data_2VUP # _entry.id 2VUP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VUP PDBE EBI-35915 WWPDB D_1290035915 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VUP _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-05-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Alphey, M.S.' 1 'Konig, J.' 2 'Fairlamb, A.H.' 3 # _citation.id primary _citation.title 'Structural and Mechanistic Insights Into Type II Trypanosomatid Tryparedoxin-Dependent Peroxidases.' _citation.journal_abbrev Biochem.J. _citation.journal_volume 414 _citation.page_first 375 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM BIJOAK _citation.country UK _citation.journal_id_ISSN 0264-6021 _citation.journal_id_CSD 0043 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18522537 _citation.pdbx_database_id_DOI 10.1042/BJ20080889 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Alphey, M.S.' 1 primary 'Konig, J.' 2 primary 'Fairlamb, A.H.' 3 # _cell.entry_id 2VUP _cell.length_a 43.260 _cell.length_b 32.700 _cell.length_c 58.310 _cell.angle_alpha 90.00 _cell.angle_beta 95.92 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VUP _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GLUTATHIONE PEROXIDASE-LIKE PROTEIN' 21139.055 1 1.11.1.9 ? ? ? 2 water nat water 18.015 96 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TRYPAREDOXIN-DEPENDANT PEROXIDASE, TRYPANOTHIONE/TRYPAREDOXIN DEPENDENT PEROXIDASE 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGGSHMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRD GVPVERFSPGASVKDIEKKLIPLLESTQSA ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGGSHMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRD GVPVERFSPGASVKDIEKKLIPLLESTQSA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 GLY n 1 20 SER n 1 21 HIS n 1 22 MET n 1 23 SER n 1 24 ALA n 1 25 ALA n 1 26 SER n 1 27 SER n 1 28 ILE n 1 29 PHE n 1 30 ASP n 1 31 PHE n 1 32 GLU n 1 33 VAL n 1 34 LEU n 1 35 ASP n 1 36 ALA n 1 37 ASP n 1 38 HIS n 1 39 LYS n 1 40 PRO n 1 41 TYR n 1 42 ASN n 1 43 LEU n 1 44 VAL n 1 45 GLN n 1 46 HIS n 1 47 LYS n 1 48 GLY n 1 49 SER n 1 50 PRO n 1 51 LEU n 1 52 LEU n 1 53 ILE n 1 54 TYR n 1 55 ASN n 1 56 VAL n 1 57 ALA n 1 58 SER n 1 59 LYS n 1 60 CYS n 1 61 GLY n 1 62 TYR n 1 63 THR n 1 64 LYS n 1 65 GLY n 1 66 GLY n 1 67 TYR n 1 68 GLU n 1 69 THR n 1 70 ALA n 1 71 THR n 1 72 THR n 1 73 LEU n 1 74 TYR n 1 75 ASN n 1 76 LYS n 1 77 TYR n 1 78 LYS n 1 79 SER n 1 80 GLN n 1 81 GLY n 1 82 PHE n 1 83 THR n 1 84 VAL n 1 85 LEU n 1 86 ALA n 1 87 PHE n 1 88 PRO n 1 89 CYS n 1 90 ASN n 1 91 GLN n 1 92 PHE n 1 93 GLY n 1 94 GLY n 1 95 GLN n 1 96 GLU n 1 97 PRO n 1 98 GLY n 1 99 ASN n 1 100 GLU n 1 101 GLU n 1 102 GLU n 1 103 ILE n 1 104 LYS n 1 105 GLU n 1 106 PHE n 1 107 VAL n 1 108 CYS n 1 109 THR n 1 110 LYS