HEADER TRANSFERASE 30-MAY-08 2VUW TITLE STRUCTURE OF HUMAN HASPIN KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE HASPIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 465-798; COMPND 5 SYNONYM: HASPIN, HAPLOID GERM CELL-SPECIFIC NUCLEAR PROTEIN KINASE, COMPND 6 H-HASPIN, GERM CELL-SPECIFIC GENE 2 PROTEIN; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: GERM CELL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 10 OTHER_DETAILS: EXPRESSION SYSTEM IS PHAGE RESISTANCE ROSETTA KEYWDS CELL CYCLE, TRANSFERASE, CASP8, NUCLEOTIDE BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.ESWARAN,J.W.MURRAY,P.FILIPPAKOPOULOS,M.SOUNDARARAJAN,A.C.W.PIKE, AUTHOR 2 F.VON DELFT,S.PICAUD,T.KEATES,O.KING,M.WICKSTROEM,C.BOUNTRA, AUTHOR 3 A.M.EDWARDS,C.H.ARROWSMITH,O.FEDOROV,N.BURGESS-BROWN,J.BRAY,S.KNAPP REVDAT 5 01-MAY-24 2VUW 1 REMARK LINK ATOM REVDAT 4 24-JAN-18 2VUW 1 AUTHOR REVDAT 3 01-SEP-10 2VUW 1 VERSN REVDAT 2 24-FEB-09 2VUW 1 VERSN REVDAT 1 16-SEP-08 2VUW 0 JRNL AUTH J.ESWARAN,D.PATNAIK,P.FILIPPAKOPOULOS,F.WANG,R.L.STEIN, JRNL AUTH 2 J.W.MURRAY,J.M.G.HIGGINS,S.KNAPP JRNL TITL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF THE ATYPICAL JRNL TITL 2 HUMAN KINASE HASPIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 20198 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19918057 JRNL DOI 10.1073/PNAS.0901989106 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 80685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 3548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4505 - 5.2561 0.99 3388 137 0.1904 0.1885 REMARK 3 2 5.2561 - 4.1747 0.99 3407 142 0.1174 0.1279 REMARK 3 3 4.1747 - 3.6478 1.00 3372 169 0.1212 0.1270 REMARK 3 4 3.6478 - 3.3147 0.99 3324 193 0.1262 0.1577 REMARK 3 5 3.3147 - 3.0773 0.99 3375 178 0.1343 0.1635 REMARK 3 6 3.0773 - 2.8960 0.99 3367 136 0.1380 0.1850 REMARK 3 7 2.8960 - 2.7510 0.99 3389 119 0.1482 0.1789 REMARK 3 8 2.7510 - 2.6313 0.98 3357 143 0.1379 0.1911 REMARK 3 9 2.6313 - 2.5301 0.98 3342 154 0.1328 0.1733 REMARK 3 10 2.5301 - 2.4428 0.98 3283 156 0.1225 0.1570 REMARK 3 11 2.4428 - 2.3664 0.98 3351 151 0.1250 0.1477 REMARK 3 12 2.3664 - 2.2988 0.97 3287 165 0.1278 0.1499 REMARK 3 13 2.2988 - 2.2383 0.96 3220 167 0.1240 0.1636 REMARK 3 14 2.2383 - 2.1837 0.96 3245 162 0.1323 0.1997 REMARK 3 15 2.1837 - 2.1341 0.95 3255 158 0.1378 0.1757 REMARK 3 16 2.1341 - 2.0887 0.94 3221 144 0.1466 0.1790 REMARK 3 17 2.0887 - 2.0469 0.93 3073 171 0.1553 0.1834 REMARK 3 18 2.0469 - 2.0083 0.92 3129 161 0.1758 0.1924 REMARK 3 19 2.0083 - 1.9724 0.90 3106 120 0.1736 0.1732 REMARK 3 20 1.9724 - 1.9390 0.86 2955 119 0.1884 0.2590 REMARK 3 21 1.9390 - 1.9077 0.81 2772 90 0.2005 0.1941 REMARK 3 22 1.9077 - 1.8784 0.75 2532 117 0.2153 0.2019 REMARK 3 23 1.8784 - 1.8507 0.68 2323 118 0.2286 0.2450 REMARK 3 24 1.8507 - 1.8247 0.64 2184 98 0.2632 0.2567 REMARK 3 25 1.8247 - 1.8000 0.55 1880 80 0.2642 0.2804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 