data_2VUZ # _entry.id 2VUZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VUZ pdb_00002vuz 10.2210/pdb2vuz/pdb PDBE EBI-36457 ? ? WWPDB D_1290036457 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2VUV _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF CODAKINE AT 1.3A RESOLUTION' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VUZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-06-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gourdine, J.P.' 1 'Cioci, G.C.' 2 'Miguet, L.' 3 'Unverzagt, C.' 4 'Varrot, A.' 5 'Gauthier, C.' 6 'Smith-Ravin, E.J.' 7 'Imberty, A.' 8 # _citation.id primary _citation.title ;High Affinity Interaction between a Bivalve C-Type Lectin and a Biantennary Complex-Type N-Glycan Revealed by Crystallography and Microcalorimetry. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 30112 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18687680 _citation.pdbx_database_id_DOI 10.1074/JBC.M804353200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gourdine, J.P.' 1 ? primary 'Cioci, G.C.' 2 ? primary 'Miguet, L.' 3 ? primary 'Unverzagt, C.' 4 ? primary 'Silva, D.V.' 5 ? primary 'Varrot, A.' 6 ? primary 'Gautier, C.' 7 ? primary 'Smith-Ravin, E.J.' 8 ? primary 'Imberty, A.' 9 ? # _cell.entry_id 2VUZ _cell.length_a 32.163 _cell.length_b 100.197 _cell.length_c 95.738 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VUZ _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat CODAKINE 14187.471 1 ? ? 'RESIDUES 20-148' ? 2 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 1317.209 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 5 water nat water 18.015 121 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCPDGWTQFLDLCYIYQSAKASWASAQSSCQALGGILAEPDTACENEVLIHMCKENGDAGSFGPWLGGQKVGGAWQWSSS GAAFDYLRWG(HYP)NEPNNSGGNEDCLHYNWLSWNDLRCHYQASYLCQRAAE ; _entity_poly.pdbx_seq_one_letter_code_can ;GCPDGWTQFLDLCYIYQSAKASWASAQSSCQALGGILAEPDTACENEVLIHMCKENGDAGSFGPWLGGQKVGGAWQWSSS GAAFDYLRWGPNEPNNSGGNEDCLHYNWLSWNDLRCHYQASYLCQRAAE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 CYS n 1 3 PRO n 1 4 ASP n 1 5 GLY n 1 6 TRP n 1 7 THR n 1 8 GLN n 1 9 PHE n 1 10 LEU n 1 11 ASP n 1 12 LEU n 1 13 CYS n 1 14 TYR n 1 15 ILE n 1 16 TYR n 1 17 GLN n 1 18 SER n 1 19 ALA n 1 20 LYS n 1 21 ALA n 1 22 SER n 1 23 TRP n 1 24 ALA n 1 25 SER n 1 26 ALA n 1 27 GLN n 1 28 SER n 1 29 SER n 1 30 CYS n 1 31 GLN n 1 32 ALA n 1 33 LEU n 1 34 GLY n 1 35 GLY n 1 36 ILE n 1 37 LEU n 1 38 ALA n 1 39 GLU n 1 40 PRO n 1 41 ASP n 1 42 THR n 1 43 ALA n 1 44 CYS n 1 45 GLU n 1 46 ASN n 1 47 GLU n 1 48 VAL n 1 49 LEU n 1 50 ILE n 1 51 HIS n 1 52 MET n 1 53 CYS n 1 54 LYS n 1 55 GLU n 1 56 ASN n 1 57 GLY n 1 58 ASP n 1 59 ALA n 1 60 GLY n 1 61 SER n 1 62 PHE n 1 63 GLY n 1 64 PRO n 1 65 TRP n 1 66 LEU n 1 67 GLY n 1 68 GLY n 1 69 GLN n 1 70 LYS n 1 71 VAL n 1 72 GLY n 1 73 GLY n 1 74 ALA n 1 75 TRP n 1 76 GLN n 1 77 TRP n 1 78 SER n 1 79 SER n 1 80 SER n 1 81 GLY n 1 82 ALA n 1 83 ALA n 1 84 PHE n 1 85 ASP n 1 86 TYR n 1 87 LEU n 1 88 ARG n 1 89 TRP n 1 90 GLY n 1 91 HYP n 1 92 ASN n 1 93 GLU n 1 94 PRO n 1 95 ASN n 1 96 ASN n 1 97 SER n 1 98 GLY n 1 99 GLY n 1 100 ASN n 1 101 GLU n 1 102 ASP n 1 103 CYS n 1 104 LEU n 1 105 HIS n 1 106 TYR n 1 107 ASN n 1 108 TRP n 1 109 LEU n 1 110 SER n 1 111 TRP n 1 112 ASN n 1 113 ASP n 1 114 LEU n 1 115 ARG n 1 116 CYS n 1 117 HIS n 1 118 TYR n 1 119 GLN n 1 120 ALA n 1 121 SER n 1 122 TYR n 1 123 LEU n 1 124 CYS n 1 125 GLN n 1 126 ARG n 1 127 ALA n 1 128 ALA n 1 129 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'CODAKIA ORBICULARIS' _entity_src_nat.pdbx_ncbi_taxonomy_id 13016 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3KVL7_9BIVA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q3KVL7 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2VUZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q3KVL7 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 148 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 129 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2VUZ _struct_ref_seq_dif.mon_id LYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 54 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q3KVL7 _struct_ref_seq_dif.db_mon_id ARG _struct_ref_seq_dif.pdbx_seq_db_seq_num 73 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 54 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VUZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 43 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2M LITHIUM SULFATE IN 100 MM SODIUM ACETATE PH 7.5 WITH 15% PEG 4000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SI111 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97618 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.97618 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VUZ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.60 _reflns.d_resolution_high 1.70 _reflns.number_obs 17204 _reflns.number_all ? _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.30 _reflns.B_iso_Wilson_estimate 19.70 _reflns.pdbx_redundancy 5.