HEADER HYDROLASE 13-JUN-08 2VVZ TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF STREPTOCOCCUS PNEUMONIAE TITLE 2 SIALIDASE NANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIALIDASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 319-822; COMPND 5 SYNONYM: NANA SIALIDASE, NEURAMINIDASE A; COMPND 6 EC: 3.2.1.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: R36A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SECRETED, CELL WALL, SIALIDASE, HYDROLASE, PEPTIDOGLYCAN-ANCHOR, KEYWDS 2 GLYCOSIDASE, NEURAMINIDASE, VIRULENCE FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR G.XU,X.LI,P.W.ANDREW,G.L.TAYLOR REVDAT 7 13-DEC-23 2VVZ 1 REMARK REVDAT 6 02-SEP-20 2VVZ 1 REMARK HETSYN REVDAT 5 29-JUL-20 2VVZ 1 REMARK SITE REVDAT 4 05-JUL-17 2VVZ 1 REMARK REVDAT 3 24-FEB-09 2VVZ 1 VERSN REVDAT 2 16-SEP-08 2VVZ 1 JRNL REVDAT 1 24-JUN-08 2VVZ 0 JRNL AUTH G.XU,X.LI,P.W.ANDREW,G.L.TAYLOR JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF STREPTOCOCCUS JRNL TITL 2 PNEUMONIAE SIALIDASE NANA. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 64 772 2008 JRNL REFN ESSN 1744-3091 JRNL PMID 18765901 JRNL DOI 10.1107/S1744309108024044 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 34868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1830 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.4590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7442 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.818 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.358 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.257 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.482 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.852 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7644 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10326 ; 1.145 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 938 ; 7.367 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 366 ;34.184 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1344 ;14.443 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;14.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1092 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5842 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3453 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5031 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 385 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4788 ; 0.358 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7482 ; 0.633 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3292 ; 0.642 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2844 ; 1.063 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1290036556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36773 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BF6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1M MES PH 6.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.60300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.29800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.81300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 113.29800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.60300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.81300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 319 REMARK 465 GLY A 320 REMARK 465 ALA A 321 REMARK 465 ASP A 792 REMARK 465 LEU A 793 REMARK 465 ILE A 794 REMARK 465 SER A 795 REMARK 465 PRO A 796 REMARK 465 THR A 797 REMARK 465 GLU A 798 REMARK 465 ALA A 799 REMARK 465 LYS A 800 REMARK 465 VAL A 801 REMARK 465 LYS A 802 REMARK 465 ARG A 803 