43.72 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.36630 REMARK 3 B22 (A**2) : -4.11000 REMARK 3 B33 (A**2) : 2.74370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5364 REMARK 3 ANGLE : 1.090 9674 REMARK 3 CHIRALITY : 0.100 428 REMARK 3 PLANARITY : 0.000 815 REMARK 3 DIHEDRAL : 16.140 1357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 467:489) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2332 -25.0889 -5.3541 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.1792 REMARK 3 T33: 0.2251 T12: 0.0231 REMARK 3 T13: -0.0413 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.3080 L22: 0.8176 REMARK 3 L33: 0.2973 L12: -0.0015 REMARK 3 L13: 0.2603 L23: 0.2621 REMARK 3 S TENSOR REMARK 3 S11: 0.0896 S12: 0.0272 S13: -0.1493 REMARK 3 S21: 0.1724 S22: 0.0611 S23: 0.0278 REMARK 3 S31: 0.1039 S32: 0.1600 S33: -0.1393 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 490:609) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7969 -14.4509 -4.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.1184 REMARK 3 T33: 0.0895 T12: 0.0041 REMARK 3 T13: -0.0046 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.6696 L22: 0.8033 REMARK 3 L33: 0.6902 L12: -0.2160 REMARK 3 L13: 0.3626 L23: -0.1297 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: -0.0609 S13: -0.0498 REMARK 3 S21: 0.0680 S22: 0.0877 S23: -0.0541 REMARK 3 S31: -0.0476 S32: 0.0096 S33: -0.0182 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 610:711) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7011 -5.9429 -14.8612 REMARK 3 T TENSOR REMARK 3 T11: 0.0140 T22: 0.0559 REMARK 3 T33: 0.0190 T12: -0.0093 REMARK 3 T13: 0.0083 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.5623 L22: 1.5255 REMARK 3 L33: 0.2944 L12: -0.6065 REMARK 3 L13: 0.0446 L23: -0.4774 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0469 S13: 0.0086 REMARK 3 S21: -0.0472 S22: 0.0414 S23: 0.0110 REMARK 3 S31: -0.0206 S32: 0.0250 S33: -0.0385 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 712:734) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2877 8.7086 -5.1596 REMARK 3 T TENSOR REMARK 3 T11: 0.2759 T22: 0.1599 REMARK 3 T33: 0.2423 T12: -0.0019 REMARK 3 T13: -0.0229 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 0.6893 L22: 0.3120 REMARK 3 L33: 1.1327 L12: 0.0452 REMARK 3 L13: 0.0816 L23: -0.2554 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: -0.2315 S13: 0.4580 REMARK 3 S21: 0.3293 S22: 0.1611 S23: -0.0844 REMARK 3 S31: -0.4754 S32: 0.0652 S33: -0.0039 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 735:799) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9523 4.3446 -23.4866 REMARK 3 T TENSOR REMARK 3 T11: 0.1006 T22: 0.0749 REMARK 3 T33: 0.0742 T12: 0.0359 REMARK 3 T13: 0.0103 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 0.8088 L22: 1.1075 REMARK 3 L33: 0.2760 L12: -0.8009 REMARK 3 L13: 0.2071 L23: -0.1660 REMARK 3 S TENSOR