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.74 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.38 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.00 _reflns_shell.pdbx_redundancy 5.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VUZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16302 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.13 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 98.2 _refine.ls_R_factor_obs 0.204 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 874 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 18.48 _refine.aniso_B[1][1] 1.28000 _refine.aniso_B[2][2] 0.52000 _refine.aniso_B[3][3] -1.79000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2VUV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.117 _refine.pdbx_overall_ESU_R_Free 0.125 _refine.overall_SU_ML 0.091 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.773 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 997 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 109 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1227 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 50.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.021 ? 1178 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 769 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.763 2.016 ? 1618 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.980 3.007 ? 1844 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.997 5.000 ? 136 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.288 25.185 ? 54 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.863 15.000 ? 151 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.068 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 174 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1280 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 231 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 242 'X-RAY DIFFRACTION' ? r_nbd_other 0.200 0.200 ? 850 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.190 0.200 ? 559 'X-RAY DIFFRACTION' ? r_nbtor_other 0.090 0.200 ? 580 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.173 0.200 ? 87 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.388 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.254 0.200 ? 32 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.144 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.141 1.500 ? 676 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.792 2.000 ? 1036 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.306 3.000 ? 599 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.250 4.500 ? 581 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.74 _refine_ls_shell.number_reflns_R_work 1171 _refine_ls_shell.R_factor_R_work 0.3040 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3630 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VUZ _struct.title 'Crystal structure of Codakine in complex with biantennary nonasaccharide at 1.7A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VUZ _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text ;NONASACCHARIDE, CODAKIA ORBICULARIS, SUGAR-BINDING PROTEIN, C-TYPE, LECTIN, CODAKINE, BIANTENNARY, INVERTEBRATE, SUGAR BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 22 ? LEU A 33 ? SER A 22 LEU A 33 1 ? 12 HELX_P HELX_P2 2 THR A 42 ? ASN A 56 ? THR A 42 ASN A 56 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 13 SG ? ? A CYS 2 A CYS 13 1_555 ? ? ? ? ? ? ? 2.052 ? ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 124 SG ? ? A CYS 30 A CYS 124 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf3 disulf ? ? A CYS 44 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 44 A CYS 44 4_555 ? ? ? ? ? ? ? 2.335 ? ? disulf4 disulf ? ? A CYS 103 SG ? ? ? 1_555 A CYS 116 SG ? ? A CYS 103 A CYS 116 1_555 ? ? ? ? ? ? ? 2.049 ? ? covale1 covale both ? A GLY 90 C ? ? ? 1_555 A HYP 91 N ? ? A GLY 90 A HYP 91 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale2 covale both ? A HYP 91 C ? ? ? 1_555 A ASN 92 N ? ? A HYP 91 A ASN 92 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale5 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.407 ? ? covale6 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 6 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale7 covale both ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? B MAN 4 B NAG 5 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale8 covale both ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? B MAN 6 B NAG 7 1_555 ? ? ? ? ? ? ? 1.422 ? ? metalc1 metalc ? ? A GLU 93 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 93 A CA 201 1_555 ? ? ? ? ? ? ? 2.702 ? ? metalc2 metalc ? ? A ASN 95 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 95 A CA 201 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc3 metalc ? ? A GLU 101 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 101 A CA 201 1_555 ? ? ? ? ? ? ? 2.580 ? ? metalc4 metalc ? ? A ASN 112 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 112 A CA 201 1_555 ? ? ? ? ? ? ? 2.402 ? ? metalc5 metalc ? ? A ASP 113 O ? ? ? 1_555 C CA . CA ? ? A ASP 113 A CA 201 1_555 ? ? ? ? ? ? ? 