REMARK 465 THR A 804 REMARK 465 ARG A 805 REMARK 465 GLU A 806 REMARK 465 MET A 807 REMARK 465 GLY A 808 REMARK 465 LYS A 809 REMARK 465 GLY A 810 REMARK 465 VAL A 811 REMARK 465 ILE A 812 REMARK 465 GLY A 813 REMARK 465 LEU A 814 REMARK 465 GLU A 815 REMARK 465 PHE A 816 REMARK 465 ASP A 817 REMARK 465 SER A 818 REMARK 465 GLU A 819 REMARK 465 VAL A 820 REMARK 465 LEU A 821 REMARK 465 VAL A 822 REMARK 465 GLU B 319 REMARK 465 GLY B 320 REMARK 465 ALA B 321 REMARK 465 ASP B 792 REMARK 465 LEU B 793 REMARK 465 ILE B 794 REMARK 465 SER B 795 REMARK 465 PRO B 796 REMARK 465 THR B 797 REMARK 465 GLU B 798 REMARK 465 ALA B 799 REMARK 465 LYS B 800 REMARK 465 VAL B 801 REMARK 465 LYS B 802 REMARK 465 ARG B 803 REMARK 465 THR B 804 REMARK 465 ARG B 805 REMARK 465 GLU B 806 REMARK 465 MET B 807 REMARK 465 GLY B 808 REMARK 465 LYS B 809 REMARK 465 GLY B 810 REMARK 465 VAL B 811 REMARK 465 ILE B 812 REMARK 465 GLY B 813 REMARK 465 LEU B 814 REMARK 465 GLU B 815 REMARK 465 PHE B 816 REMARK 465 ASP B 817 REMARK 465 SER B 818 REMARK 465 GLU B 819 REMARK 465 VAL B 820 REMARK 465 LEU B 821 REMARK 465 VAL B 822 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 703 O GLU A 709 1.96 REMARK 500 OG SER A 332 O HOH A 2002 2.15 REMARK 500 N ALA A 776 O HOH A 2002 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 347 -88.10 -141.38 REMARK 500 HIS A 369 -136.34 -165.05 REMARK 500 ASP A 372 40.46 -78.18 REMARK 500 ASP A 385 32.17 -91.86 REMARK 500 ASP A 417 112.13 66.48 REMARK 500 ILE A 442 -39.52 98.94 REMARK 500 ALA A 472 -99.28 -40.31 REMARK 500 TYR A 473 119.11 66.47 REMARK 500 GLU A 477 -103.19 44.84 REMARK 500 VAL A 481 -82.40 -62.59 REMARK 500 TYR A 482 131.16 97.39 REMARK 500 ALA A 488 76.76 -67.80 REMARK 500 ASP A 490 -152.92 -60.93 REMARK 500 TYR A 491 -56.91 66.11 REMARK 500 LYS A 499 -83.65 169.72 REMARK 500 PRO A 500 -147.49 -75.73 REMARK 500 ALA A 501 34.64 -78.80 REMARK 500 LEU A 514 -120.53 -69.13 REMARK 500 LEU A 515 -71.13 143.88 REMARK 500 LYS A 564 -82.60 -89.30 REMARK 500 HIS A 597 -112.06 47.51 REMARK 500 THR A 646 -118.95 -118.56 REMARK 500 TYR A 695 61.68 69.51 REMARK 500 GLU A 709 -55.89 -141.67 REMARK 500 TYR A 710 144.34 69.09 REMARK 500 LYS A 720 177.33 78.46 REMARK 500 GLU A 732 -91.75 -79.26 REMARK 500 GLU A 733 -61.89 -140.97 REMARK 500 ALA A 751 -118.66 -124.40 REMARK 500 ALA A 776 103.24 112.21 REMARK 500 ASN B 339 -166.64 -72.09 REMARK 500 ILE B 348 83.08 62.52 REMARK 500 ASP B 372 43.65 -77.60 REMARK 500 ASP B 385 40.23 -102.78 REMARK 500 ASP B 417 123.20 67.42 REMARK 500 PRO B 437 -176.23 -65.90 REMARK 500 ILE B 442 -43.30 99.82 REMARK 500 LYS B 459 95.56 56.96 REMARK 500 ALA B 472 -92.48 -51.75 REMARK 500 TYR B 473 121.85 73.55 REMARK 500 ARG B 476 -150.84 -103.36 REMARK 500 ASN B 478 12.68 58.29 REMARK 500 ASP B 490 -51.48 57.52 REMARK 500 LYS B 499 -77.76 -110.58 REMARK 500 PRO B 500 -109.71 -38.64 REMARK 500 ASP B 543 41.70 -96.24 REMARK 500 LYS B 564 -73.26 -88.65 REMARK 500 HIS B 597 -123.34 45.87 REMARK 500 THR B 646 -116.85 -109.49 REMARK 500 TYR B 695 71.11 62.32 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 368 HIS A 369 74.19 REMARK 500 VAL A 498 LYS A 499 -45.