n 1 111 PHE n 1 112 LYS n 1 113 ALA n 1 114 GLU n 1 115 PHE n 1 116 PRO n 1 117 ILE n 1 118 MET n 1 119 ALA n 1 120 LYS n 1 121 ILE n 1 122 ASN n 1 123 VAL n 1 124 ASN n 1 125 GLY n 1 126 GLU n 1 127 ASN n 1 128 ALA n 1 129 HIS n 1 130 PRO n 1 131 LEU n 1 132 TYR n 1 133 GLU n 1 134 TYR n 1 135 MET n 1 136 LYS n 1 137 LYS n 1 138 THR n 1 139 LYS n 1 140 PRO n 1 141 GLY n 1 142 ILE n 1 143 LEU n 1 144 LYS n 1 145 THR n 1 146 LYS n 1 147 ALA n 1 148 ILE n 1 149 LYS n 1 150 TRP n 1 151 ASN n 1 152 PHE n 1 153 THR n 1 154 SER n 1 155 PHE n 1 156 LEU n 1 157 ILE n 1 158 ASP n 1 159 ARG n 1 160 ASP n 1 161 GLY n 1 162 VAL n 1 163 PRO n 1 164 VAL n 1 165 GLU n 1 166 ARG n 1 167 PHE n 1 168 SER n 1 169 PRO n 1 170 GLY n 1 171 ALA n 1 172 SER n 1 173 VAL n 1 174 LYS n 1 175 ASP n 1 176 ILE n 1 177 GLU n 1 178 LYS n 1 179 LYS n 1 180 LEU n 1 181 ILE n 1 182 PRO n 1 183 LEU n 1 184 LEU n 1 185 GLU n 1 186 SER n 1 187 THR n 1 188 GLN n 1 189 SER n 1 190 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 427 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'TRYPANOSOMA BRUCEI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5691 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VUP 1 ? ? 2VUP ? 2 UNP Q869A6_9TRYP 1 ? ? Q869A6 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VUP A 1 ? 21 ? 2VUP -20 ? 0 ? -20 0 2 2 2VUP A 22 ? 190 ? Q869A6 1 ? 169 ? 1 169 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2VUP _struct_ref_seq_dif.mon_id ASN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 99 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q869A6 _struct_ref_seq_dif.db_mon_id THR _struct_ref_seq_dif.pdbx_seq_db_seq_num 78 _struct_ref_seq_dif.details variant _struct_ref_seq_dif.pdbx_auth_seq_num 78 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VUP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 36.58 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 8.0' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2007-12-17 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VUP _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 58.00 _reflns.d_resolution_high 2.10 _reflns.number_obs 9469 _reflns.number_all ? _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.09 _reflns_shell.d_res_low 2.15 _reflns_shell.percent_possible_all 78.5 _reflns_shell.Rmerge_I_obs 0.26 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 12.20 _reflns_shell.pdbx_redundancy 2.