2.605 ? ? metalc6 metalc ? ? A ASP 113 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 113 A CA 201 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 B MAN . O3 ? ? A CA 201 B MAN 6 1_555 ? ? ? ? ? ? ? 2.482 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 B MAN . O4 ? ? A CA 201 B MAN 6 1_555 ? ? ? ? ? ? ? 2.648 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 93 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 93 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 94 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 94 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 7 ? PHE A 9 ? THR A 7 PHE A 9 AA 2 LEU A 12 ? ALA A 21 ? LEU A 12 ALA A 21 AA 3 ALA A 120 ? ALA A 127 ? ALA A 120 ALA A 127 AA 4 ILE A 36 ? LEU A 37 ? ILE A 36 LEU A 37 AB 1 ALA A 74 ? TRP A 77 ? ALA A 74 TRP A 77 AB 2 TRP A 65 ? VAL A 71 ? TRP A 65 VAL A 71 AB 3 CYS A 103 ? ASN A 107 ? CYS A 103 ASN A 107 AB 4 SER A 110 ? LEU A 114 ? SER A 110 LEU A 114 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 9 ? N PHE A 9 O LEU A 12 ? O LEU A 12 AA 2 3 N ALA A 21 ? N ALA A 21 O ALA A 120 ? O ALA A 120 AA 3 4 N GLN A 125 ? N GLN A 125 O ILE A 36 ? O ILE A 36 AB 1 2 N GLN A 76 ? N GLN A 76 O GLN A 69 ? O GLN A 69 AB 2 3 N LEU A 66 ? N LEU A 66 O LEU A 104 ? O LEU A 104 AB 3 4 N ASN A 107 ? N ASN A 107 O SER A 110 ? O SER A 110 # _database_PDB_matrix.entry_id 2VUZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VUZ _atom_sites.fract_transf_matrix[1][1] 0.031092 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009980 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010445 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 TRP 23 23 23 TRP TRP A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 HIS 51 51 51 HIS HIS A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 TRP 65 65 65 TRP TRP A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 TRP 75 75 75 TRP TRP A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 TRP 77 77 77 TRP TRP A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 TRP 89 89 89 TRP TRP A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 HYP 91 91 91 HYP HYP A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 CYS 116 116 116 CYS CYS A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 GLN 119 119 119 GLN GLN A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 CYS 124 124 124 CYS CYS A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 GLU 129 129 129 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 201 1130 CA CA A . D 4 GOL 1 209 1136 GOL GOL A . E 4 GOL 1 210 1137 GOL GOL A . F 4 GOL 1 211 1138 GOL GOL A . G 5 HOH 1 301 2002 HOH HOH A . G 5 HOH 2 302 2048 HOH HOH A . G 5 HOH 3 303 2090 HOH HOH A . G 5 HOH 4 304 2111 HOH HOH A . G 5 HOH 5 305 2001 HOH HOH A . G 5 HOH 6 306 2087 HOH HOH A . G 5 HOH 7 307 2031 HOH HOH A . G 5 HOH 8 308 2043 HOH HOH A . G 5 HOH 9 309 2106 HOH HOH A . G 5 HOH 10 310 2012 HOH HOH A . G 5 HOH 11 311 2039 HOH HOH A . G 5 HOH 12 312 2050 HOH HOH A . G 5 HOH 13 313 2034 HOH HOH A . G 5 HOH 14 314 2072 HOH HOH A . G 5 HOH 15 315 2045 HOH HOH A . G 5 HOH 16 316 2041 HOH HOH A . G 5 HOH 17 317 2080 HOH HOH A . G 5 HOH 18 318 2061 HOH HOH A . G 5 HOH 19 319 2007 HOH HOH A . G 5 HOH 20 320 2118 HOH HOH A . G 5 HOH 21 321 2046 HOH HOH A . G 5 HOH 22 322 2093 HOH HOH A . G 5 HOH 23 323 2044 HOH HOH A . G 5 HOH 24 324 2036 HOH HOH A . G 5 HOH 25 325 2017 HOH HOH A . G 5 HOH 26 326 2057 HOH HOH A . G 5 HOH 27 327 2092 HOH HOH A . G 5 HOH 28 328 2100 HOH HOH A . G 5 HOH 29 329 2095 HOH HOH A . G 5 HOH 30 330 2088 HOH HOH A . G 5 HOH 31 331 2055 HOH HOH A . G 5 HOH 32 332 2033 HOH HOH A . G 5 HOH 33 333 2049 HOH HOH A . G 5 HOH 34 334 2005 HOH HOH A . G 5 HOH 35 335 2074 HOH HOH A . G 5 HOH 36 336 2091 HOH HOH A . G 5 HOH 37 337 2082 HOH HOH A . G 5 HOH 38 338 2066 HOH HOH A . G 5 HOH 39 339 2081 HOH HOH A . G 5 HOH 40 340 2110 HOH HOH A . G 5 HOH 41 341 2108 HOH HOH A . G 5 HOH 42 342 2010 HOH HOH A . G 5 HOH 43 343 2103 HOH HOH A . G 5 HOH 44 344 2117 HOH HOH A . G 5 HOH 45 345 2115 HOH HOH A . G 5 HOH 46 346 2009 HOH HOH A . G 5 HOH 47 347 2089 HOH HOH A . G 5 HOH 48 348 2060 HOH HOH A . G 5 HOH 49 349 2070 HOH HOH A . G 5 HOH 50 350 2004 HOH HOH A . G 5 HOH 51 351 2076 HOH HOH A . G 5 HOH 52 352 2052 HOH HOH A . G 5 HOH 53 353 2099 HOH HOH A . G 5 HOH 54 354 2014 HOH HOH A . G 5 HOH 55 355 2116 HOH HOH A . G 5 HOH 56 356 2040 HOH HOH A . G 5 HOH 57 357 2019 HOH HOH A . G 5 HOH 58 358 2075 HOH HOH A . G 5 HOH 59 359 2018 HOH HOH A . G 5 HOH 60 360 2113 HOH HOH A . G 5 HOH 61 361 2037 HOH HOH A . G 5 HOH 62 362 2071 HOH HOH A . G 5 HOH 63 363 2038 HOH HOH A . G 5 HOH 64 364 2083 HOH HOH A . G 5 HOH 65 365 2084 HOH HOH A . G 5 HOH 66 366 2104 HOH HOH A . G 5 HOH 67 367 2064 HOH HOH A . G 5 HOH 68 368 2026 HOH HOH A . G 5 HOH 69 369 2067 HOH HOH A . G 5 HOH 70 370 2079 HOH HOH A . G 5 HOH 71 371 2053 HOH HOH A . G 5 HOH 72 372 2027 HOH HOH A . G 5 HOH 73 373 2056 HOH HOH A . G 5 HOH 74 374 2035 HOH HOH A . G 5 HOH 75 375 2058 HOH HOH A . G 5 HOH 76 376 2119 HOH HOH A . G 5 HOH 77 377 2069 HOH HOH A . G 5 HOH 