HEADER HYDROLASE 22-MAY-08 2VU9 TITLE CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN SEROTYPE A BINDING DOMAIN IN TITLE 2 COMPLEX WITH GT1B COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN A HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BINDING DOMAIN, RESIDUES 876-1296; COMPND 5 SYNONYM: BOTULINUM NEUROTOXIN SEROTYPE A BINDING DOMAIN, BONT/A, COMPND 6 BONTOXILYSIN-A, BOTOX; COMPND 7 EC: 3.4.24.69; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 36826; SOURCE 4 STRAIN: A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, METALLOPROTEASE, NEUROTOXIN, GANGLIOSIDE, METAL-BINDING, KEYWDS 2 TOXIN, PROTEASE, MEMBRANE, RECEPTOR, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR P.STENMARK,J.DUPUY,R.C.STEVENS REVDAT 5 13-DEC-23 2VU9 1 HETSYN REVDAT 4 29-JUL-20 2VU9 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 2VU9 1 VERSN REVDAT 2 24-FEB-09 2VU9 1 VERSN REVDAT 1 26-AUG-08 2VU9 0 JRNL AUTH P.STENMARK,J.DUPUY,A.IMAMURA,M.KISO,R.C.STEVENS JRNL TITL CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE A IN COMPLEX JRNL TITL 2 WITH THE CELL SURFACE CO-RECEPTOR GT1B- INSIGHT INTO THE JRNL TITL 3 TOXIN-NEURON INTERACTION. JRNL REF PLOS PATHOG. V. 4 E129 2008 JRNL REFN ISSN 1553-7366 JRNL PMID 18704164 JRNL DOI 10.1371/JOURNAL.PPAT.1000129 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 55875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2968 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4049 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 397 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3693 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2489 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5013 ; 1.455 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5997 ; 0.852 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 7.301 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;36.519 ;25.026 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;12.869 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.003 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4042 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 742 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 601 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2657 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1793 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2069 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 297 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2775 ; 1.080 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3459 ; 1.298 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1875 ; 2.303 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1551 ; 3.210 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 873 A 910 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6320 32.1480 -8.7170 REMARK 3 T TENSOR REMARK 3 T11: -0.0844 T22: 0.1026 REMARK 3 T33: 0.1308 T12: -0.0140 REMARK 3 T13: 0.0347 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.1940 L22: 1.7357 REMARK 3 L33: 1.8361 L12: -0.6912 REMARK 3 L13: 0.7539 L23: 0.0518 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: 0.2499 S13: -0.2613 REMARK 3 S21: -0.2343 S22: -0.0395 S23: -0.2903 REMARK 3 S31: 0.0421 S32: 0.2934 S33: -0.0595 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 911 A 966 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3350 40.3340 -0.5250 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0352 REMARK 3 T33: 0.0507 T12: -0.0436 REMARK 3 T13: -0.0248 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.6958 L22: 1.5144 REMARK 3 L33: 2.3553 L12: 0.1192 REMARK 3 L13: 0.1860 L23: -1.1708 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0933 S13: 0.0600 REMARK 3 S21: 0.2219 S22: -0.1636 S23: -0.2502 REMARK 3 S31: -0.3655 S32: 0.2555 S33: 0.1655 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 967 A 1033 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2080 40.4880 -0.4680 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.0462 REMARK 3 T33: 0.0384 T12: 0.0320 REMARK 3 T13: 0.0032 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.2768 L22: 1.3124 REMARK 3 L33: 3.5281 L12: 0.0419 REMARK 3 L13: 0.0139 L23: -1.4842 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.0664 S13: 0.0693 REMARK 3 S21: 0.2584 S22: 0.0846 S23: 0.0208 REMARK 3 S31: -0.5297 S32: -0.2300 S33: -0.0666 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1034 A 1085 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0210 39.2320 -4.0520 REMARK 3 T TENSOR REMARK 3 T11: -0.0026 T22: 0.0107 REMARK 3 T33: 0.0240 T12: -0.0131 REMARK 3 T13: 0.0030 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.9917 L22: 1.7235 REMARK 3 L33: 3.2292 L12: -0.1242 REMARK 3 L13: 0.3456 L23: -1.4099 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: 0.1421 S13: 0.0399 REMARK 3 S21: 0.1233 S22: -0.0166 S23: -0.0886 REMARK 3 S31: -0.2555 S32: 0.0310 S33: 0.0206 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1086 A 1131 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5000 14.5250 11.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.0550 T22: 0.0463 REMARK 3 T33: 0.0729 T12: -0.0087 REMARK 3 T13: -0.0299 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2226 L22: 0.9270 REMARK 3 L33: 1.1047 L12: -0.2697 REMARK 3 L13: -0.0840 L23: -0.1289 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.0139 S13: -0.0237 REMARK 3 S21: -0.0630 S22: 0.0257 S23: 0.0736 REMARK 3 S31: 0.0094 S32: 0.0012 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1132 A 1171 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6840 16.8730 19.2350 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0716 REMARK 3 T33: 0.0573 T12: -0.0139 REMARK 3 T13: -0.0205 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.1979 L22: 1.1047 REMARK 3 L33: 1.4854 L12: 0.4366 REMARK 3 L13: 0.0098 L23: -0.4361 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: -0.0084 S13: -0.0857 REMARK 3 S21: 0.1197 S22: 0.0021 S23: 0.0979 REMARK 3 S31: -0.1103 S32: 0.0806 S33: 0.0396 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1172 A 1223 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2400 0.3640 16.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.0642 T22: 0.0184 REMARK 3 T33: 0.0339 T12: 0.0303 REMARK 3 T13: 0.0030 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.5958 L22: 1.0482 REMARK 3 L33: 1.6901 L12: 0.3250 REMARK 3 L13: -0.0488 L23: 0.2670 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: -0.0731 S13: -0.1173 REMARK 3 S21: 0.0575 S22: 0.0380 S23: -0.0092 REMARK 3 S31: 0.2385 S32: 0.1183 S33: 0.0221 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1224 A 1246 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1290 5.7450 4.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.0269 T22: 0.0608 REMARK 3 T33: 0.0215 T12: 0.0078 REMARK 3 T13: -0.0157 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.3203 L22: 3.8087 REMARK 3 L33: 1.5592 L12: 0.1516 REMARK 3 L13: 0.1407 L23: -0.6479 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.1029 S13: 0.0768 REMARK 3 S21: -0.1956 S22: -0.0545 S23: 0.1948 REMARK 3 S31: 0.0048 S32: -0.0445 S33: 0.0664 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1247 A 1287 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3730 5.8990 12.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.0183 T22: 0.0473 REMARK 3 T33: 0.0878 T12: 0.0055 REMARK 3 T13: -0.0257 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.3257 L22: 2.5835 REMARK 3 L33: 1.1755 L12: 0.7497 REMARK 3 L13: 0.4899 L23: 0.3408 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: 0.0942 S13: 0.0540 REMARK 3 S21: -0.1703 S22: -0.0105 S23: 0.4443 REMARK 3 S31: 0.0321 S32: -0.1583 S33: 0.0986 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1288 A 1297 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5970 25.8160 22.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.0796 T22: 0.0710 REMARK 3 T33: 0.0124 T12: -0.0453 REMARK 3 T13: -0.0687 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.4931 L22: 3.9234 REMARK 3 L33: 8.0576 L12: -0.2783 REMARK 3 L13: -1.0355 L23: -4.1229 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.2658 S13: 0.0640 REMARK 3 S21: 0.4752 S22: -0.1971 S23: -0.2582 REMARK 3 S31: -0.5272 S32: 0.6025 S33: 0.2005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1290036344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58845 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2NYY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG3350, 0.2 M MGCL2, 0.1 M REMARK 280 BISTRIS PH5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.05500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.05500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.76000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.35000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.05500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.76000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.35000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.05500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 854 REMARK 465 GLY A 855 REMARK 465 SER A 856 REMARK 465 SER A 857 REMARK 465 HIS A 858 REMARK 465 HIS A 859 REMARK 465 HIS A 860 REMARK 465 HIS A 861 REMARK 465 HIS A 862 REMARK 465 HIS A 863 REMARK 465 SER A 864 REMARK 465 SER A 865 REMARK 465 GLY A 866 REMARK 465 LEU A 867 REMARK 465 VAL A 868 REMARK 465 PRO A 869 REMARK 465 ARG A 870 REMARK 465 GLY A 871 REMARK 465 SER A 872 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 3258 O HOH A 3258 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 935 88.42 -152.61 REMARK 500 ASN A1025 -92.86 -143.09 REMARK 500 LYS A1056 141.28 -174.16 REMARK 500 ASP A1076 36.65 -92.58 REMARK 500 ASN A1127 142.87 71.54 REMARK 500 TYR A1165 -74.05 -127.73 REMARK 500 GLN A1219 -13.33 -147.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 1255 ASN A 1256 -51.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GT1B (COMPOSED OF BGC, GAL, SIA, NGA): SIX OUT OF THE SEVEN REMARK 600 MONOSACCARIDES IN THE GANGLIOSIDE GT1B. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2298 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1089 OD1 REMARK 620 2 ASN A1093 OD1 93.5 REMARK 620 3 HOH A3177 O 88.0 87.5 REMARK 620 4 HOH A3318 O 173.8 91.5 88.4 REMARK 620 5 HOH A3319 O 101.0 90.9 171.0 82.8 REMARK 620 6 HOH A3321 O 85.3 178.2 93.7 89.9 88.0 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BTA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN SEROTYPE A REMARK 900 RELATED ID: 2VUA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TOXIN REMARK 900 RELATED ID: 1UEE RELATED DB: PDB REMARK 900 THE STRUCTURE OF SUBSTRATE-BOUND BOTOX LIGHT CHAIN DBREF 2VU9 A 854 875 PDB 2VU9 2VU9 854 875 DBREF 2VU9 A 876 1296 UNP P10845 BXA1_CLOBO 876 1296 DBREF 2VU9 A 1297 1297 PDB 2VU9 2VU9 1297 1297 SEQRES 1 A 444 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 444 LEU VAL PRO ARG GLY SER HIS MET ASP THR SER ILE LEU SEQRES 3 A 444 ASN LEU ARG TYR GLU SER ASN HIS LEU ILE ASP LEU SER SEQRES 4 A 444 ARG TYR ALA SER LYS ILE ASN ILE GLY SER LYS VAL ASN SEQRES 5 A 444 PHE ASP PRO ILE ASP LYS ASN GLN ILE GLN LEU PHE ASN SEQRES 6 A 444 LEU GLU SER SER LYS ILE GLU VAL ILE LEU LYS ASN ALA SEQRES 7 A 444 ILE VAL TYR ASN SER MET TYR GLU ASN PHE SER THR SER SEQRES 8 A 444 PHE TRP ILE ARG ILE PRO LYS TYR PHE ASN SER ILE SER SEQRES 9 A 444 LEU ASN ASN GLU TYR THR ILE ILE ASN CYS MET GLU ASN SEQRES 10 A 444 ASN SER GLY TRP LYS VAL SER LEU ASN TYR GLY GLU ILE SEQRES 11 A 444 ILE TRP THR LEU GLN ASP THR GLN GLU ILE LYS GLN ARG SEQRES 12 A 444 VAL VAL PHE LYS TYR SER GLN MET ILE ASN ILE SER ASP SEQRES 13 A 444 TYR ILE ASN ARG TRP ILE PHE VAL THR ILE THR ASN ASN SEQRES 14 A 444 ARG LEU ASN ASN SER LYS ILE TYR ILE ASN GLY ARG LEU SEQRES 15 A 444 ILE ASP GLN LYS PRO ILE SER ASN LEU GLY ASN ILE HIS SEQRES 16 A 444 ALA SER ASN ASN ILE MET PHE LYS LEU ASP GLY CYS ARG SEQRES 17 A 444 ASP THR HIS ARG TYR ILE TRP ILE LYS TYR PHE ASN LEU SEQRES 18 A 444 PHE ASP LYS GLU LEU ASN GLU LYS GLU ILE LYS ASP LEU SEQRES 19 A 444 TYR ASP ASN GLN SER ASN SER GLY ILE LEU LYS ASP PHE SEQRES 20 A 444 TRP GLY ASP TYR LEU GLN TYR ASP LYS PRO TYR TYR MET SEQRES 21 A 444 LEU ASN LEU TYR ASP PRO ASN LYS TYR VAL ASP VAL ASN SEQRES 22 A 444 ASN VAL GLY ILE ARG GLY TYR MET TYR LEU LYS GLY PRO SEQRES 23 A 444 ARG GLY SER VAL MET THR THR ASN ILE TYR LEU ASN SER SEQRES 24 A 444 SER LEU TYR ARG GLY THR LYS PHE ILE ILE LYS LYS TYR SEQRES 25 A 444 ALA SER GLY ASN LYS ASP ASN ILE VAL ARG ASN ASN ASP SEQRES 26 A 444 ARG VAL TYR ILE ASN VAL VAL VAL LYS ASN LYS GLU TYR SEQRES 27 A 444 ARG LEU ALA THR ASN ALA SER GLN ALA GLY VAL GLU LYS SEQRES 28 A 444 ILE LEU SER ALA LEU GLU ILE PRO ASP VAL GLY ASN LEU SEQRES 29 A 444 SER GLN VAL VAL VAL MET LYS SER LYS ASN ASP GLN GLY SEQRES 30 A 444 ILE THR ASN LYS CYS LYS MET ASN LEU GLN ASP ASN ASN SEQRES 31 A 444 GLY ASN ASP ILE GLY PHE ILE GLY PHE HIS GLN PHE ASN SEQRES 32 A 444 ASN ILE ALA LYS LEU VAL ALA SER ASN TRP TYR ASN ARG SEQRES 33 A 444 GLN ILE GLU ARG SER SER ARG THR LEU GLY CYS SER TRP SEQRES 34 A 444 GLU PHE ILE PRO VAL ASP ASP GLY TRP GLY GLU ARG PRO SEQRES 35 A 444 LEU GLN HET BGC B 1 12 HET GAL B 2 11 HET NGA B 3 14 HET GAL B 4 11 HET SIA B 5 20 HET SIA B 6 20 HET MG A2298 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM MG MAGNESIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 2 BGC C6 H12 O6 FORMUL 2 GAL 2(C6 H12 O6) FORMUL 2 NGA C8 H15 N O6 FORMUL 2 SIA 2(C11 H19 N O9) FORMUL 3 MG MG 2+ FORMUL 4 HOH *397(H2 O) HELIX 1 1 LYS A 929 VAL A 933 5 5 HELIX 2 2 ASN A 954 LEU A 958 5 5 HELIX 3 3 ASN A 1080 ASN A 1093 1 14 HELIX 4 4 GLU A 1210 VAL A 1214 5 5 HELIX 5 5 TRP A 1266 GLN A 1270 5 5 HELIX 6 6 SER A 1274 LEU A 1278 5 5 SHEET 1 AA 5 HIS A 887 ASP A 890 0 SHEET 2 AA 5 SER A 877 GLU A 884 -1 O ARG A 882 N ILE A 889 SHEET 3 AA 5 TYR A1066 PHE A1075 -1 O PHE A1072 N LEU A 881 SHEET 4 AA 5 ILE A 914 PHE A 917 -1 O ILE A 914 N ILE A1069 SHEET 5 AA 5 VAL A 904 PHE A 906 -1 O ASN A 905 N GLN A 915 SHEET 1 AB 7 HIS A 887 ASP A 890 0 SHEET 2 AB 7 SER A 877 GLU A 884 -1 O ARG A 882 N ILE A 889 SHEET 3 AB 7 TYR A1066 PHE A1075 -1 O PHE A1072 N LEU A 881 SHEET 4 AB 7 PHE A 941 ARG A 948 -1 O SER A 942 N PHE A1075 SHEET 5 AB 7 ILE A1015 ASN A1021 -1 O ILE A1015 N ILE A 947 SHEET 6 AB 7 ASN A1026 ILE A1031 -1 O LYS A1028 N THR A1020 SHEET 7 AB 7 ARG A1034 PRO A1040 -1 O ARG A1034 N ILE A1031 SHEET 1 AC 7 LYS A 897 ILE A 900 0 SHEET 2 AC 7 ILE A 924 ILE A 927 -1 O GLU A 925 N ASN A 899 SHEET 3 AC 7 ASN A1052 ASP A1058 -1 O ILE A1053 N VAL A 926 SHEET 4 AC 7 TYR A 962 GLU A 969 -1 O THR A 963 N ASP A1058 SHEET 5 AC 7 SER A 972 ASN A 979 -1 O SER A 972 N GLU A 969 SHEET 6 AC 7 GLU A 982 GLN A 988 -1 O GLU A 982 N ASN A 979 SHEET 7 AC 7 LYS A 994 LYS A1000 -1 O GLN A 995 N LEU A 987 SHEET 1 AD 2 ASN A 935 SER A 936 0 SHEET 2 AD 2 ILE A1047 HIS A1048 -1 O ILE A1047 N SER A 936 SHEET 1 AE 2 TYR A1112 ASN A1115 0 SHEET 2 AE 2 TRP A1282 ILE A1285 -1 O GLU A1283 N LEU A1114 SHEET 1 AF 4 TYR A1122 ASN A1126 0 SHEET 2 AF 4 TYR A1133 LYS A1137 -1 O TYR A1133 N ASN A1126 SHEET 3 AF 4 ILE A1258 SER A1264 -1 O ALA A1259 N LEU A1136 SHEET 4 AF 4 LYS A1204 ILE A1205 -1 O LYS A1204 N ALA A1263 SHEET 1 AG 7 TYR A1122 ASN A1126 0 SHEET 2 AG 7 TYR A1133 LYS A1137 -1 O TYR A1133 N ASN A1126 SHEET 3 AG 7 ILE A1258 SER A1264 -1 O ALA A1259 N LEU A1136 SHEET 4 AG 7 ASP A1246 PHE A1255 -1 O PHE A1249 N SER A1264 SHEET 5 AG 7 CYS A1235 GLN A1240 -1 O MET A1237 N ILE A1250 SHEET 6 AG 7 VAL A1220 SER A1225 -1 O VAL A1220 N GLN A1240 SHEET 7 AG 7 ARG A1179 VAL A1185 -1 O VAL A1180 N VAL A1221 SHEET 1 AH 2 SER A1142 THR A1145 0 SHEET 2 AH 2 TYR A1149 SER A1152 -1 O TYR A1149 N THR A1145 LINK O4 BGC B 1 C1 GAL B 2 1555 1555 1.42 LINK O4 GAL B 2 C1 NGA B 3 1555 1555 1.43 LINK O3 GAL B 2 C2 SIA B 6 1555 1555 1.42 LINK O3 NGA B 3 C1 GAL B 4 1555 1555 1.44 LINK O3 GAL B 4 C2 SIA B 5 1555 1555 1.44 LINK OD1 ASP A1089 MG MG A2298 1555 1555 2.09 LINK OD1 ASN A1093 MG MG A2298 1555 1555 1.95 LINK MG MG A2298 O HOH A3177 1555 1555 2.01 LINK MG MG A2298 O HOH A3318 1555 1555 2.09 LINK MG MG A2298 O HOH A3319 1555 1555 2.08 LINK MG MG A2298 O HOH A3321 1555 1555 2.03 CISPEP 1 GLY A 1138 PRO A 1139 0 6.33 CRYST1 72.700 116.110 105.520 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009477 0.00000