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VUP _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9544 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 58.03 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.205 _refine.ls_R_factor_R_free 0.263 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.880 _refine.ls_number_reflns_R_free 456 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.898 _refine.B_iso_mean 27.52 _refine.aniso_B[1][1] 1.46100 _refine.aniso_B[2][2] -1.41200 _refine.aniso_B[3][3] -0.38800 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] -1.64100 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE N-TERMINAL HIS-TAG AND RESIDUES 1,2,167- 169 WERE DISORDERED AND NOT MODELLED. ; _refine.pdbx_starting_model 'PDB ENTRY 2P5Q' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.281 _refine.pdbx_overall_ESU_R_Free 0.223 _refine.overall_SU_ML 0.157 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.835 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1295 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 1391 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 58.03 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 1349 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.114 1.971 ? 1826 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.949 5.000 ? 169 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.078 25.500 ? 60 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.871 15.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.452 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 195 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1023 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.192 0.200 ? 629 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.302 0.200 ? 927 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.152 0.200 ? 100 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.194 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.201 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.591 1.500 ? 854 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.033 2.000 ? 1337 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.085 3.000 ? 567 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.711 4.500 ? 486 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.15 _refine_ls_shell.number_reflns_R_work 607 _refine_ls_shell.R_factor_R_work 0.2320 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2490 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VUP _struct.title 'Crystal structure of a type II tryparedoxin-dependant peroxidase from Trypanosoma brucei' _struct.pdbx_descriptor 'GLUTATHIONE PEROXIDASE-LIKE PROTEIN (E.C.1.11.1.9)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VUP _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'OXIDOREDUCTASE, PEROXIDASE, TRYPANOSOMA, TRYPANOTHIONE, DITHIOL-DEPENDANT PEROXIDASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 27 ? PHE A 31 ? SER A 6 PHE A 10 5 ? 5 HELX_P HELX_P2 2 LEU A 43 ? LYS A 47 ? LEU A 22 LYS A 26 5 ? 5 HELX_P HELX_P3 3 TYR A 62 ? TYR A 77 ? TYR A 41 TYR A 56 1 ? 