78 378 2112 HOH HOH A . G 5 HOH 79 379 2102 HOH HOH A . G 5 HOH 80 380 2029 HOH HOH A . G 5 HOH 81 381 2023 HOH HOH A . G 5 HOH 82 382 2105 HOH HOH A . G 5 HOH 83 383 2094 HOH HOH A . G 5 HOH 84 384 2051 HOH HOH A . G 5 HOH 85 385 2120 HOH HOH A . G 5 HOH 86 386 2096 HOH HOH A . G 5 HOH 87 387 2063 HOH HOH A . G 5 HOH 88 388 2078 HOH HOH A . G 5 HOH 89 389 2059 HOH HOH A . G 5 HOH 90 390 2015 HOH HOH A . G 5 HOH 91 391 2021 HOH HOH A . G 5 HOH 92 392 2114 HOH HOH A . G 5 HOH 93 393 2016 HOH HOH A . G 5 HOH 94 394 2086 HOH HOH A . G 5 HOH 95 395 2107 HOH HOH A . G 5 HOH 96 396 2068 HOH HOH A . G 5 HOH 97 397 2054 HOH HOH A . G 5 HOH 98 398 2006 HOH HOH A . G 5 HOH 99 399 2011 HOH HOH A . G 5 HOH 100 400 2101 HOH HOH A . G 5 HOH 101 401 2065 HOH HOH A . G 5 HOH 102 402 2024 HOH HOH A . G 5 HOH 103 403 2073 HOH HOH A . G 5 HOH 104 404 2047 HOH HOH A . G 5 HOH 105 405 2001 HOH HOH A . G 5 HOH 106 406 2032 HOH HOH A . G 5 HOH 107 407 2062 HOH HOH A . G 5 HOH 108 408 2013 HOH HOH A . G 5 HOH 109 409 2097 HOH HOH A . G 5 HOH 110 410 2077 HOH HOH A . G 5 HOH 111 411 2042 HOH HOH A . G 5 HOH 112 412 2030 HOH HOH A . G 5 HOH 113 413 2109 HOH HOH A . G 5 HOH 114 414 2085 HOH HOH A . G 5 HOH 115 415 2022 HOH HOH A . G 5 HOH 116 416 2003 HOH HOH A . G 5 HOH 117 417 2098 HOH HOH A . G 5 HOH 118 418 2020 HOH HOH A . G 5 HOH 119 419 2008 HOH HOH A . G 5 HOH 120 420 2025 HOH HOH A . G 5 HOH 121 421 2028 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id HYP _pdbx_struct_mod_residue.label_seq_id 91 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id HYP _pdbx_struct_mod_residue.auth_seq_id 91 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id PRO _pdbx_struct_mod_residue.details 4-HYDROXYPROLINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 349 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 93 ? A GLU 93 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASN 95 ? A ASN 95 ? 1_555 76.1 ? 2 OE1 ? A GLU 93 ? A GLU 93 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OE1 ? A GLU 101 ? A GLU 101 ? 1_555 144.0 ? 3 OD1 ? A ASN 95 ? A ASN 95 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OE1 ? A GLU 101 ? A GLU 101 ? 1_555 71.7 ? 4 OE1 ? A GLU 93 ? A GLU 93 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASN 112 ? A ASN 112 ? 1_555 67.2 ? 5 OD1 ? A ASN 95 ? A ASN 95 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASN 112 ? A ASN 112 ? 1_555 142.5 ? 6 OE1 ? A GLU 101 ? A GLU 101 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASN 112 ? A ASN 112 ? 1_555 145.6 ? 7 OE1 ? A GLU 93 ? A GLU 93 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? A ASP 113 ? A ASP 113 ? 1_555 134.6 ? 8 OD1 ? A ASN 95 ? A ASN 95 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? A ASP 113 ? A ASP 113 ? 1_555 137.9 ? 9 OE1 ? A GLU 101 ? A GLU 101 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? A ASP 113 ? A ASP 113 ? 1_555 68.6 ? 10 OD1 ? A ASN 112 ? A ASN 112 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? A ASP 113 ? A ASP 113 ? 1_555 77.4 ? 11 OE1 ? A GLU 93 ? A GLU 93 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASP 113 ? A ASP 113 ? 1_555 79.0 ? 12 OD1 ? A ASN 95 ? A ASN 95 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASP 113 ? A ASP 113 ? 1_555 91.4 ? 13 OE1 ? A GLU 101 ? A GLU 101 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASP 113 ? A ASP 113 ? 1_555 86.0 ? 14 OD1 ? A ASN 112 ? A ASN 112 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASP 113 ? A ASP 113 ? 1_555 89.0 ? 15 O ? A ASP 113 ? A ASP 113 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 OD1 ? A ASP 113 ? A ASP 113 ? 1_555 72.6 ? 16 OE1 ? A GLU 93 ? A GLU 93 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O3 ? B MAN . ? B MAN 6 ? 1_555 75.7 ? 17 OD1 ? A ASN 95 ? A ASN 95 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O3 ? B MAN . ? B MAN 6 ? 1_555 77.6 ? 18 OE1 ? A GLU 101 ? A GLU 101 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O3 ? B MAN . ? B MAN 6 ? 1_555 111.8 ? 19 OD1 ? A ASN 112 ? A ASN 112 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O3 ? B MAN . ? B MAN 6 ? 1_555 86.0 ? 20 O ? A ASP 113 ? A ASP 113 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O3 ? B MAN . ? B MAN 6 ? 1_555 130.3 ? 21 OD1 ? A ASP 113 ? A ASP 113 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O3 ? B MAN . ? B MAN 6 ? 1_555 154.2 ? 22 OE1 ? A GLU 93 ? A GLU 93 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O4 ? B MAN . ? B MAN 6 ? 1_555 133.2 ? 23 OD1 ? A ASN 95 ? A ASN 95 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O4 ? B MAN . ? B MAN 6 ? 1_555 118.5 ? 24 OE1 ? A GLU 101 ? A GLU 101 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O4 ? B MAN . ? B MAN 6 ? 1_555 77.9 ? 25 OD1 ? A ASN 112 ? A ASN 112 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O4 ? B MAN . ? B MAN 6 ? 1_555 83.7 ? 26 O ? A ASP 113 ? A ASP 113 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O4 ? B MAN . ? B MAN 6 ? 1_555 65.7 ? 27 OD1 ? A ASP 113 ? A ASP 113 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O4 ? B MAN . ? B MAN 6 ? 1_555 138.3 ? 