HEADER LIGASE 26-MAY-08 2VUG TITLE THE STRUCTURE OF AN ARCHAEAL HOMODIMERIC RNA LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAB1020; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: EACH MONOMER OF PAB1020 IS BOUND TO ONE MOLECULE OF COMPND 6 PHOSPHOAMINO PHOSPHONIC ACID-ADENYLATE ESTER (AMPPNP) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 3 ORGANISM_COMMON: PYROCOCCUS ABYSSI STR. ORSAY; SOURCE 4 ORGANISM_TAXID: 272844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SURE RIL; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-80L KEYWDS RNA, LIGASE, AMPPNP, PAB1020, PYROCOCCUS ABYSSI, NUCLEOTIDYL- KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.BROOKS,L.MESLET-CLADIERE,M.GRAILLE,J.KUHN,K.BLONDEAU, AUTHOR 2 H.MYLLYKALLIO,H.VAN TILBEURGH REVDAT 4 28-FEB-18 2VUG 1 SOURCE AUTHOR JRNL REVDAT 3 23-JUN-09 2VUG 1 JRNL REVDAT 2 24-FEB-09 2VUG 1 VERSN REVDAT 1 03-JUN-08 2VUG 0 JRNL AUTH M.A.BROOKS,L.MESLET-CLADIERE,M.GRAILLE,J.KUHN,K.BLONDEAU, JRNL AUTH 2 H.MYLLYKALLIO,H.VAN TILBEURGH JRNL TITL THE STRUCTURE OF AN ARCHAEAL HOMODIMERIC LIGASE WHICH HAS JRNL TITL 2 RNA CIRCULARIZATION ACTIVITY. JRNL REF PROTEIN SCI. V. 17 1336 2008 JRNL REFN ESSN 1469-896X JRNL PMID 18511537 JRNL DOI 10.1110/PS.035493.108 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6094 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.53000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 3.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.443 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.338 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.058 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6333 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8538 ; 1.273 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 744 ; 6.213 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;33.911 ;23.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1180 ;17.567 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;15.018 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 921 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4690 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3111 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4356 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 236 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.252 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.080 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3782 ; 1.398 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6019 ; 2.424 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2827 ; 3.645 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2519 ; 6.456 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 382 1 REMARK 3 1 B 7 B 382 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3039 