16 HELX_P HELX_P4 5 GLU A 100 ? LYS A 110 ? GLU A 79 LYS A 89 1 ? 11 HELX_P HELX_P5 6 LEU A 131 ? LYS A 139 ? LEU A 110 LYS A 118 1 ? 9 HELX_P HELX_P6 8 ASP A 175 ? GLU A 185 ? ASP A 154 GLU A 164 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 38 ? ASN A 42 ? HIS A 17 ASN A 21 AA 2 GLU A 32 ? ALA A 36 ? GLU A 11 ALA A 15 AA 3 PHE A 115 ? ALA A 119 ? PHE A 94 ALA A 98 AA 4 PHE A 82 ? CYS A 89 ? PHE A 61 CYS A 68 AA 5 PRO A 50 ? ALA A 57 ? PRO A 29 ALA A 36 AA 6 PHE A 152 ? ILE A 157 ? PHE A 131 ILE A 136 AA 7 VAL A 164 ? SER A 168 ? VAL A 143 SER A 147 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 41 ? N TYR A 20 O VAL A 33 ? O VAL A 12 AA 2 3 O LEU A 34 ? O LEU A 13 N ALA A 119 ? N ALA A 98 AA 3 4 N MET A 118 ? N MET A 97 O ALA A 86 ? O ALA A 65 AA 4 5 N PHE A 87 ? N PHE A 66 O TYR A 54 ? O TYR A 33 AA 5 6 O ILE A 53 ? O ILE A 32 N PHE A 155 ? N PHE A 134 AA 6 7 O SER A 154 ? O SER A 133 N PHE A 167 ? N PHE A 146 # _database_PDB_matrix.entry_id 2VUP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VUP _atom_sites.fract_transf_matrix[1][1] 0.023116 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002397 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030581 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017242 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -20 ? ? ? A . n A 1 2 GLY 2 -19 ? ? ? A . n A 1 3 SER 3 -18 ? ? ? A . n A 1 4 SER 4 -17 ? ? ? A . n A 1 5 HIS 5 -16 ? ? ? A . n A 1 6 HIS 6 -15 ? ? ? A . n A 1 7 HIS 7 -14 ? ? ? A . n A 1 8 HIS 8 -13 ? ? ? A . n A 1 9 HIS 9 -12 ? ? ? A . n A 1 10 HIS 10 -11 ? ? ? A . n A 1 11 SER 11 -10 ? ? ? A . n A 1 12 SER 12 -9 ? ? ? A . n A 1 13 GLY 13 -8 ? ? ? A . n A 1 14 LEU 14 -7 ? ? ? A . n A 1 15 VAL 15 -6 ? ? ? A . n A 1 16 PRO 16 -5 ? ? ? A . n A 1 17 ARG 17 -4 ? ? ? A . n A 1 18 GLY 18 -3 ? ? ? A . n A 1 19 GLY 19 -2 ? ? ? A . n A 1 20 SER 20 -1 ? ? ? A . n A 1 21 HIS 21 0 ? ? ? A . n A 1 22 MET 22 1 ? ? ? A . n A 1 23 SER 23 2 ? ? ? A . n A 1 24 ALA 24 3 3 ALA ALA A . n A 1 25 ALA 25 4 4 ALA ALA A . n A 1 26 SER 26 5 5 SER SER A . n A 1 27 SER 27 6 6 SER SER A . n A 1 28 ILE 28 7 7 ILE ILE A . n A 1 29 PHE 29 8 8 PHE PHE A . n A 1 30 ASP 30 9 9 ASP ASP A . n A 1 31 PHE 31 10 10 PHE PHE A . n A 1 32 GLU 32 11 11 GLU GLU A . n A 1 33 VAL 33 12 12 VAL VAL A . n A 1 34 LEU 34 13 13 LEU LEU A . n A 1 35 ASP 35 14 14 ASP ASP A . n A 1 36 ALA 36 15 15 ALA ALA A . n A 1 37 ASP 37 16 16 ASP ASP A . n A 1 38 HIS 38 17 17 HIS HIS A . n A 1 39 LYS 39 18 18 LYS LYS A . n A 1 40 PRO 40 19 19 PRO PRO A . n A 1 41 TYR 41 20 20 TYR TYR A . n A 1 42 ASN 42 21 21 ASN ASN A . n A 1 43 LEU 43 22 22 LEU LEU A . n A 1 44 VAL 44 23 23 VAL VAL A . n A 1 45 GLN 45 24 24 GLN GLN A . n A 1 46 HIS 46 25 25 HIS HIS A . n A 1 47 LYS 47 26 26 LYS LYS A . n A 1 48 GLY 48 27 27 GLY GLY A . n A 1 49 SER 49 