28 O3 ? B MAN . ? B MAN 6 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O4 ? B MAN . ? B MAN 6 ? 1_555 66.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-05 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-07-12 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 2 1 2023-12-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' Other 8 5 'Structure model' 'Structure summary' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Refinement description' 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_struct_conn_angle 2 4 'Structure model' struct_conn 3 5 'Structure model' atom_site 4 5 'Structure model' chem_comp 5 5 'Structure model' entity 6 5 'Structure model' pdbx_branch_scheme 7 5 'Structure model' pdbx_chem_comp_identifier 8 5 'Structure model' pdbx_database_status 9 5 'Structure model' pdbx_entity_branch 10 5 'Structure model' pdbx_entity_branch_descriptor 11 5 'Structure model' pdbx_entity_branch_link 12 5 'Structure model' pdbx_entity_branch_list 13 5 'Structure model' pdbx_entity_nonpoly 14 5 'Structure model' pdbx_nonpoly_scheme 15 5 'Structure model' pdbx_struct_assembly_gen 16 5 'Structure model' pdbx_struct_conn_angle 17 5 'Structure model' pdbx_struct_special_symmetry 18 5 'Structure model' struct_asym 19 5 'Structure model' struct_conn 20 5 'Structure model' struct_site 21 5 'Structure model' struct_site_gen 22 6 'Structure model' chem_comp 23 6 'Structure model' chem_comp_atom 24 6 'Structure model' chem_comp_bond 25 6 'Structure model' database_2 26 6 'Structure model' pdbx_initial_refinement_model 27 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 2 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 16 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_symmetry' 29 5 'Structure model' '_atom_site.B_iso_or_equiv' 30 5 'Structure model' '_atom_site.Cartn_x' 31 5 'Structure model' '_atom_site.Cartn_y' 32 5 'Structure model' '_atom_site.Cartn_z' 33 5 'Structure model' '_atom_site.auth_asym_id' 34 5 'Structure model' '_atom_site.auth_atom_id' 35 5 'Structure model' '_atom_site.auth_comp_id' 36 5 'Structure model' '_atom_site.auth_seq_id' 37 5 'Structure model' '_atom_site.label_asym_id' 38 5 'Structure model' '_atom_site.label_atom_id' 39 5 'Structure model' '_atom_site.label_comp_id' 40 5 'Structure model' '_atom_site.label_entity_id' 41 5 'Structure model' '_atom_site.type_symbol' 42 5 'Structure model' '_chem_comp.name' 43 5 'Structure model' '_chem_comp.type' 44 5 'Structure model' '_pdbx_database_status.status_code_sf' 45 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 46 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 47 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 48 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 49 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 50 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 51 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 52 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 53 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 54 5 'Structure model' '_struct_conn.conn_type_id' 55 5 'Structure model' '_struct_conn.id' 56 5 'Structure model' '_struct_conn.pdbx_dist_value' 57 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 58 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 59 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 60 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 61 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 62 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 63 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 64 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 65 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 66 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 67 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 68 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 69 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 70 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 71 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 72 5 'Structure model' '_struct_conn.ptnr2_symmetry' 73 6 'Structure model' '_chem_comp.pdbx_synonyms' 74 6 'Structure model' '_database_2.pdbx_DOI' 75 6 'Structure model' '_database_2.pdbx_database_accession' 76 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 115 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 115 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 115 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.79 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.49 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 10 ? ? 