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 3039 ; 0.30 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED RESIDUES IN CHAINS A, B: 10, 36, 37, 38. REMARK 4 REMARK 4 2VUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1290036359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20985 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% METHANE PENTANE-DIOL (MPD), 0-0.2M REMARK 280 NH4H2PO4 AND 0.1M TRIS-CL, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.48100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.62850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.48100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.62850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 TYR A 9 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 VAL B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 VAL B 8 REMARK 465 TYR B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 PHE A 37 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 PHE B 37 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 38 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 350 N ILE B 352 2.16 REMARK 500 O GLU A 350 N ILE A 352 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 -48.04 -135.41 REMARK 500 GLU A 20 -159.06 -96.20 REMARK 500 ASP A 21 0.31 -68.59 REMARK 500 GLU A 27 -9.15 -59.52 REMARK 500 LYS A 29 60.64 -151.21 REMARK 500 SER A 79 -171.15 -65.02 REMARK 500 PHE A 85 69.29 -101.49 REMARK 500 LYS A 86 -74.80 -37.47 REMARK 500 PRO A 128 -36.98 -36.33 REMARK 500 GLU A 152 68.14 -106.68 REMARK 500 TYR A 155 -97.18 -111.39 REMARK 500 GLU A 165 -167.54 -103.10 REMARK 500 ASP A 166 167.35 -47.94 REMARK 500 ILE A 167 154.45 -25.46 REMARK 500 ILE A 177 -146.70 -68.06 REMARK 500 LYS A 178 -63.35 12.00 REMARK 500 PHE A 259 -56.01 -26.24 REMARK 500 GLU A 313 -5.71 70.06 REMARK 500 LYS A 339 2.98 -65.09 REMARK 500 LEU A 340 -87.65 -149.12 REMARK 500 ILE A 346 -48.25 -134.14 REMARK 500 GLU A 351 31.95 -53.32 REMARK 500 ASP A 354 17.57 58.68 REMARK 500 LEU B 18 -46.58 -138.10 REMARK 500 ASP B 21 0.24 -67.28 REMARK 500 GLU B 27 -9.92 -59.08 REMARK 500 LYS B 29 60.64 -152.00 REMARK 500 PHE B 37 -39.02 -37.09 REMARK 500 SER B 79 -172.52 -68.23 REMARK 500 PHE B 85 69.98 -104.52 REMARK 500 LYS B 86 -70.17 -40.12 REMARK 500 PRO B 128 -31.83 -38.48 REMARK 500 GLU B 152 71.32 -105.18 REMARK 500 TYR B 155 -95.79 -115.41 REMARK 500 GLU B 165 -165.48 -102.36 REMARK 500 ILE B 167 153.81 -22.03 REMARK 500 PHE B 172 -4.91 -143.58 REMARK 500 ILE B 177 -141.74 -66.96 REMARK 500 LYS B 178 -64.31 6.61 REMARK 500 MET B 236 18.95 53.81 REMARK 500 PHE B 259 -54.05 -29.01 REMARK 500 GLU B 313 -3.72 67.52 REMARK 500 LYS B 339 5.76 -66.30 REMARK 500 LEU B 340 -87.71 -152.05 REMARK 500 ILE B 346 -47.54 -132.36 REMARK 500 GLU B 351 31.62 -51.16 REMARK 500 ASP B 354 18.75 55.