28 28 SER SER A . n A 1 50 PRO 50 29 29 PRO PRO A . n A 1 51 LEU 51 30 30 LEU LEU A . n A 1 52 LEU 52 31 31 LEU LEU A . n A 1 53 ILE 53 32 32 ILE ILE A . n A 1 54 TYR 54 33 33 TYR TYR A . n A 1 55 ASN 55 34 34 ASN ASN A . n A 1 56 VAL 56 35 35 VAL VAL A . n A 1 57 ALA 57 36 36 ALA ALA A . n A 1 58 SER 58 37 37 SER SER A . n A 1 59 LYS 59 38 38 LYS LYS A . n A 1 60 CYS 60 39 39 CYS CYS A . n A 1 61 GLY 61 40 40 GLY GLY A . n A 1 62 TYR 62 41 41 TYR TYR A . n A 1 63 THR 63 42 42 THR THR A . n A 1 64 LYS 64 43 43 LYS LYS A . n A 1 65 GLY 65 44 44 GLY GLY A . n A 1 66 GLY 66 45 45 GLY GLY A . n A 1 67 TYR 67 46 46 TYR TYR A . n A 1 68 GLU 68 47 47 GLU GLU A . n A 1 69 THR 69 48 48 THR THR A . n A 1 70 ALA 70 49 49 ALA ALA A . n A 1 71 THR 71 50 50 THR THR A . n A 1 72 THR 72 51 51 THR THR A . n A 1 73 LEU 73 52 52 LEU LEU A . n A 1 74 TYR 74 53 53 TYR TYR A . n A 1 75 ASN 75 54 54 ASN ASN A . n A 1 76 LYS 76 55 55 LYS LYS A . n A 1 77 TYR 77 56 56 TYR TYR A . n A 1 78 LYS 78 57 57 LYS LYS A . n A 1 79 SER 79 58 58 SER SER A . n A 1 80 GLN 80 59 59 GLN GLN A . n A 1 81 GLY 81 60 60 GLY GLY A . n A 1 82 PHE 82 61 61 PHE PHE A . n A 1 83 THR 83 62 62 THR THR A . n A 1 84 VAL 84 63 63 VAL VAL A . n A 1 85 LEU 85 64 64 LEU LEU A . n A 1 86 ALA 86 65 65 ALA ALA A . n A 1 87 PHE 87 66 66 PHE PHE A . n A 1 88 PRO 88 67 67 PRO PRO A . n A 1 89 CYS 89 68 68 CYS CYS A . n A 1 90 ASN 90 69 69 ASN ASN A . n A 1 91 GLN 91 70 70 GLN GLN A . n A 1 92 PHE 92 71 71 PHE PHE A . n A 1 93 GLY 93 72 72 GLY GLY A . n A 1 94 GLY 94 73 73 GLY GLY A . n A 1 95 GLN 95 74 74 GLN GLN A . n A 1 96 GLU 96 75 75 GLU GLU A . n A 1 97 PRO 97 76 76 PRO PRO A . n A 1 98 GLY 98 77 77 GLY GLY A . n A 1 99 ASN 99 78 78 ASN ASN A . n A 1 100 GLU 100 79 79 GLU GLU A . n A 1 101 GLU 101 80 80 GLU GLU A . n A 1 102 GLU 102 81 81 GLU GLU A . n A 1 103 ILE 103 82 82 ILE ILE A . n A 1 104 LYS 104 83 83 LYS LYS A . n A 1 105 GLU 105 84 84 GLU GLU A . n A 1 106 PHE 106 85 85 PHE PHE A . n A 1 107 VAL 107 86 86 VAL VAL A . n A 1 108 CYS 108 87 87 CYS CYS A . n A 1 109 THR 109 88 88 THR THR A . n A 1 110 LYS 110 89 89 LYS LYS A . n A 1 111 PHE 111 90 90 PHE PHE A . n A 1 112 LYS 112 91 91 LYS LYS A . n A 1 113 ALA 113 92 92 ALA ALA A . n A 1 114 GLU 114 93 93 GLU GLU A . n A 1 115 PHE 115 94 94 PHE PHE A . n A 1 116 PRO 116 95 95 PRO PRO A . n A 1 117 ILE 117 96 96 ILE ILE A . n A 1 118 MET 118 97 97 MET MET A . n A 1 119 ALA 119 98 98 ALA ALA A . n A 1 120 LYS 120 99 99 LYS LYS A . n A 1 121 ILE 121 100 100 ILE ILE A . n A 1 122 ASN 122 101 101 ASN ASN A . n A 1 123 VAL 123 102 102 VAL VAL A . n A 1 124 ASN 124 103 103 ASN ASN A . n A 1 125 GLY 125 104 104 GLY GLY A . n A 1 126 GLU 126 105 105 GLU GLU A . n A 1 127 ASN 127 106 106 ASN ASN A . n A 1 128 ALA 128 107 107 ALA ALA