37.28 -117.11 2 1 ASP A 85 ? ? -111.23 -71.33 3 1 ARG A 88 ? ? -143.05 32.07 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CA CA CA N N 98 CYS N N N N 99 CYS CA C N R 100 CYS C C N N 101 CYS O O N N 102 CYS CB C N N 103 CYS SG S N N 104 CYS OXT O N N 105 CYS H H N N 106 CYS H2 H N N 107 CYS HA H N N 108 CYS HB2 H N N 109 CYS HB3 H N N 110 CYS HG H N N 111 CYS HXT H N N 112 GLN N N N N 113 GLN CA C N S 114 GLN C C N N 115 GLN O O N N 116 GLN CB C N N 117 GLN CG C N N 118 GLN CD C N N 119 GLN OE1 O N N 120 GLN NE2 N N N 121 GLN OXT O N N 122 GLN H H N N 123 GLN H2 H N N 124 GLN HA H N N 125 GLN HB2 H N N 126 GLN HB3 H N N 127 GLN HG2 H N N 128 GLN HG3 H N N 129 GLN HE21 H N N 130 GLN HE22 H N N 131 GLN HXT H N N 132 GLU N N N N 133 GLU CA C N S 134 GLU C C N N 135 GLU O O N N 136 GLU CB C N N 137 GLU CG C N N 138 GLU CD C N N 139 GLU OE1 O N N 140 GLU OE2 O N N 141 GLU OXT O N N 142 GLU H H N N 143 GLU H2 H N N 144 GLU HA H N N 145 GLU HB2 H N N 146 GLU HB3 H N N 147 GLU HG2 H N N 148 GLU HG3 H N N 149 GLU HE2 H N N 150 GLU HXT H N N 151 GLY N N N N 152 GLY CA C N N 153 GLY C C N N 154 GLY O O N N 155 GLY OXT O N N 156 GLY H H N N 157 GLY H2 H N N 158 GLY HA2 H N N 159 GLY HA3 H N N 160 GLY HXT H N N 161 GOL C1 C N N 162 GOL O1 O N N 163 GOL C2 C N N 164 GOL O2 O N N 165 GOL C3 C N N 166 GOL O3 O N N 167 GOL H11 H N N 168 GOL H12 H N N 169 GOL HO1 H N N 170 GOL H2 H N N 171 GOL HO2 H N N 172 GOL H31 H N N 173 GOL H32 H N N 174 GOL HO3 H N N 175 HIS N N N N 176 HIS CA C N S 177 HIS C C N N 178 HIS O O N N 179 HIS CB C N N 180 HIS CG C Y N 181 HIS ND1 N Y N 182 HIS CD2 C Y N 183 HIS CE1 C Y N 184 HIS NE2 N Y N 185 HIS OXT O N N 186 HIS H H N N 187 HIS H2 H N N 188 HIS HA H N N 189 HIS HB2 H N N 190 HIS HB3 H N N 191 HIS HD1 H N N 192 HIS HD2 H N N 193 HIS HE1 H N N 194 HIS HE2 H N N 195 HIS HXT H N N 196 HOH O O N N 197 HOH H1 H N N 198 HOH H2 H N N 199 HYP N N N N 200 HYP CA C N S 201 HYP C C N N 202 HYP O O N N 203 HYP CB C N N 204 HYP CG C N R 205 HYP CD C N N 206 HYP OD1 O N N 207 HYP OXT O N N 208 HYP H H N N 209 HYP HA H N N 210 HYP HB2 H N N 211 HYP HB3 H N N 212 HYP HG H N N 213 HYP HD22 H N N 214 HYP HD23 H N N 215 HYP HD1 H N N 216 HYP HXT H N N 217 ILE N N N N 218 ILE CA C N S 219 ILE C C N N 220 ILE O O N N 221 ILE CB C N S 222 ILE CG1 C N N 223 ILE CG2 C N N 224 ILE CD1 C N N 225 ILE OXT O N N 226 ILE H H N N 227 ILE H2 H N N 228 ILE HA H N N 229 ILE HB H N N 230 ILE HG12 H N N 231 ILE HG13 H N N 232 ILE HG21 H N N 233 ILE HG22 H N N 234 ILE HG23 H N N 235 ILE HD11 H N N 236 ILE HD12 H N N 237 ILE HD13 H N N 238 ILE HXT H N N 239 LEU N N N N 240 LEU CA C N S 241 LEU C C N N 242 LEU O O N N 243 LEU CB C N N 244 LEU CG C N N 245 LEU CD1 C N N 246 LEU CD2 C N N 247 LEU OXT O N N 248 LEU H H N N 249 LEU H2 H N N 250 LEU HA H N N 251 LEU HB2 H N N 252 LEU HB3 H N N 253 LEU HG H N N 254 LEU HD11 H N N 255 LEU HD12 H N N 256 LEU HD13 H N N 257 LEU HD21 H N N 258 LEU HD22 H N N 259 LEU HD23 H N N 260 LEU HXT H N N 261 LYS N N N N 262 LYS CA C N S 263 LYS C C N N 264 LYS O O N N 265 LYS CB C N N 266 LYS CG C N N 267 LYS CD C N N 268 LYS CE C N N 269 LYS NZ N N N 270 LYS OXT O N N 271 LYS H H N N 272 LYS H2 H N N 273 LYS HA H N N 274 LYS HB2 H N N 275 LYS HB3 H N N 276 LYS HG2 H N N 277 LYS HG3 H N N 278 LYS HD2 H N N 279 LYS HD3 H N N 280 LYS HE2 H N N 281 LYS HE3 H N N 282 LYS HZ1 H N N 283 LYS HZ2 H N N 284 LYS HZ3 H N N 285 LYS HXT H N N 286 MAN C1 C N S 287 MAN C2 C N S 288 MAN C3 C N S 289 MAN C4 C N S 290 MAN C5 C N R 291 MAN C6 C N N 292 MAN O1 O N N 293 MAN O2 O N N 294 MAN O3 O N N 295 MAN O4 O N N 296 MAN O5 O N N 297 MAN O6 O N N 298 MAN H1 H N N 299 MAN H2 H N N 300 MAN H3 H N N 301 MAN H4 H N N 302 MAN H5 H N N 303 MAN H61 H N N 304 MAN H62 H N N 305 MAN HO1 H N N 306 MAN HO2 H N N 307 MAN HO3 H N N 308 MAN HO4 H N N 309 MAN HO6 H N N 310 MET N N N N 311 MET CA C N S 312 MET C C N N 313 MET O O N N 314 MET CB C N N 315 MET CG C N N 316 MET SD S N N 317 MET CE C N N 318 MET OXT O N N 319 MET H H N N 320 MET H2 H N N 321 MET HA H N N 322 MET HB2 H N N 323 MET HB3 H N N 324 MET HG2 H N N 325 MET HG3 H N N 326 MET HE1 H N N 327 MET HE2 H N N 328 MET HE3 H N N 329 MET HXT H N N 330 NAG C1 C N R 331 NAG C2 C N R 332 NAG C3 C N R 333 NAG C4 C N S 334 NAG C5 C N R 335 NAG C6 C N N 336 NAG C7 C N N 337 NAG C8 C N N 338 NAG N2 N N N 339 NAG O1 O N N 340 NAG O3 O N N 341 NAG O4 O N N 342 NAG O5 O N N 343 NAG O6 O N N 344 NAG O7 O N N 345 NAG H1 H N N 346 NAG H2 H N N 347 NAG H3 H N N 348 NAG H4 H N N 349 NAG H5 H N N 350 NAG H61 H N N 351 NAG H62 H N N 352 NAG H81 H N N 353 NAG H82 H N N 354 NAG H83 H N N 355 NAG HN2 H N N 356 NAG HO1 H N N 357 NAG HO3 H N N 358 NAG HO4 H N N 359 NAG HO6 H N N 360 PHE N N N N 361 PHE CA C N S 362 PHE C C N N 363 PHE O O N N 364 PHE CB C N N 365 PHE CG C Y N 366 PHE CD1 C Y N 367 PHE CD2 C Y N 368 PHE CE1 C Y N 369 PHE CE2 C Y N 370 PHE CZ C Y N 371 PHE OXT O N N 372 PHE H H N N 373 PHE H2 H N N 374 PHE HA H N N 375 PHE HB2 H N N 376 PHE HB3 H N N 377 PHE HD1 H N N 378 PHE HD2 H N N 379 PHE HE1 H N N 380 PHE HE2 H N N 381 PHE HZ H N N 382 PHE HXT H N N 383 PRO N N N N 384 PRO CA C N S 385 PRO C C N N 386 PRO O O N N 387 PRO CB C N N 388 PRO CG C N N 389 PRO CD C N N 390 PRO OXT O N N 391 PRO H H N N 392 PRO HA H N N 393 PRO HB2 H N N 394 PRO HB3 H N N 395 PRO HG2 H N N 396 PRO HG3 H N N 397 PRO HD2 H N N 398 PRO HD3 H N N 399 PRO HXT H N N 400 SER N N N N 401 SER CA C N S 402 SER C C N N 403 SER O O N N 404 SER CB C N N 405 SER OG O N N 406 SER OXT O N N 407 SER H H N N 408 SER H2 H N N 409 SER HA H N N 410 SER HB2 H N N 411 SER HB3 H N N 412 SER HG H N N 413 SER HXT H N N 414 THR N N N N 415 THR CA C N S 416 THR C C N N 417 THR O O N N 418 THR CB C N R 419 THR OG1 O N N 420 THR CG2 C N N 421 THR OXT O N N 422 THR H H N N 423 THR H2 H N N 424 THR HA H N N 425 THR HB H N N 426 THR HG1 H N N 427 THR HG21 H N N 428 THR HG22 H N N 429 THR HG23 H N N 430 THR HXT H N N 431 TRP N N N N 432 TRP CA C N S 433 TRP C C N N 434 TRP O O N N 435 TRP CB C N N 436 TRP CG C Y N 437 TRP CD1 C Y N 438 TRP CD2 C Y N 439 TRP NE1 N Y N 440 TRP CE2 C Y N 441 TRP CE3 C Y N 442 TRP CZ2 C Y N 443 TRP CZ3 C Y N 444 TRP CH2 C Y N 445 TRP OXT O N N 446 TRP H H N N 447 TRP H2 H N N 448 TRP HA H N N 449 TRP HB2 H N N 450 TRP HB3 H N N 451 TRP HD1 H N N 452 TRP HE1 H N N 453 TRP HE3 H N N 454 TRP HZ2 H N N 455 TRP HZ3 H N N 456 TRP HH2 H N N 457 TRP HXT H N N 458 TYR N N N N 459 TYR CA C N S 460 TYR C C N N 461 TYR O O N N 462 TYR CB C N N 463 TYR CG C Y N 464 TYR CD1 C Y N 465 TYR CD2 C Y N 466 TYR CE1 C Y N 467 TYR CE2 C Y N 468 TYR CZ C Y N 469 TYR OH O N N 470 TYR OXT O N N 471 TYR H H N N 472 TYR H2 H N N 473 TYR HA H N N 474 TYR HB2 H N N 475 TYR HB3 H N N 476 TYR HD1 H N N 477 TYR HD2 H N N 478 TYR HE1 H N N 479 TYR HE2 H N N 480 TYR HH H N N 481 TYR HXT H N N 482 VAL N N N N 483 VAL CA C N S 484 VAL C C N N 485 VAL O O N N 486 VAL CB C N N 487 VAL CG1 C N N 488 VAL CG2 C N N 489 VAL OXT O N N 490 VAL H H N N 491 VAL H2 H N N 492 VAL HA H N N 493 VAL HB H N N 494 VAL HG11 H N N 495 VAL HG12 H N N 496 VAL HG13 H N N 497 VAL HG21 H N N 498 VAL HG22 H N N 499 VAL HG23 H N N 500 VAL HXT H N N 501 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 GOL C1 O1 sing N N 153 GOL C1 C2 sing N N 154 GOL C1 H11 sing N N 155 GOL C1 H12 sing N N 156 GOL O1 HO1 sing N N 157 GOL C2 O2 sing N N 158 GOL C2 C3 sing N N 159 GOL C2 H2 sing N N 160 GOL O2 HO2 sing N N 161 GOL C3 O3 sing N N 162 GOL C3 H31 sing N N 163 GOL C3 H32 sing N N 164 GOL O3 HO3 sing N N 165 HIS N CA sing N N 166 HIS N H sing N N 167 HIS N H2 sing N N 168 HIS CA C sing N N 169 HIS CA CB sing N N 170 HIS CA HA sing N N 171 HIS C O doub N N 172 HIS C OXT sing N N 173 HIS CB CG sing N N 174 HIS CB HB2 sing N N 175 HIS CB HB3 sing N N 176 HIS CG ND1 sing Y N 177 HIS CG CD2 doub Y N 178 HIS ND1 CE1 doub Y N 179 HIS ND1 HD1 sing N N 180 HIS CD2 NE2 sing Y N 181 HIS CD2 HD2 sing N N 182 HIS CE1 NE2 sing Y N 183 HIS CE1 HE1 sing N N 184 HIS NE2 HE2 sing N N 185 HIS OXT HXT sing N N 186 HOH O H1 sing N N 187 HOH O H2 sing N N 188 HYP N CA sing N N 189 HYP N CD sing N N 190 HYP N H sing N N 191 HYP CA C sing N N 192 HYP CA CB sing N N 193 HYP CA HA sing N N 194 HYP C O doub N N 195 HYP C OXT sing N N 196 HYP CB CG sing N N 197 HYP CB HB2 sing N N 198 HYP CB HB3 sing N N 199 HYP CG CD sing N N 200 HYP CG OD1 sing N N 201 HYP CG HG sing N N 202 HYP CD HD22 sing N N 203 HYP CD HD23 sing N N 204 HYP OD1 HD1 sing N N 205 HYP OXT HXT sing N N 206 ILE N CA sing N N 207 ILE N H sing N N 208 ILE N H2 sing N N 209 ILE CA C sing N N 210 ILE CA CB sing N N 211 ILE CA HA sing N N 212 ILE C O doub N N 213 ILE C OXT sing N N 214 ILE CB CG1 sing N N 215 ILE CB CG2 sing N N 216 ILE CB HB sing N N 217 ILE CG1 CD1 sing N N 218 ILE CG1 HG12 sing N N 219 ILE CG1 HG13 sing N N 220 ILE CG2 HG21 sing N N 221 ILE CG2 HG22 sing N N 222 ILE CG2 HG23 sing N N 223 ILE CD1 HD11 sing N N 224 ILE CD1 HD12 sing N N 225 ILE CD1 HD13 sing N N 226 ILE OXT HXT sing N N 227 LEU N CA sing N N 228 LEU N H sing N N 229 LEU N H2 sing N N 230 LEU CA C sing N N 231 LEU CA CB sing N N 232 LEU CA HA sing N N 233 LEU C O doub N N 234 LEU C OXT sing N N 235 LEU CB CG sing N N 236 LEU CB HB2 sing N N 237 LEU CB HB3 sing N N 238 LEU CG CD1 sing N N 239 LEU CG CD2 sing N N 240 LEU CG HG sing N N 241 LEU CD1 HD11 sing N N 242 LEU CD1 HD12 sing N N 243 LEU CD1 HD13 sing N N 244 LEU CD2 HD21 sing N N 245 LEU CD2 HD22 sing N N 246 LEU CD2 HD23 sing N N 247 LEU OXT HXT sing N N 248 LYS N CA sing N N 249 LYS N H sing N N 250 LYS N H2 sing N N 251 LYS CA C sing N N 252 LYS CA CB sing N N 253 LYS CA HA sing N N 254 LYS C O doub N N 255 LYS C OXT sing N N 256 LYS CB CG sing N N 257 LYS CB HB2 sing N N 258 LYS CB HB3 sing N N 259 LYS CG CD sing N N 260 LYS CG HG2 sing N N 261 LYS CG HG3 sing N N 262 LYS CD CE sing N N 263 LYS CD HD2 sing N N 264 LYS CD HD3 sing N N 265 LYS CE NZ sing N N 266 LYS CE HE2 sing N N 267 LYS CE HE3 sing N N 268 LYS NZ HZ1 sing N N 269 LYS NZ HZ2 sing N N 270 LYS NZ HZ3 sing N N 271 LYS OXT HXT sing N N 272 MAN C1 C2 sing N N 273 MAN C1 O1 sing N N 274 MAN C1 O5 sing N N 275 MAN C1 H1 sing N N 276 MAN C2 C3 sing N N 277 MAN C2 O2 sing N N 278 MAN C2 H2 sing N N 279 MAN C3 C4 sing N N 280 MAN C3 O3 sing N N 281 MAN C3 H3 sing N N 282 MAN C4 C5 sing N N 283 MAN C4 O4 sing N N 284 MAN C4 H4 sing N N 285 MAN C5 C6 sing N N 286 MAN C5 O5 sing N N 287 MAN C5 H5 sing N N 288 MAN C6 O6 sing N N 289 MAN C6 H61 sing N N 290 MAN C6 H62 sing N N 291 MAN O1 HO1 sing N N 292 MAN O2 HO2 sing N N 293 MAN O3 HO3 sing N N 294 MAN O4 HO4 sing N N 295 MAN O6 HO6 sing N N 296 MET N CA sing N N 297 MET N H sing N N 298 MET N H2 sing N N 299 