HEADER ISOMERASE 11-JUN-08 2VVR TITLE CRYSTAL STRUCTURE OF THE H99N MUTANT OF RIBOSE-5-PHOSPHATE ISOMERASE B TITLE 2 FROM E. COLI SOAKED WITH RIBOSE 5-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE B; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: PHOSPHORIBOISOMERASE B; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD/TOPO KEYWDS RPIB, ISOMERASE, CARBOHYDRATE METABOLISM, PENTOSE PHOSPHATE PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR A.K.ROOS,S.L.MOWBRAY REVDAT 4 13-DEC-23 2VVR 1 REMARK REVDAT 3 24-FEB-09 2VVR 1 VERSN REVDAT 2 09-SEP-08 2VVR 1 JRNL REVDAT 1 08-JUL-08 2VVR 0 JRNL AUTH A.K.ROOS,S.MARIANO,E.KOWALINSKI,L.SALMON,S.L.MOWBRAY JRNL TITL D-RIBOSE-5-PHOSPHATE ISOMERASE B FROM ESCHERICHIA COLI IS JRNL TITL 2 ALSO A FUNCTIONAL D-ALLOSE-6-PHOSPHATE ISOMERASE, WHILE THE JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS ENZYME IS NOT. JRNL REF J.MOL.BIOL. V. 382 667 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18640127 JRNL DOI 10.1016/J.JMB.2008.06.090 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3564 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.579 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6729 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4437 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9096 ; 1.175 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10800 ; 0.950 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 873 ; 5.589 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;31.444 ;23.939 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1113 ;12.654 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;19.164 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1029 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7656 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1377 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1338 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4700 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3270 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3098 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 303 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5564 ; 0.870 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1842 ; 0.128 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6840 ; 0.999 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2811 ; 1.786 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2256 ; 2.571 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2VVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1290036521. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50635 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NN4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M MES PH6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.85050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.93100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.85050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.93100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 99 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, HIS 99 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN C, HIS 99 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN D, HIS 99 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN E, HIS 99 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN F, HIS 99 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 148 REMARK 465 ASN A 149 REMARK 465 ARG B 147 REMARK 465 ARG B 148 REMARK 465 ASN B 149 REMARK 465 ARG C 148 REMARK 465 ASN C 149 REMARK 465 ARG D 147 REMARK 465 ARG D 148 REMARK 465 ASN D 149 REMARK 465 ARG E 148 REMARK 465 ASN E 149 REMARK 465 ARG F 147 REMARK 465 ARG F 148 REMARK 465 ASN F 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 146 38.64 -96.30 REMARK 500 GLN C 146 55.56 127.14 REMARK 500 GLN E 146 47.61 80.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NN4 RELATED DB: PDB REMARK 900 STRUCTURAL GENOMICS, RPIB/ALSB REMARK 900 RELATED ID: 2VVQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE REMARK 900 ISOMERASE B IN COMPLEX WITH THE INHIBITOR 5-DEOXY-5-PHOSPHO-D- REMARK 900 RIBONATE REMARK 900 RELATED ID: 2VVP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE REMARK 900 ISOMERASE B IN COMPLEX WITH ITS SUBSTRATES RIBOSE 5-PHOSPHATE AND REMARK 900 RIBULOSE 5-PHOSPHATE REMARK 900 RELATED ID: 2VVO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE REMARK 900 ISOMERASE B IN COMPLEX WITH ALPHA ALLOSE 6-PHOSPHATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 H99N MUTANT DBREF 2VVR A 1 149 UNP P37351 RPIB_ECOLI 1 149 DBREF 2VVR B 1 149 UNP P37351 RPIB_ECOLI 1 149 DBREF 2VVR C 1 149 UNP P37351 RPIB_ECOLI 1 149 DBREF 2VVR D 1 149 UNP P37351 RPIB_ECOLI 1 149 DBREF 2VVR E 1 149 UNP P37351 RPIB_ECOLI 1 149 DBREF 2VVR F 1 149 UNP P37351 RPIB_ECOLI 1 149 SEQADV 2VVR ASN A 99 UNP P37351 HIS 99 ENGINEERED MUTATION SEQADV 2VVR ASN B 99 UNP P37351 HIS 99 ENGINEERED MUTATION SEQADV 2VVR ASN C 99 UNP P37351 HIS 99 ENGINEERED MUTATION SEQADV 2VVR ASN D 99 UNP P37351 HIS 99 ENGINEERED MUTATION SEQADV 2VVR ASN E 99 UNP P37351 HIS 99 ENGINEERED MUTATION SEQADV 2VVR ASN F 99 UNP P37351 HIS 99 ENGINEERED MUTATION SEQRES 1 A 149 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 2 A 149 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 3 A 149 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 4 A 149 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 5 A 149 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 6 A 149 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 7 A 149 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 8 A 149 SER ALA GLN LEU SER ARG GLN ASN ASN ASP THR ASN VAL SEQRES 9 A 149 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 10 A 149 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 11 A 149 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 12 A 149 ILE GLU GLN ARG ARG ASN SEQRES 1 B 149 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 2 B 149 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 3 B 149 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 4 B 149 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 5 B 149 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 6 B 149 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 7 B 149 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 8 B 149 SER ALA GLN LEU SER ARG GLN ASN ASN ASP THR ASN VAL SEQRES 9 B 149 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 10 B 149 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 11 B 149 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 12 B 149 ILE GLU GLN ARG ARG ASN SEQRES 1 C 149 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 2 C 149 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 3 C 149 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 4 C 149 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 5 C 149 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 6 C 149 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 7 C 149 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 8 C 149 SER ALA GLN LEU SER ARG GLN ASN ASN ASP THR ASN VAL SEQRES 9 C 149 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 10 C 149 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 11 C 149 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 12 C 149 ILE GLU GLN ARG ARG ASN SEQRES 1 D 149 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 2 D 149 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 3 D 149 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 4 D 149 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 5 D 149 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 6 D 149 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 7 D 149 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 8 D 149 SER ALA GLN LEU SER ARG GLN ASN ASN ASP THR ASN VAL SEQRES 9 D 149 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 10 D 149 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 11 D 149 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 12 D 149 ILE GLU GLN ARG ARG ASN SEQRES 1 E 149 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 2 E 149 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 3 E 149 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 4 E 149 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 5 E 149 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 6 E 149 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 7 E 149 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 8 E 149 SER ALA GLN LEU SER ARG GLN ASN ASN ASP THR ASN VAL SEQRES 9 E 149 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 10 E 149 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 11 E 149 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 12 E 149 ILE GLU GLN ARG ARG ASN SEQRES 1 F 149 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 2 F 149 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 3 F 149 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 4 F 149 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 5 F 149 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 6 F 149 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 7 F 149 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 8 F 149 SER ALA GLN LEU SER ARG GLN ASN ASN ASP THR ASN VAL SEQRES 9 F 149 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 10 F 149 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 11 F 149 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 12 F 149 ILE GLU GLN ARG ARG ASN FORMUL 7 HOH *343(H2 O) HELIX 1 1 VAL A 11 ILE A 14 5 4 HELIX 2 2 LEU A 15 ARG A 26 1 12 HELIX 3 3 ASP A 42 GLY A 56 1 15 HELIX 4 4 GLY A 69 LYS A 78 1 10 HELIX 5 5 GLU A 89 ASP A 101 1 13 HELIX 6 6 GLY A 113 ALA A 127 1 15 HELIX 7 7 ARG A 133 GLN A 146 1 14 HELIX 8 8 VAL B 11 ILE B 14 5 4 HELIX 9 9 LEU B 15 ARG B 26 1 12 HELIX 10 10 ASP B 42 GLY B 56 1 15 HELIX 11 11 GLY B 69 LYS B 78 1 10 HELIX 12 12 GLU B 89 ASP B 101 1 13 HELIX 13 13 GLY B 113 ALA B 127 1 15 HELIX 14 14 GLY B 132 GLN B 146 1 15 HELIX 15 15 VAL C 11 ILE C 14 5 4 HELIX 16 16 LEU C 15 ARG C 26 1 12 HELIX 17 17 ASP C 42 GLY C 56 1 15 HELIX 18 18 GLY C 69 LYS C 78 1 10 HELIX 19 19 GLU C 89 ASP C 101 1 13 HELIX 20 20 GLY C 113 ALA C 127 1 15 HELIX 21 21 ARG C 133 GLN C 146 1 14 HELIX 22 22 VAL D 11 ILE D 14 5 4 HELIX 23 23 LEU D 15 ARG D 26 1 12 HELIX 24 24 ASP D 42 GLY D 56 1 15 HELIX 25 25 GLY D 69 LYS D 78 1 10 HELIX 26 26 GLU D 89 ASP D 101 1 13 HELIX 27 27 GLY D 113 ALA D 127 1 15 HELIX 28 28 ARG D 133 GLN D 146 1 14 HELIX 29 29 VAL E 11 ILE E 14 5 4 HELIX 30 30 LEU E 15 ARG E 26 1 12 HELIX 31 31 ASP E 42 GLY E 56 1 15 HELIX 32 32 GLY E 69 LYS E 78 1 10 HELIX 33 33 GLU E 89 ASP E 101 1 13 HELIX 34 34 GLY E 113 ALA E 127 1 15 HELIX 35 35 ARG E 133 GLU E 145 1 13 HELIX 36 36 VAL F 11 ILE F 14 5 4 HELIX 37 37 LEU F 15 ARG F 26 1 12 HELIX 38 38 ASP F 42 GLY F 56 1 15 HELIX 39 39 GLY F 69 LYS F 78 1 10 HELIX 40 40 GLU F 89 ASP F 101 1 13 HELIX 41 41 GLY F 113 ALA F 127 1 15 HELIX 42 42 ARG F 133 GLN F 146 1 14 SHEET 1 AA 5 GLU A 29 ASP A 32 0 SHEET 2 AA 5 LYS A 3 CYS A 8 1 O ILE A 4 N ILE A 31 SHEET 3 AA 5 GLY A 61 CYS A 66 1 O GLY A 61 N ALA A 5 SHEET 4 AA 5 VAL A 104 GLY A 108 1 O LEU A 105 N LEU A 64 SHEET 5 AA 5 ALA A 84 VAL A 86 1 O VAL A 85 N ALA A 106 SHEET 1 BA 5 GLU B 29 ASP B 32 0 SHEET 2 BA 5 LYS B 3 CYS B 8 1 O ILE B 4 N ILE B 31 SHEET 3 BA 5 GLY B 61 CYS B 66 1 O GLY B 61 N ALA B 5 SHEET 4 BA 5 VAL B 104 GLY B 108 1 O LEU B 105 N LEU B 64 SHEET 5 BA 5 ALA B 84 VAL B 86 1 O VAL B 85 N ALA B 106 SHEET 1 CA 5 GLU C 29 ASP C 32 0 SHEET 2 CA 5 LYS C 3 CYS C 8 1 O ILE C 4 N ILE C 31 SHEET 3 CA 5 GLY C 61 CYS C 66 1 O GLY C 61 N ALA C 5 SHEET 4 CA 5 VAL C 104 GLY C 108 1 O LEU C 105 N LEU C 64 SHEET 5 CA 5 ALA C 84 VAL C 86 1 O VAL C 85 N ALA C 106 SHEET 1 DA 5 GLU D 29 ASP D 32 0 SHEET 2 DA 5 LYS D 3 CYS D 8 1 O ILE D 4 N ILE D 31 SHEET 3 DA 5 GLY D 61 CYS D 66 1 O GLY D 61 N ALA D 5 SHEET 4 DA 5 VAL D 104 GLY D 108 1 O LEU D 105 N LEU D 64 SHEET 5 DA 5 ALA D 84 VAL D 86 1 O VAL D 85 N ALA D 106 SHEET 1 EA 5 GLU E 29 ASP E 32 0 SHEET 2 EA 5 LYS E 3 CYS E 8 1 O ILE E 4 N ILE E 31 SHEET 3 EA 5 GLY E 61 CYS E 66 1 O GLY E 61 N ALA E 5 SHEET 4 EA 5 VAL E 104 GLY E 108 1 O LEU E 105 N LEU E 64 SHEET 5 EA 5 ALA E 84 VAL E 86 1 O VAL E 85 N ALA E 106 SHEET 1 FA 5 GLU F 29 ASP F 32 0 SHEET 2 FA 5 LYS F 3 CYS F 8 1 O ILE F 4 N ILE F 31 SHEET 3 FA 5 GLY F 61 CYS F 66 1 O GLY F 61 N ALA F 5 SHEET 4 FA 5 VAL F 104 GLY F 108 1 O LEU F 105 N LEU F 64 SHEET 5 FA 5 ALA F 84 VAL F 86 1 O VAL F 85 N ALA F 106 CISPEP 1 GLY A 34 THR A 35 0 4.86 CISPEP 2 GLY B 34 THR B 35 0 2.48 CISPEP 3 GLY C 34 THR C 35 0 2.90 CISPEP 4 GLY D 34 THR D 35 0 3.87 CISPEP 5 GLY E 34 THR E 35 0 1.82 CISPEP 6 GLY F 34 THR F 35 0 5.85 CRYST1 89.701 51.862 207.209 90.00 115.55 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011148 0.000000 0.005329 0.00000 SCALE2 0.000000 0.019282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005349 0.00000