A . n A 1 129 HIS 129 108 108 HIS HIS A . n A 1 130 PRO 130 109 109 PRO PRO A . n A 1 131 LEU 131 110 110 LEU LEU A . n A 1 132 TYR 132 111 111 TYR TYR A . n A 1 133 GLU 133 112 112 GLU GLU A . n A 1 134 TYR 134 113 113 TYR TYR A . n A 1 135 MET 135 114 114 MET MET A . n A 1 136 LYS 136 115 115 LYS LYS A . n A 1 137 LYS 137 116 116 LYS LYS A . n A 1 138 THR 138 117 117 THR THR A . n A 1 139 LYS 139 118 118 LYS LYS A . n A 1 140 PRO 140 119 119 PRO PRO A . n A 1 141 GLY 141 120 120 GLY GLY A . n A 1 142 ILE 142 121 121 ILE ILE A . n A 1 143 LEU 143 122 122 LEU LEU A . n A 1 144 LYS 144 123 123 LYS LYS A . n A 1 145 THR 145 124 124 THR THR A . n A 1 146 LYS 146 125 125 LYS LYS A . n A 1 147 ALA 147 126 126 ALA ALA A . n A 1 148 ILE 148 127 127 ILE ILE A . n A 1 149 LYS 149 128 128 LYS LYS A . n A 1 150 TRP 150 129 129 TRP TRP A . n A 1 151 ASN 151 130 130 ASN ASN A . n A 1 152 PHE 152 131 131 PHE PHE A . n A 1 153 THR 153 132 132 THR THR A . n A 1 154 SER 154 133 133 SER SER A . n A 1 155 PHE 155 134 134 PHE PHE A . n A 1 156 LEU 156 135 135 LEU LEU A . n A 1 157 ILE 157 136 136 ILE ILE A . n A 1 158 ASP 158 137 137 ASP ASP A . n A 1 159 ARG 159 138 138 ARG ARG A . n A 1 160 ASP 160 139 139 ASP ASP A . n A 1 161 GLY 161 140 140 GLY GLY A . n A 1 162 VAL 162 141 141 VAL VAL A . n A 1 163 PRO 163 142 142 PRO PRO A . n A 1 164 VAL 164 143 143 VAL VAL A . n A 1 165 GLU 165 144 144 GLU GLU A . n A 1 166 ARG 166 145 145 ARG ARG A . n A 1 167 PHE 167 146 146 PHE PHE A . n A 1 168 SER 168 147 147 SER SER A . n A 1 169 PRO 169 148 148 PRO PRO A . n A 1 170 GLY 170 149 149 GLY GLY A . n A 1 171 ALA 171 150 150 ALA ALA A . n A 1 172 SER 172 151 151 SER SER A . n A 1 173 VAL 173 152 152 VAL VAL A . n A 1 174 LYS 174 153 153 LYS LYS A . n A 1 175 ASP 175 154 154 ASP ASP A . n A 1 176 ILE 176 155 155 ILE ILE A . n A 1 177 GLU 177 156 156 GLU GLU A . n A 1 178 LYS 178 157 157 LYS LYS A . n A 1 179 LYS 179 158 158 LYS LYS A . n A 1 180 LEU 180 159 159 LEU LEU A . n A 1 181 ILE 181 160 160 ILE ILE A . n A 1 182 PRO 182 161 161 PRO PRO A . n A 1 183 LEU 183 162 162 LEU LEU A . n A 1 184 LEU 184 163 163 LEU LEU A . n A 1 185 GLU 185 164 164 GLU GLU A . n A 1 186 SER 186 165 165 SER SER A . n A 1 187 THR 187 166 166 THR THR A . n A 1 188 GLN 188 167 ? ? ? A . n A 1 189 SER 189 168 ? ? ? A . n A 1 190 ALA 190 169 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . B 2 HOH 45 2045 2045 HOH HOH A . B 2 HOH 46 2046 2046 HOH HOH A . B 2 HOH 47 2047 2047 HOH HOH A . B 2 HOH 48 2048 2048 HOH HOH A . B 2 HOH 49 2049 2049 HOH HOH A . B 2 HOH 50 2050 2050 HOH HOH A . B 2 HOH 51 2051 2051 HOH HOH A . B 2 HOH 52 2052 2052 HOH HOH A . B 2 HOH 53 2053 2053 HOH HOH A . B 2 HOH 54 2054 2054 HOH HOH A . B 2 HOH 55 2055 2055 HOH HOH A . B 2 HOH 56 2056 2056 HOH