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 505 DBREF 2VUG A -6 0 PDB 2VUG 2VUG -6 0 DBREF 2VUG A 1 382 UNP Q9UYG2 Q9UYG2_PYRAB 1 382 DBREF 2VUG B -6 0 PDB 2VUG 2VUG -6 0 DBREF 2VUG B 1 382 UNP Q9UYG2 Q9UYG2_PYRAB 1 382 SEQRES 1 A 389 MET HIS HIS HIS HIS HIS HIS MET LYS GLU VAL VAL SER SEQRES 2 A 389 SER VAL TYR LYS GLU ILE LEU VAL LYS LEU GLY LEU THR SEQRES 3 A 389 GLU ASP ARG ILE GLU THR LEU GLU MET LYS GLY GLY ILE SEQRES 4 A 389 ILE GLU ASP GLU PHE ASP GLY ILE ARG TYR VAL ARG PHE SEQRES 5 A 389 LYS ASP SER ALA GLY LYS LEU ARG ARG GLY THR VAL VAL SEQRES 6 A 389 ILE ASP GLU GLU TYR VAL ILE PRO GLY PHE PRO HIS ILE SEQRES 7 A 389 LYS ARG ILE ILE ASN LEU ARG SER GLY ILE ARG ARG ILE SEQRES 8 A 389 PHE LYS ARG GLY GLU PHE TYR VAL GLU GLU LYS VAL ASP SEQRES 9 A 389 GLY TYR ASN VAL ARG VAL VAL MET TYR LYS GLY LYS MET SEQRES 10 A 389 LEU GLY ILE THR ARG GLY GLY PHE ILE CYS PRO PHE THR SEQRES 11 A 389 THR GLU ARG ILE PRO ASP PHE VAL PRO GLN GLU PHE PHE SEQRES 12 A 389 LYS ASP ASN PRO ASN LEU ILE LEU VAL GLY GLU MET ALA SEQRES 13 A 389 GLY PRO GLU SER PRO TYR LEU VAL GLU GLY PRO PRO TYR SEQRES 14 A 389 VAL LYS GLU ASP ILE GLN PHE PHE LEU PHE ASP VAL GLN SEQRES 15 A 389 GLU ILE LYS THR GLY ARG SER LEU PRO VAL GLU GLU ARG SEQRES 16 A 389 LEU LYS ILE ALA GLU GLU TYR GLY ILE ASN HIS VAL GLU SEQRES 17 A 389 VAL PHE GLY LYS TYR THR LYS ASP ASP VAL ASP GLU LEU SEQRES 18 A 389 TYR GLN LEU ILE GLU ARG LEU SER LYS GLU GLY ARG GLU SEQRES 19 A 389 GLY ILE ILE MET LYS SER PRO ASP MET LYS LYS ILE VAL SEQRES 20 A 389 LYS TYR VAL THR PRO TYR ALA ASN ILE ASN ASP ILE LYS SEQRES 21 A 389 ILE GLY ALA ARG VAL PHE TYR GLU LEU PRO PRO GLY TYR SEQRES 22 A 389 PHE THR SER ARG ILE SER ARG LEU ALA PHE TYR LEU ALA SEQRES 23 A 389 GLU LYS ARG ILE LYS GLY GLU GLU PHE GLU ARG VAL ALA SEQRES 24 A 389 LYS GLU LEU GLY SER ALA LEU LEU GLN PRO PHE VAL GLU SEQRES 25 A 389 SER ILE PHE ASP VAL GLU GLN GLU GLU ASP ILE HIS GLU SEQRES 26 A 389 LEU PHE LYS VAL ARG VAL LYS ARG ILE GLU THR ALA TYR SEQRES 27 A 389 LYS MET VAL THR HIS PHE GLU LYS LEU GLY LEU LYS ILE SEQRES 28 A 389 GLU ILE VAL ASP ILE GLU GLU ILE LYS ASP GLY TRP ARG SEQRES 29 A 389 ILE THR PHE LYS ARG LEU TYR PRO ASP ALA THR ASN GLU SEQRES 30 A 389 ILE ARG GLU LEU ILE GLY GLY LYS ALA PHE VAL ASP SEQRES 1 B 389 MET HIS HIS HIS HIS HIS HIS MET LYS GLU VAL VAL SER SEQRES 2 B 389 SER VAL TYR LYS GLU ILE LEU VAL LYS LEU GLY LEU THR SEQRES 3 B 389 GLU ASP ARG ILE GLU THR LEU GLU MET LYS GLY GLY ILE SEQRES 4 B 389 ILE GLU ASP GLU PHE ASP GLY ILE ARG TYR VAL ARG PHE SEQRES 5 B 389 LYS ASP SER ALA GLY LYS LEU ARG ARG GLY THR VAL VAL SEQRES 6 B 389 ILE ASP GLU GLU TYR VAL ILE PRO GLY PHE PRO HIS ILE SEQRES 7 B 389 LYS ARG ILE ILE ASN LEU ARG SER GLY ILE ARG ARG ILE SEQRES 8 B 389 PHE LYS ARG GLY GLU PHE TYR VAL GLU GLU LYS VAL ASP SEQRES 9 B 389 GLY TYR ASN VAL ARG VAL VAL MET TYR LYS GLY LYS MET SEQRES 10 B 389 LEU GLY ILE THR ARG GLY GLY PHE ILE CYS PRO PHE THR SEQRES 11 B 389 THR GLU ARG ILE PRO ASP PHE VAL PRO GLN GLU PHE PHE SEQRES 12 B 389 LYS ASP ASN PRO ASN LEU ILE LEU VAL GLY GLU MET ALA SEQRES 13 B 389 GLY PRO GLU SER PRO TYR LEU VAL GLU GLY PRO PRO TYR SEQRES 14 B 389 VAL LYS GLU ASP ILE GLN PHE PHE LEU PHE ASP VAL GLN SEQRES 15 B 389 GLU ILE LYS THR GLY ARG SER LEU PRO VAL GLU GLU ARG SEQRES 16 B 389 LEU LYS ILE ALA GLU GLU TYR GLY ILE ASN HIS VAL GLU SEQRES 17 B 389 VAL PHE GLY LYS TYR THR LYS ASP ASP VAL ASP GLU LEU SEQRES 18 B 389 TYR GLN LEU ILE GLU ARG LEU SER LYS GLU GLY ARG GLU SEQRES 19 B 389 GLY ILE ILE MET LYS SER PRO ASP MET LYS LYS ILE VAL SEQRES 20 B 389 LYS TYR VAL THR PRO TYR ALA ASN ILE ASN ASP ILE LYS SEQRES 21 B 389 ILE GLY ALA ARG VAL PHE TYR GLU LEU PRO PRO GLY TYR SEQRES 22 B 389 PHE THR SER ARG ILE SER ARG LEU ALA PHE TYR LEU ALA SEQRES 23 B 389 GLU LYS ARG ILE LYS GLY GLU GLU PHE GLU ARG VAL ALA SEQRES 24 B 389 LYS GLU LEU GLY SER ALA LEU LEU GLN PRO PHE VAL GLU SEQRES 25 B 389 SER ILE PHE ASP VAL GLU GLN GLU GLU ASP ILE HIS GLU SEQRES 26 B 389 LEU PHE LYS VAL ARG VAL LYS ARG ILE GLU THR ALA TYR SEQRES 27 B 389 LYS MET VAL THR HIS PHE GLU LYS LEU GLY LEU LYS ILE SEQRES 28 B 389 GLU ILE VAL ASP ILE GLU GLU ILE LYS ASP GLY TRP ARG SEQRES 29 B 389 ILE THR PHE LYS ARG LEU TYR PRO ASP ALA THR ASN GLU SEQRES 30 B 389 ILE ARG GLU LEU ILE GLY GLY LYS ALA PHE VAL ASP HET ANP A 401 31 HET MPD A 501 8 HET MPD A 502 8 HET ANP B 401 31 HET MPD B 501 8 HET MPD B 502 8 HET MPD B 503 8 HET MRD B 504 8 HET MRD B 505 8 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 MPD 5(C6 H14 O2) FORMUL 10 MRD 2(C6 H14 O2) FORMUL 12 HOH *10(H2 O) HELIX 1 1 LYS A 10 GLY A 17 1 8 HELIX 2 2 ASP A 21 GLU A 27 1 7 HELIX 3 3 LEU A 77 PHE A 85 1 9 HELIX 4 4 CYS A 120 ILE A 127 1 8 HELIX 5 5 PRO A 128 PHE A 130 5 3 HELIX 6 6 GLN A 133 ASN A 139 1 7 HELIX 7 7 PRO A 184 GLY A 196 1 13 HELIX 8 8 ASP A 210 GLU A 224 1 15 HELIX 9 9 THR A 244 ARG A 257 1 14 HELIX 10 10 VAL A 258 LEU A 262 5 5 HELIX 11 11 PRO A 263 LYS A 281 1 19 HELIX 12 12 LYS A 284 GLN A 312 1 29 HELIX 13 13 ARG A 326 LYS A 339 1 14 HELIX 14 14 TYR A 364 GLY A 376 1 13 HELIX 15 15 LYS B 10 GLY B 17 1 8 HELIX 16 16 ASP B 21 GLU B 27 1 7 HELIX 17 17 LEU B 77 PHE B 85 1 9 HELIX 18 18 CYS B 120 ILE B 127 1 8 HELIX 19 19 PRO B 128 PHE B 130 5 3 HELIX 20 20 GLN B 133 ASN B 139 1 7 HELIX 21 21 PRO B 184 GLY B 196 1 13 HELIX 22 22 THR B 207 ASP B 209 5 3 HELIX 23 23 ASP B 210 GLU B 224 1 15 HELIX 24 24 THR B 244 ARG B 257 1 14 HELIX 25 25 VAL B 258 LEU B 262 5 5 HELIX 26 26 PRO B 263 LYS B 281 1 19 HELIX 27 27 LYS B 284 GLN B 312 1 29 HELIX 28 28 ARG B 326 LYS B 339 1 14 HELIX 29 29 TYR B 364 GLY B 376 1 13 SHEET 1 AA 4 ILE A 32 GLU A 34 0 SHEET 2 AA 4 TYR A 42 ARG A 44 -1 O TYR A 42 N GLU A 34 SHEET 3 AA 4 VAL A 57 ASP A 60 -1 O VAL A 58 N VAL A 43 SHEET 4 AA 4 TYR A 63 ILE A 65 -1 O TYR A 63 N ILE A 59 SHEET 1 AB 6 VAL A 202 THR A 207 0 SHEET 2 AB 6 GLU A 89 LYS A 95 -1 O PHE A 90 N TYR A 206 SHEET 3 AB 6 GLY A 228 LYS A 232 -1 O GLY A 228 N LYS A 95 SHEET 4 AB 6 ILE A 239 VAL A 243 -1 O VAL A 240 N MET A 231 SHEET 5 AB 6 LYS A 72 ILE A 74 1 O LYS A 72 N LYS A 241 SHEET 6 AB 6 ALA B 379 PHE B 380 -1 O PHE B 380 N ARG A 73 SHEET 1 AC 4 LYS A 109 THR A 114 0 SHEET 2 AC 4 TYR A 99 TYR A 106 -1 O ARG A 102 N ILE A 113 SHEET 3 AC 4 LEU A 142 ALA A 149 -1 O LEU A 144 N VAL A 103 SHEET 4 AC 4 GLN A 168 GLU A 176 -1 O GLN A 168 N ALA A 149 SHEET 1 AD 3 HIS A 317 VAL A 324 0 SHEET 2 AD 3 GLY A 355 LEU A 363 -1 O TRP A 356 N VAL A 324 SHEET 3 AD 3 LYS A 343 ILE A 352 -1 O ILE A 344 N LYS A 361 SHEET 1 BA 4 ILE B 32 GLU B 34 0 SHEET 2 BA 4 TYR B 42 ARG B 44 -1 O TYR B 42 N GLU B 34 SHEET 3 BA 4 VAL B 57 ASP B 60 -1 O VAL B 58 N VAL B 43 SHEET 4 BA 4 TYR B 63 ILE B 65 -1 O TYR B 63 N ILE B 59 SHEET 1 BB 5 LYS B 72 ARG B 73 0 SHEET 2 BB 5 ILE B 239 VAL B 243 1 O ILE B 239 N LYS B 72 SHEET 3 BB 5 GLY B 228 LYS B 232 -1 O ILE B 229 N TYR B 242 SHEET 4 BB 5 PHE B 90 LYS B 95 -1 O TYR B 91 N LYS B 232 SHEET 5 BB 5 VAL B 202 TYR B 206 -1 N PHE B 203 O VAL B 92 SHEET 1 BC 4 LYS B 109 THR B 114 0 SHEET 2 BC 4 TYR B 99 TYR B 106 -1 O ARG B 102 N ILE B 113 SHEET 3 BC 4 LEU B 142 ALA B 149 -1 O LEU B 144 N VAL B 103 SHEET 4 BC 4 GLN B 168 GLU B 176 -1 O GLN B 168 N ALA B 149 SHEET 1 BD 3 HIS B 317 VAL B 324 0 SHEET 2 BD 3 GLY B 355 LEU B 363 -1 O TRP B 356 N VAL B 324 SHEET 3 BD 3 LYS B 343 ILE B 352 -1 O ILE B 344 N LYS B 361 SITE 1 AC1 15 HIS A 70 ILE A 71 ARG A 73 GLU A 93 SITE 2 AC1 15 GLU A 94 LYS A 95 VAL A 96 ASN A 100 SITE 3 AC1 15 ARG A 115 GLU A 147 PHE A 172 VAL A 200 SITE 4 AC1 15 ILE A 230 LYS A 232 LYS A 241 SITE 1 AC2 4 GLN A 301 LYS B 284 PHE B 288 LYS B 353 SITE 1 AC3 4 VAL A 258 LEU A 262 ARG A 362 TYR A 364 SITE 1 AC4 18 ASP A 382 PHE B 68 HIS B 70 ILE B 71 SITE 2 AC4 18 ARG B 73 GLU B 93 GLU B 94 LYS B 95 SITE 3 AC4 18 VAL B 96 ASN B 100 ARG B 115 GLU B 147 SITE 4 AC4 18 PHE B 172 VAL B 200 ILE B 230 LYS B 232 SITE 5 AC4 18 LYS B 241 HOH B2007 SITE 1 AC5 3 GLU B 89 LYS B 205 GLU B 345 SITE 1 AC6 3 VAL B 157 ARG B 362 TYR B 364 SITE 1 AC7 2 TYR B 260 GLU B 370 SITE 1 AC8 5 ARG B 126 ASP B 129 LYS B 325 LYS B 353 SITE 2 AC8 5 ASP B 354 SITE 1 AC9 5 GLU B 219 SER B 222 ILE B 249 ARG B 290 SITE 2 AC9 5 GLU B 294 CRYST1 58.962 103.257 150.930 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006626 0.00000 MTRIX1 1 -0.986530 -0.001590 -0.163560 64.79380 1 MTRIX2 1 0.000370 -0.999970 0.007490 77.48051 1 MTRIX3 1 -0.163560 0.007330 0.986510 5.04134 1