REMARK 3 S11: 0.1514 S12: 0.1388 S13: 0.1728 REMARK 3 S21: -0.2233 S22: -0.1189 S23: -0.0361 REMARK 3 S31: -0.1219 S32: 0.0055 S33: -0.0253 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESID 1:1) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4196 -10.6381 -10.7656 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.1896 REMARK 3 T33: 0.1704 T12: 0.0034 REMARK 3 T13: -0.0325 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.5653 L22: 0.1475 REMARK 3 L33: -0.0534 L12: 0.1212 REMARK 3 L13: -0.3124 L23: 0.1833 REMARK 3 S TENSOR REMARK 3 S11: -0.0774 S12: 0.1149 S13: -0.0594 REMARK 3 S21: 0.0773 S22: -0.0983 S23: -0.0802 REMARK 3 S31: -0.0659 S32: 0.0458 S33: 0.0764 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IODINE IONS AS A RESULT OF RADIOLYTIC REMARK 3 CLEAVAGE OF THE 5-IODOTUBERCIDIN LIGAND REMARK 4 REMARK 4 2VUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1290036448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97640 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45276 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.480 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.49 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: EXPERIMENTALLY PHASED STRUCTURE FROM ANOTHER REMARK 200 CRYSTAL OF THE SAME CONSTRUCT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SPG, 60% MPG REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.33050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.93000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.38750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.93000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.33050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.38750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 463 REMARK 465 MSE A 464 REMARK 465 GLY A 465 REMARK 465 GLU A 466 REMARK 465 CYS A 467 REMARK 465 SER A 468 REMARK 465 GLN A 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 470 LYS A 659 CD CE NZ REMARK 470 LYS A 663 CE NZ REMARK 470 LYS A 672 CE NZ REMARK 470 GLU A 708 CG CD OE1 OE2 REMARK 470 LYS A 727 CE NZ REMARK 470 LYS A 773 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2023 O HOH A 2024 2.15 REMARK 500 O HOH A 2103 O HOH A 2104 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 516 -1.84 71.26 REMARK 500 PHE A 556 -148.28 -93.28 REMARK 500 ARG A 648 -0.86 71.93 REMARK 500 ASP A 649 45.51 -156.04 REMARK 500 LEU A 650 58.48 -90.69 REMARK 500 ASP A 687 94.60 73.13 REMARK 500 GLU A 708 -62.09 -96.92 REMARK 500 ASN A 763 14.14 -140.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2195 DISTANCE = 5.96 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 IODIDE ION (IOD): PRODUCED BY RADIOLYTIC CLEAVAGE OF THE REMARK 600 5-IODOTUBERCIDIN LIGAND REMARK 600 (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3- REMARK 600 D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN- 3, REMARK 600 4-DIOL (5ID): 5-IODOTUBERCIDIN REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1801 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 477 NE2 REMARK 620 2 HIS A 563 NE2 95.9 REMARK 620 3 HOH A2005 O 92.2 96.0 REMARK 620 4 HOH A2006 O 89.7 92.3 171.