HOH A . B 2 HOH 57 2057 2057 HOH HOH A . B 2 HOH 58 2058 2058 HOH HOH A . B 2 HOH 59 2059 2059 HOH HOH A . B 2 HOH 60 2060 2060 HOH HOH A . B 2 HOH 61 2061 2061 HOH HOH A . B 2 HOH 62 2062 2062 HOH HOH A . B 2 HOH 63 2063 2063 HOH HOH A . B 2 HOH 64 2064 2064 HOH HOH A . B 2 HOH 65 2065 2065 HOH HOH A . B 2 HOH 66 2066 2066 HOH HOH A . B 2 HOH 67 2067 2067 HOH HOH A . B 2 HOH 68 2068 2068 HOH HOH A . B 2 HOH 69 2069 2069 HOH HOH A . B 2 HOH 70 2070 2070 HOH HOH A . B 2 HOH 71 2071 2071 HOH HOH A . B 2 HOH 72 2072 2072 HOH HOH A . B 2 HOH 73 2073 2073 HOH HOH A . B 2 HOH 74 2074 2074 HOH HOH A . B 2 HOH 75 2075 2075 HOH HOH A . B 2 HOH 76 2076 2076 HOH HOH A . B 2 HOH 77 2077 2077 HOH HOH A . B 2 HOH 78 2078 2078 HOH HOH A . B 2 HOH 79 2079 2079 HOH HOH A . B 2 HOH 80 2080 2080 HOH HOH A . B 2 HOH 81 2081 2081 HOH HOH A . B 2 HOH 82 2082 2082 HOH HOH A . B 2 HOH 83 2083 2083 HOH HOH A . B 2 HOH 84 2084 2084 HOH HOH A . B 2 HOH 85 2085 2085 HOH HOH A . B 2 HOH 86 2086 2086 HOH HOH A . B 2 HOH 87 2087 2087 HOH HOH A . B 2 HOH 88 2088 2088 HOH HOH A . B 2 HOH 89 2089 2089 HOH HOH A . B 2 HOH 90 2090 2090 HOH HOH A . B 2 HOH 91 2091 2091 HOH HOH A . B 2 HOH 92 2092 2092 HOH HOH A . B 2 HOH 93 2093 2093 HOH HOH A . B 2 HOH 94 2094 2094 HOH HOH A . B 2 HOH 95 2095 2095 HOH HOH A . B 2 HOH 96 2096 2096 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-17 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; 700 ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_entry_details.entry_id 2VUP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;KYOTO ENCYCLOPEDIA OF GENES AND GENOMES (KEGG) DATABASE. THE AUTHOR SUGGESTS THR78ASN A NATURAL VARIANT. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 123 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 57.83 _pdbx_validate_torsion.psi 16.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 166 ? OG1 ? A THR 187 OG1 2 1 Y 1 A THR 166 ? CG2 ? A THR 187 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -20 ? A MET 1 2 1 Y 1 A GLY -19 ? A GLY 2 3 1 Y 1 A SER -18 ? A SER 3 4 1 Y 1 A SER -17 ? A SER 4 5 1 Y 1 A HIS -16 ? A HIS 5 6 1 Y 1 A HIS -15 ? A HIS 6 7 1 Y 1 A HIS -14 ? A HIS 7 8 1 Y 1 A HIS -13 ? A HIS 8 9 1 Y 1 A HIS -12 ? A HIS 9 10 1 Y 1 A HIS -11 ? A HIS 10 11 1 Y 1 A SER -10 ? A SER 11 12 1 Y 1 A SER -9 ? A SER 12 13 1 Y 1 A GLY -8 ? A GLY 13 14 1 Y 1 A LEU -7 ? A LEU 14 15 1 Y 1 A VAL -6 ? A VAL 15 16 1 Y 1 A PRO -5 ? A PRO 16 17 1 Y 1 A ARG -4 ? A ARG 17 18 1 Y 1 A GLY -3 ? A GLY 18 19 1 Y 1 A GLY -2 ? A GLY 19 20 1 Y 1 A SER -1 ? A SER 20 21 1 Y 1 A HIS 0 ? A HIS 21 22 1 Y 1 A MET 1 ? A MET 22 23 1 Y 1 A SER 2 ? A SER 23 24 1 Y 1 A GLN 167 ? A GLN 188 25 1 Y 1 A SER 168 ? A SER 189 26 1 Y 1 A ALA 169 ? A ALA 190 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #