI KEYWDS HYDROLASE, GLYCOSIDE, CELLULASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KARKEHABADI,H.HANSSON,S.KIM,K.PIENS,C.MITCHINSON,M.SANDGREN REVDAT 5 06-NOV-24 2VTC 1 HETSYN REVDAT 4 29-JUL-20 2VTC 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 2VTC 1 VERSN REVDAT 2 30-SEP-08 2VTC 1 JRNL REVDAT 1 09-SEP-08 2VTC 0 JRNL AUTH S.KARKEHABADI,H.HANSSON,S.KIM,K.PIENS,C.MITCHINSON, JRNL AUTH 2 M.SANDGREN JRNL TITL THE FIRST STRUCTURE OF A GLYCOSIDE HYDROLASE FAMILY 61 JRNL TITL 2 MEMBER, CEL61B FROM THE HYPOCREA JECORINA, AT 1.6 A JRNL TITL 3 RESOLUTION. JRNL REF J.MOL.BIOL. V. 383 144 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18723026 JRNL DOI 10.1016/J.JMB.2008.08.016 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 74912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3962 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 292 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3524 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 605 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3704 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5096 ; 1.351 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ;10.799 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;38.698 ;25.181 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;10.320 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 7.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 552 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2908 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1637 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2499 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 359 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.151 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2332 ; 0.751 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3676 ; 1.209 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1630 ; 1.918 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1420 ; 2.660 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1290036204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 67.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20 % PEG 2000, 0.1 M TRIS PH 8.4 REMARK 280 AND 10MM NICKEL CHLORIDE., PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.46467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.23233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.34850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.11617 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.58083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 LYS A -17 REMARK 465 SER A -16 REMARK 465 CYS A -15 REMARK 465 ALA A -14 REMARK 465 ILE A -13 REMARK 465 LEU A -12 REMARK 465 ALA A -11 REMARK 465 ALA A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 CYS A -7 REMARK 465 LEU A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 VAL A -2 REMARK 465 LEU A -1 REMARK 465 GLY A 0 REMARK 465 GLN A 229 REMARK 465 GLY A 230 REMARK 465 MET B -18 REMARK 465 LYS B -17 REMARK 465 SER B -16 REMARK 465 CYS B -15 REMARK 465 ALA B -14 REMARK 465 ILE B -13 REMARK 465 LEU B -12 REMARK 465 ALA B -11 REMARK 465 ALA B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 CYS B -7 REMARK 465 LEU B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 VAL B -2 REMARK 465 LEU B -1 REMARK 465 GLY B 0 REMARK 465 GLN B 229 REMARK 465 GLY B 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NI NI A 1231 O HOH A 2230 1.21 REMARK 500 OD1 ASP B 20 O HOH B 2046 2.07 REMARK 500 OH TYR A 176 O HOH A 2230 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 60 -175.34 85.95 REMARK 500 HIS B 60 -179.53 87.78 REMARK 500 TYR B 214 47.22 -103.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 88 HIS A 89 -129.86 REMARK 500 PRO B 88 HIS B 89 -141.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2018 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A2080 DISTANCE = 6.53 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 NICKEL (NI): NICKEL WAS ADDED DURING THE CRYSTALLIZATION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1231 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 N REMARK 620 2 HIS A 1 ND1 95.1 REMARK 620 3 HIS A 89 NE2 103.3 161.6 REMARK 620 4 TYR A 176 OH 100.1 87.8 88.7 REMARK 620 5 HOH A2002 O 99.0 84.1 93.2 159.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1232 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 30 NE2 REMARK 620 2 HOH B2066 O 92.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1231 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 1 ND1 REMARK 620 2 HIS B 1 N 92.6 REMARK 620 3 HIS B 89 NE2 172.6 93.5 REMARK 620 4 TYR B 176 OH 94.0 94.5 89.5 REMARK 620 5 HOH B2002 O 86.3 91.3 89.5 174.2 REMARK 620 6 HOH B2251 O 88.6 177.2 85.4 82.9 91.3 REMARK 620 N 1 2 3 4 5 DBREF 2VTC A -18 230 UNP Q7Z9M7 Q7Z9M7_TRIRE 1 249 DBREF 2VTC B -18 230 UNP Q7Z9M7 Q7Z9M7_TRIRE 1 249 SEQRES 1 A 249 MET LYS SER CYS ALA ILE LEU ALA ALA LEU GLY CYS LEU SEQRES 2 A 249 ALA GLY SER VAL LEU GLY HIS GLY GLN VAL GLN ASN PHE SEQRES 3 A 249 THR ILE ASN GLY GLN TYR ASN GLN GLY PHE ILE LEU ASP SEQRES 4 A 249 TYR TYR TYR GLN LYS GLN ASN THR GLY HIS PHE PRO ASN SEQRES 5 A 249 VAL ALA GLY TRP TYR ALA GLU ASP LEU ASP LEU GLY PHE SEQRES 6 A 249 ILE SER PRO ASP GLN TYR THR THR PRO ASP ILE VAL CYS SEQRES 7 A 249 HIS LYS ASN ALA ALA PRO GLY ALA ILE SER ALA THR ALA SEQRES 8 A 249 ALA ALA GLY SER ASN ILE VAL PHE GLN TRP GLY PRO GLY SEQRES 9 A 249 VAL TRP PRO HIS PRO TYR GLY PRO ILE VAL THR TYR VAL SEQRES 10 A 249 VAL GLU CYS SER GLY SER CYS THR THR VAL ASN LYS ASN SEQRES 11 A 249 ASN LEU ARG TRP VAL LYS ILE GLN GLU ALA GLY ILE ASN SEQRES 12 A 249 TYR ASN THR GLN VAL TRP ALA GLN GLN ASP LEU ILE ASN SEQRES 13 A 249 GLN GLY ASN LYS TRP THR VAL LYS ILE PRO SER SER LEU SEQRES 14 A 249 ARG PRO GLY ASN TYR VAL PHE ARG HIS GLU LEU LEU ALA SEQRES 15 A 249 ALA HIS GLY ALA SER SER ALA ASN GLY MET GLN ASN TYR SEQRES 16 A 249 PRO GLN CYS VAL ASN ILE ALA VAL THR GLY SER GLY THR SEQRES 17 A 249 LYS ALA LEU PRO ALA GLY THR PRO ALA THR GLN LEU TYR SEQRES 18 A 249 LYS PRO THR ASP PRO GLY ILE LEU PHE ASN PRO TYR THR SEQRES 19 A 249 THR ILE THR SER TYR THR ILE PRO GLY PRO ALA LEU TRP SEQRES 20 A 249 GLN GLY SEQRES 1 B 249 MET LYS SER CYS ALA ILE LEU ALA ALA LEU GLY CYS LEU SEQRES 2 B 249 ALA GLY SER VAL LEU GLY HIS GLY GLN VAL GLN ASN PHE SEQRES 3 B 249 THR ILE ASN GLY GLN TYR ASN GLN GLY PHE ILE LEU ASP SEQRES 4 B 249 TYR TYR TYR GLN LYS GLN ASN THR GLY HIS PHE PRO ASN SEQRES 5 B 249 VAL ALA GLY TRP TYR ALA GLU ASP LEU ASP LEU GLY PHE SEQRES 6 B 249 ILE SER PRO ASP GLN TYR THR THR PRO ASP ILE VAL CYS SEQRES 7 B 249 HIS LYS ASN ALA ALA PRO GLY ALA ILE SER ALA THR ALA SEQRES 8 B 249 ALA ALA GLY SER ASN ILE VAL PHE GLN TRP GLY PRO GLY SEQRES 9 B 249 VAL TRP PRO HIS PRO TYR GLY PRO ILE VAL THR TYR VAL SEQRES 10 B 249 VAL GLU CYS SER GLY SER CYS THR THR VAL ASN LYS ASN SEQRES 11 B 249 ASN LEU ARG TRP VAL LYS ILE GLN GLU ALA GLY ILE ASN SEQRES 12 B 249 TYR ASN THR GLN VAL TRP ALA GLN GLN ASP LEU ILE ASN SEQRES 13 B 249 GLN GLY ASN LYS TRP THR VAL LYS ILE PRO SER SER LEU SEQRES 14 B 249 ARG PRO GLY ASN TYR VAL PHE ARG HIS GLU LEU LEU ALA SEQRES 15 B 249 ALA HIS GLY ALA SER SER ALA ASN GLY MET GLN ASN TYR SEQRES 16 B 249 PRO GLN CYS VAL ASN ILE ALA VAL THR GLY SER GLY THR SEQRES 17 B 249 LYS ALA LEU PRO ALA GLY THR PRO ALA THR GLN LEU TYR SEQRES 18 B 249 LYS PRO THR ASP PRO GLY ILE LEU PHE ASN PRO TYR THR SEQRES 19 B 249 THR ILE THR SER TYR THR ILE PRO GLY PRO ALA LEU TRP SEQRES 20 B 249 GLN GLY MODRES 2VTC ASN A 6 ASN GLYCOSYLATION SITE MODRES 2VTC ASN B 6 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NI A1231 1 HET NI B1231 1 HET NI B1232 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NI NICKEL (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 NI 3(NI 2+) FORMUL 8 HOH *605(H2 O) HELIX 1 1 ILE A 18 GLY A 29 1 12 HELIX 2 2 SER A 48 TYR A 52 5 5 HELIX 3 3 PRO A 55 HIS A 60 1 6 HELIX 4 4 SER A 104 VAL A 108 5 5 HELIX 5 5 ASN A 109 ASN A 112 5 4 HELIX 6 6 ALA A 131 GLN A 138 1 8 HELIX 7 7 THR A 199 LEU A 201 5 3 HELIX 8 8 ILE B 18 GLY B 29 1 12 HELIX 9 9 SER B 48 TYR B 52 5 5 HELIX 10 10 PRO B 55 HIS B 60 1 6 HELIX 11 11 SER B 104 VAL B 108 5 5 HELIX 12 12 ASN B 109 ASN B 112 5 4 HELIX 13 13 TRP B 130 GLN B 138 1 9 HELIX 14 14 THR B 199 LEU B 201 5 3 SHEET 1 AA 4 GLN A 12 GLN A 15 0 SHEET 2 AA 4 GLN A 3 ILE A 9 -1 O PHE A 7 N ASN A 14 SHEET 3 AA 4 ASN A 77 GLY A 83 -1 O VAL A 79 N THR A 8 SHEET 4 AA 4 LYS A 141 LYS A 145 -1 O TRP A 142 N PHE A 80 SHEET 1 AB 6 ALA A 70 ALA A 73 0 SHEET 2 AB 6 GLN A 174 THR A 185 1 O ASN A 181 N ALA A 70 SHEET 3 AB 6 GLY A 153 ALA A 163 -1 O GLY A 153 N VAL A 184 SHEET 4 AB 6 ILE A 94 GLU A 100 -1 O VAL A 95 N GLU A 160 SHEET 5 AB 6 ARG A 114 ALA A 121 -1 O VAL A 116 N VAL A 98 SHEET 6 AB 6 THR A 196 PRO A 197 -1 O THR A 196 N TRP A 115 SHEET 1 AC 2 ILE A 123 ASN A 124 0 SHEET 2 AC 2 VAL A 129 TRP A 130 -1 O VAL A 129 N ASN A 124 SHEET 1 BA 4 GLN B 12 GLN B 15 0 SHEET 2 BA 4 GLN B 3 ILE B 9 -1 O PHE B 7 N ASN B 14 SHEET 3 BA 4 ASN B 77 GLY B 83 -1 O VAL B 79 N THR B 8 SHEET 4 BA 4 LYS B 141 LYS B 145 -1 O TRP B 142 N PHE B 80 SHEET 1 BB 6 ALA B 70 ALA B 73 0 SHEET 2 BB 6 GLN B 174 THR B 185 1 O ASN B 181 N ALA B 70 SHEET 3 BB 6 GLY B 153 ALA B 163 -1 O GLY B 153 N VAL B 184 SHEET 4 BB 6 ILE B 94 GLU B 100 -1 O VAL B 95 N GLU B 160 SHEET 5 BB 6 ARG B 114 ALA B 121 -1 O VAL B 116 N VAL B 98 SHEET 6 BB 6 THR B 196 PRO B 197 -1 O THR B 196 N TRP B 115 SSBOND 1 CYS A 59 CYS A 179 1555 1555 2.06 SSBOND 2 CYS A 101 CYS A 105 1555 1555 2.03 SSBOND 3 CYS B 59 CYS B 179 1555 1555 2.06 SSBOND 4 CYS B 101 CYS B 105 1555 1555 2.03 LINK ND2 ASN A 6 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 6 C1 NAG D 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK N HIS A 1 NI NI A1231 1555 1555 1.92 LINK ND1 HIS A 1 NI NI A1231 1555 1555 2.21 LINK NE2 HIS A 30 NI NI B1232 6654 1555 2.06 LINK NE2 HIS A 89 NI NI A1231 1555 1555 2.06 LINK OH TYR A 176 NI NI A1231 1555 1555 2.51 LINK NI NI A1231 O HOH A2002 1555 1555 2.15 LINK ND1 HIS B 1 NI NI B1231 1555 1555 2.10 LINK N HIS B 1 NI NI B1231 1555 1555 2.13 LINK NE2 HIS B 89 NI NI B1231 1555 1555 2.11 LINK OH TYR B 176 NI NI B1231 1555 1555 2.37 LINK NI NI B1231 O HOH B2002 1555 1555 2.20 LINK NI NI B1231 O HOH B2251 1555 1555 2.30 LINK NI NI B1232 O HOH B2066 1555 1555 2.24 CISPEP 1 GLY A 83 PRO A 84 0 3.96 CISPEP 2 GLY B 83 PRO B 84 0 3.76 CRYST1 101.445 101.445 102.697 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009858 0.005691 0.000000 0.00000 SCALE2 0.000000 0.011383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009737 0.00000 MTRIX1 1 -0.697100 0.716100 0.035440 22.00000 1 MTRIX2 1 0.716800 0.697200 0.012180 -10.55000 1 MTRIX3 1 -0.015990 0.033890 -0.999300 39.17000 1