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1799 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5ID A 1800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1803 DBREF 2VUW A 465 798 UNP Q8TF76 HASP_HUMAN 465 798 SEQADV 2VUW SER A 463 UNP Q8TF76 EXPRESSION TAG SEQADV 2VUW MSE A 464 UNP Q8TF76 EXPRESSION TAG SEQRES 1 A 336 SER MSE GLY GLU CYS SER GLN LYS GLY PRO VAL PRO PHE SEQRES 2 A 336 SER HIS CYS LEU PRO THR GLU LYS LEU GLN ARG CYS GLU SEQRES 3 A 336 LYS ILE GLY GLU GLY VAL PHE GLY GLU VAL PHE GLN THR SEQRES 4 A 336 ILE ALA ASP HIS THR PRO VAL ALA ILE LYS ILE ILE ALA SEQRES 5 A 336 ILE GLU GLY PRO ASP LEU VAL ASN GLY SER HIS GLN LYS SEQRES 6 A 336 THR PHE GLU GLU ILE LEU PRO GLU ILE ILE ILE SER LYS SEQRES 7 A 336 GLU LEU SER LEU LEU SER GLY GLU VAL CYS ASN ARG THR SEQRES 8 A 336 GLU GLY PHE ILE GLY LEU ASN SER VAL HIS CYS VAL GLN SEQRES 9 A 336 GLY SER TYR PRO PRO LEU LEU LEU LYS ALA TRP ASP HIS SEQRES 10 A 336 TYR ASN SER THR LYS GLY SER ALA ASN ASP ARG PRO ASP SEQRES 11 A 336 PHE PHE LYS ASP ASP GLN LEU PHE ILE VAL LEU GLU PHE SEQRES 12 A 336 GLU PHE GLY GLY ILE ASP LEU GLU GLN MSE ARG THR LYS SEQRES 13 A 336 LEU SER SER LEU ALA THR ALA LYS SER ILE LEU HIS GLN SEQRES 14 A 336 LEU THR ALA SER LEU ALA VAL ALA GLU ALA SER LEU ARG SEQRES 15 A 336 PHE GLU HIS ARG ASP LEU HIS TRP GLY ASN VAL LEU LEU SEQRES 16 A 336 LYS LYS THR SER LEU LYS LYS LEU HIS TYR THR LEU ASN SEQRES 17 A 336 GLY LYS SER SER THR ILE PRO SER CYS GLY LEU GLN VAL SEQRES 18 A 336 SER ILE ILE ASP TYR THR LEU SER ARG LEU GLU ARG ASP SEQRES 19 A 336 GLY ILE VAL VAL PHE CYS ASP VAL SER MSE ASP GLU ASP SEQRES 20 A 336 LEU PHE THR GLY ASP GLY ASP TYR GLN PHE ASP ILE TYR SEQRES 21 A 336 ARG LEU MSE LYS LYS GLU ASN ASN ASN ARG TRP GLY GLU SEQRES 22 A 336 TYR HIS PRO TYR SER ASN VAL LEU TRP LEU HIS TYR LEU SEQRES 23 A 336 THR ASP LYS MSE LEU LYS GLN MSE THR PHE LYS THR LYS SEQRES 24 A 336 CYS ASN THR PRO ALA MSE LYS GLN ILE LYS ARG LYS ILE SEQRES 25 A 336 GLN GLU PHE HIS ARG THR MSE LEU ASN PHE SER SER ALA SEQRES 26 A 336 THR ASP LEU LEU CYS GLN HIS SER LEU PHE LYS MODRES 2VUW MSE A 615 MET SELENOMETHIONINE MODRES 2VUW MSE A 706 MET SELENOMETHIONINE MODRES 2VUW MSE A 725 MET SELENOMETHIONINE MODRES 2VUW MSE A 752 MET SELENOMETHIONINE MODRES 2VUW MSE A 756 MET SELENOMETHIONINE MODRES 2VUW MSE A 767 MET SELENOMETHIONINE MODRES 2VUW MSE A 781 MET SELENOMETHIONINE HET MSE A 615 17 HET MSE A 706 17 HET MSE A 725 17 HET MSE A 752 17 HET MSE A 756 17 HET MSE A 767 22 HET MSE A 781 17 HET IOD A1799 2 HET 5ID A1800 20 HET NI A1801 1 HET DMS A1802 4 HET MPD A1803 22 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION HETNAM 5ID (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3- HETNAM 2 5ID D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3, HETNAM 3 5ID 4-DIOL HETNAM NI NICKEL (II) ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN 5ID 5-IODOTUBERCIDIN FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 IOD I 1- FORMUL 3 5ID C11 H13 I N4 O4 FORMUL 4 NI NI 2+ FORMUL 5 DMS C2 H6 O S FORMUL 6 MPD C6 H14 O2 FORMUL 7 HOH *398(H2 O) HELIX 1 1 PRO A 474 LEU A 479 1 6 HELIX 2 2 PRO A 480 ARG A 486 1 7 HELIX 3 3 THR A 528 LEU A 545 1 18 HELIX 4 4 SER A 546 GLU A 548 5 3 HELIX 5 5 PRO A 570 LYS A 584 1 15 HELIX 6 6 GLU A 613 ARG A 616 5 4 HELIX 7 7 SER A 621 ARG A 644 1 24 HELIX 8 8 HIS A 651 GLY A 653 5 3 HELIX 9 9 GLU A 708 THR A 712 5 5 HELIX 10 10 ASP A 716 ASN A 730 1 15 HELIX 11 11 PRO A 738 GLN A 755 1 18 HELIX 12 12 THR A 764 MSE A 781 1 18 HELIX 13 13 LEU A 782 PHE A 784 5 3 HELIX 14 14 SER A 786 HIS A 794 1 9 HELIX 15 15 SER A 795 LYS A 798 5 4 SHEET 1 AA 5 GLU A 488 GLY A 493 0 SHEET 2 AA 5 GLY A 496 ALA A 503 -1 O GLY A 496 N GLY A 493 SHEET 3 AA 5 THR A 506 ILE A 515 -1 O THR A 506 N ALA A 503 SHEET 4 AA 5 LEU A 599 GLU A 606 -1 O LEU A 599 N ILE A 515 SHEET 5 AA 5 LEU A 559 GLN A 566 -1 N ASN A 560 O GLU A 604 SHEET 1 AB 3 ILE A 610 ASP A 611 0 SHEET 2 AB 3 VAL A 655 LYS A 659 -1 O LEU A 657 N ILE A 610 SHEET 3 AB 3 LEU A 681 ILE A 685 -1 O GLN A 682 N LYS A 658 SHEET 1 AC 2 LYS A 664 LEU A 669 0 SHEET 2 AC 2 LYS A 672 PRO A 677 -1 O LYS A 672 N LEU A 669 SHEET 1 AD 2 LEU A 693 ARG A 695 0 SHEET 2 AD 2 ILE A 698 VAL A 700 -1 O ILE A 698 N ARG A 695 LINK C GLN A 614 N MSE A 615 1555 1555 1.32 LINK C MSE A 615 N ARG A 616 1555 1555 1.34 LINK C SER A 705 N MSE A 706 1555 1555 1.33 LINK C MSE A 706 N ASP A 707 1555 1555 1.32 LINK C LEU A 724 N MSE A 725 1555 1555 1.34 LINK C MSE A 725 N LYS A 726 1555 1555 1.32 LINK C LYS A 751 N MSE A 752 1555 1555 1.33 LINK C MSE A 752 N LEU A 753 1555 1555 1.33 LINK C GLN A 755 N MSE A 756 1555 1555 1.31 LINK C MSE A 756 N THR A 757 1555 1555 1.32 LINK C ALA A 766 N MSE A 767 1555 1555 1.34 LINK C MSE A 767 N LYS A 768 1555 1555 1.32 LINK C THR A 780 N MSE A 781 1555 1555 1.33 LINK C MSE A 781 N LEU A 782 1555 1555 1.33 LINK NE2 HIS A 477 NI NI A1801 1555 1555 2.19 LINK NE2 HIS A 563 NI NI A1801 1555 1555 2.18 LINK NI NI A1801 O HOH A2005 1555 1555 2.09 LINK NI NI A1801 O HOH A2006 1555 1555 2.17 SITE 1 AC1 4 LYS A 511 ASP A 687 5ID A1800 HOH A2259 SITE 1 AC2 19 ILE A 490 GLY A 491 ALA A 509 PHE A 605 SITE 2 AC2 19 GLU A 606 PHE A 607 GLY A 608 GLY A 609 SITE 3 AC2 19 ASP A 611 GLY A 653 LEU A 656 ILE A 686 SITE 4 AC2 19 IOD A1799 HOH A2025 HOH A2167 HOH A2168 SITE 5 AC2 19 HOH A2214 HOH A2396 HOH A2397 SITE 1 AC3 5 HIS A 477 HIS A 563 HOH A2005 HOH A2006 SITE 2 AC3 5 HOH A2189 SITE 1 AC4 4 TYR A 667 LYS A 672 SER A 674 HOH A2236 SITE 1 AC5 5 PRO A 571 ARG A 695 ILE A 698 VAL A 700 SITE 2 AC5 5 HOH A2398 CRYST1 78.661 78.775 79.860 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012522 0.00000