MET CA C sing N N 300 MET CA CB sing N N 301 MET CA HA sing N N 302 MET C O doub N N 303 MET C OXT sing N N 304 MET CB CG sing N N 305 MET CB HB2 sing N N 306 MET CB HB3 sing N N 307 MET CG SD sing N N 308 MET CG HG2 sing N N 309 MET CG HG3 sing N N 310 MET SD CE sing N N 311 MET CE HE1 sing N N 312 MET CE HE2 sing N N 313 MET CE HE3 sing N N 314 MET OXT HXT sing N N 315 NAG C1 C2 sing N N 316 NAG C1 O1 sing N N 317 NAG C1 O5 sing N N 318 NAG C1 H1 sing N N 319 NAG C2 C3 sing N N 320 NAG C2 N2 sing N N 321 NAG C2 H2 sing N N 322 NAG C3 C4 sing N N 323 NAG C3 O3 sing N N 324 NAG C3 H3 sing N N 325 NAG C4 C5 sing N N 326 NAG C4 O4 sing N N 327 NAG C4 H4 sing N N 328 NAG C5 C6 sing N N 329 NAG C5 O5 sing N N 330 NAG C5 H5 sing N N 331 NAG C6 O6 sing N N 332 NAG C6 H61 sing N N 333 NAG C6 H62 sing N N 334 NAG C7 C8 sing N N 335 NAG C7 N2 sing N N 336 NAG C7 O7 doub N N 337 NAG C8 H81 sing N N 338 NAG C8 H82 sing N N 339 NAG C8 H83 sing N N 340 NAG N2 HN2 sing N N 341 NAG O1 HO1 sing N N 342 NAG O3 HO3 sing N N 343 NAG O4 HO4 sing N N 344 NAG O6 HO6 sing N N 345 PHE N CA sing N N 346 PHE N H sing N N 347 PHE N H2 sing N N 348 PHE CA C sing N N 349 PHE CA CB sing N N 350 PHE CA HA sing N N 351 PHE C O doub N N 352 PHE C OXT sing N N 353 PHE CB CG sing N N 354 PHE CB HB2 sing N N 355 PHE CB HB3 sing N N 356 PHE CG CD1 doub Y N 357 PHE CG CD2 sing Y N 358 PHE CD1 CE1 sing Y N 359 PHE CD1 HD1 sing N N 360 PHE CD2 CE2 doub Y N 361 PHE CD2 HD2 sing N N 362 PHE CE1 CZ doub Y N 363 PHE CE1 HE1 sing N N 364 PHE CE2 CZ sing Y N 365 PHE CE2 HE2 sing N N 366 PHE CZ HZ sing N N 367 PHE OXT HXT sing N N 368 PRO N CA sing N N 369 PRO N CD sing N N 370 PRO N H sing N N 371 PRO CA C sing N N 372 PRO CA CB sing N N 373 PRO CA HA sing N N 374 PRO C O doub N N 375 PRO C OXT sing N N 376 PRO CB CG sing N N 377 PRO CB HB2 sing N N 378 PRO CB HB3 sing N N 379 PRO CG CD sing N N 380 PRO CG HG2 sing N N 381 PRO CG HG3 sing N N 382 PRO CD HD2 sing N N 383 PRO CD HD3 sing N N 384 PRO OXT HXT sing N N 385 SER N CA sing N N 386 SER N H sing N N 387 SER N H2 sing N N 388 SER CA C sing N N 389 SER CA CB sing N N 390 SER CA HA sing N N 391 SER C O doub N N 392 SER C OXT sing N N 393 SER CB OG sing N N 394 SER CB HB2 sing N N 395 SER CB HB3 sing N N 396 SER OG HG sing N N 397 SER OXT HXT sing N N 398 THR N CA sing N N 399 THR N H sing N N 400 THR N H2 sing N N 401 THR CA C sing N N 402 THR CA CB sing N N 403 THR CA HA sing N N 404 THR C O doub N N 405 THR C OXT sing N N 406 THR CB OG1 sing N N 407 THR CB CG2 sing N N 408 THR CB HB sing N N 409 THR OG1 HG1 sing N N 410 THR CG2 HG21 sing N N 411 THR CG2 HG22 sing N N 412 THR CG2 HG23 sing N N 413 THR OXT HXT sing N N 414 TRP N CA sing N N 415 TRP N H sing N N 416 TRP N H2 sing N N 417 TRP CA C sing N N 418 TRP CA CB sing N N 419 TRP CA HA sing N N 420 TRP C O doub N N 421 TRP C OXT sing N N 422 TRP CB CG sing N N 423 TRP CB HB2 sing N N 424 TRP CB HB3 sing N N 425 TRP CG CD1 doub Y N 426 TRP CG CD2 sing Y N 427 TRP CD1 NE1 sing Y N 428 TRP CD1 HD1 sing N N 429 TRP CD2 CE2 doub Y N 430 TRP CD2 CE3 sing Y N 431 TRP NE1 CE2 sing Y N 432 TRP NE1 HE1 sing N N 433 TRP CE2 CZ2 sing Y N 434 TRP CE3 CZ3 doub Y N 435 TRP CE3 HE3 sing N N 436 TRP CZ2 CH2 doub Y N 437 TRP CZ2 HZ2 sing N N 438 TRP CZ3 CH2 sing Y N 439 TRP CZ3 HZ3 sing N N 440 TRP CH2 HH2 sing N N 441 TRP OXT HXT sing N N 442 TYR N CA sing N N 443 TYR N H sing N N 444 TYR N H2 sing N N 445 TYR CA C sing N N 446 TYR CA CB sing N N 447 TYR CA HA sing N N 448 TYR C O doub N N 449 TYR C OXT sing N N 450 TYR CB CG sing N N 451 TYR CB HB2 sing N N 452 TYR CB HB3 sing N N 453 TYR CG CD1 doub Y N 454 TYR CG CD2 sing Y N 455 TYR CD1 CE1 sing Y N 456 TYR CD1 HD1 sing N N 457 TYR CD2 CE2 doub Y N 458 TYR CD2 HD2 sing N N 459 TYR CE1 CZ doub Y N 460 TYR CE1 HE1 sing N N 461 TYR CE2 CZ sing Y N 462 TYR CE2 HE2 sing N N 463 TYR CZ OH sing N N 464 TYR OH HH sing N N 465 TYR OXT HXT sing N N 466 VAL N CA sing N N 467 VAL N H sing N N 468 VAL N H2 sing N N 469 VAL CA C sing N N 470 VAL CA CB sing N N 471 VAL CA HA sing N N 472 VAL C O doub N N 473 VAL C OXT sing N N 474 VAL CB CG1 sing N N 475 VAL CB CG2 sing N N 476 VAL CB HB sing N N 477 VAL CG1 HG11 sing N N 478 VAL CG1 HG12 sing N N 479 VAL CG1 HG13 sing N N 480 VAL CG2 HG21 sing N N 481 VAL CG2 HG22 sing N N 482 VAL CG2 HG23 sing N N 483 VAL OXT HXT sing N N 484 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 1139 n B 2 NAG 2 B NAG 2 A NAG 1140 n B 2 BMA 3 B BMA 3 A BMA 1131 n B 2 MAN 4 B MAN 4 A MAN 1132 n B 2 NAG 5 B NAG 5 A NAG 1133 n B 2 MAN 6 B MAN 6 A MAN 1134 n B 2 NAG 7 B NAG 7 A NAG 1135 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-3-1/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1' WURCS PDB2Glycan 1.1.0 3 2 ;[][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 NAG C1 O1 4 MAN O2 HO2 sing ? 5 2 6 MAN C1 O1 3 BMA O6 HO6 sing ? 6 2 7 NAG C1 O1 6 MAN O2 HO2 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 NAG 5 n 2 MAN 6 n 2 NAG 7 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2VUV _pdbx_initial_refinement_model.details 'PDB ENTRY 2VUV' #