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. DBREF 2VVZ A 319 822 UNP P62575 NANA_STRPN 319 822 DBREF 2VVZ B 319 822 UNP P62575 NANA_STRPN 319 822 SEQRES 1 A 504 GLU GLY ALA ALA LEU THR GLU LYS THR ASP ILE PHE GLU SEQRES 2 A 504 SER GLY ARG ASN GLY LYS PRO ASN LYS ASP GLY ILE LYS SEQRES 3 A 504 SER TYR ARG ILE PRO ALA LEU LEU LYS THR ASP LYS GLY SEQRES 4 A 504 THR LEU ILE ALA GLY ALA ASP GLU ARG ARG LEU HIS SER SEQRES 5 A 504 SER ASP TRP GLY ASP ILE GLY MET VAL ILE ARG ARG SER SEQRES 6 A 504 GLU ASP ASN GLY LYS THR TRP GLY ASP ARG VAL THR ILE SEQRES 7 A 504 THR ASN LEU ARG ASP ASN PRO LYS ALA SER ASP PRO SER SEQRES 8 A 504 ILE GLY SER PRO VAL ASN ILE ASP MET VAL LEU VAL GLN SEQRES 9 A 504 ASP PRO GLU THR LYS ARG ILE PHE SER ILE TYR ASP MET SEQRES 10 A 504 PHE PRO GLU GLY LYS GLY ILE PHE GLY MET SER SER GLN SEQRES 11 A 504 LYS GLU GLU ALA TYR LYS LYS ILE ASP GLY LYS THR TYR SEQRES 12 A 504 GLN ILE LEU TYR ARG GLU GLY GLU LYS GLY ALA TYR THR SEQRES 13 A 504 ILE ARG GLU ASN GLY THR VAL TYR THR PRO ASP GLY LYS SEQRES 14 A 504 ALA THR ASP TYR ARG VAL VAL VAL ASP PRO VAL LYS PRO SEQRES 15 A 504 ALA TYR SER ASP LYS GLY ASP LEU TYR LYS GLY ASN GLN SEQRES 16 A 504 LEU LEU GLY ASN ILE TYR PHE THR THR ASN LYS THR SER SEQRES 17 A 504 PRO PHE ARG ILE ALA LYS ASP SER TYR LEU TRP MET SER SEQRES 18 A 504 TYR SER ASP ASP ASP GLY LYS THR TRP SER ALA PRO GLN SEQRES 19 A 504 ASP ILE THR PRO MET VAL LYS ALA ASP TRP MET LYS PHE SEQRES 20 A 504 LEU GLY VAL GLY PRO GLY THR GLY ILE VAL LEU ARG ASN SEQRES 21 A 504 GLY PRO HIS LYS GLY ARG ILE LEU ILE PRO VAL TYR THR SEQRES 22 A 504 THR ASN ASN VAL SER HIS LEU ASN GLY SER GLN SER SER SEQRES 23 A 504 ARG ILE ILE TYR SER ASP ASP HIS GLY LYS THR TRP HIS SEQRES 24 A 504 ALA GLY GLU ALA VAL ASN ASP ASN ARG GLN VAL ASP GLY SEQRES 25 A 504 GLN LYS ILE HIS SER SER THR MET ASN ASN ARG ARG ALA SEQRES 26 A 504 GLN ASN THR GLU SER THR VAL VAL GLN LEU ASN ASN GLY SEQRES 27 A 504 ASP VAL LYS LEU PHE MET ARG GLY LEU THR GLY ASP LEU SEQRES 28 A 504 GLN VAL ALA THR SER LYS ASP GLY GLY VAL THR TRP GLU SEQRES 29 A 504 LYS ASP ILE LYS ARG TYR PRO GLN VAL LYS ASP VAL TYR SEQRES 30 A 504 VAL GLN MET SER ALA ILE HIS THR MET HIS GLU GLY LYS SEQRES 31 A 504 GLU TYR ILE ILE LEU SER ASN ALA GLY GLY PRO LYS ARG SEQRES 32 A 504 GLU ASN GLY MET VAL HIS LEU ALA ARG VAL GLU GLU ASN SEQRES 33 A 504 GLY GLU LEU THR TRP LEU LYS HIS ASN PRO ILE GLN LYS SEQRES 34 A 504 GLY GLU PHE ALA TYR ASN SER LEU GLN GLU LEU GLY ASN SEQRES 35 A 504 GLY GLU TYR GLY ILE LEU TYR GLU HIS THR GLU LYS GLY SEQRES 36 A 504 GLN ASN ALA TYR THR LEU SER PHE ARG LYS PHE ASN TRP SEQRES 37 A 504 ASP PHE LEU SER LYS ASP LEU ILE SER PRO THR GLU ALA SEQRES 38 A 504 LYS VAL LYS ARG THR ARG GLU MET GLY LYS GLY VAL ILE SEQRES 39 A 504 GLY LEU GLU PHE ASP SER GLU VAL LEU VAL SEQRES 1 B 504 GLU GLY ALA ALA LEU THR GLU LYS THR ASP ILE PHE GLU SEQRES 2 B 504 SER GLY ARG ASN GLY LYS PRO ASN LYS ASP GLY ILE LYS SEQRES 3 B 504 SER TYR ARG ILE PRO ALA LEU LEU LYS THR ASP LYS GLY SEQRES 4 B 504 THR LEU ILE ALA GLY ALA ASP GLU ARG ARG LEU HIS SER SEQRES 5 B 504 SER ASP TRP GLY ASP ILE GLY MET VAL ILE ARG ARG SER SEQRES 6 B 504 GLU ASP ASN GLY LYS THR TRP GLY ASP ARG VAL THR ILE SEQRES 7 B 504 THR ASN LEU ARG ASP ASN PRO LYS ALA SER ASP PRO SER SEQRES 8 B 504 ILE GLY SER PRO VAL ASN ILE ASP MET VAL LEU VAL GLN SEQRES 9 B 504 ASP PRO GLU THR LYS ARG ILE PHE SER ILE TYR ASP MET SEQRES 10 B 504 PHE PRO GLU GLY LYS GLY ILE PHE GLY MET SER SER GLN SEQRES 11 B 504 LYS GLU GLU ALA TYR LYS LYS ILE ASP GLY LYS THR TYR SEQRES 12 B 504 GLN ILE LEU TYR ARG GLU GLY GLU LYS GLY ALA TYR THR SEQRES 13 B 504 ILE ARG GLU ASN GLY THR VAL TYR THR PRO ASP GLY LYS SEQRES 14 B 504 ALA THR ASP TYR ARG VAL VAL VAL ASP PRO VAL LYS PRO SEQRES 15 B 504 ALA TYR SER ASP LYS GLY ASP LEU TYR LYS GLY ASN GLN SEQRES 16 B 504 LEU LEU GLY ASN ILE TYR PHE THR THR ASN LYS THR SER SEQRES 17 B 504 PRO PHE ARG ILE ALA LYS ASP SER TYR LEU TRP MET SER SEQRES 18 B 504 TYR SER ASP ASP ASP GLY LYS THR TRP SER ALA PRO GLN SEQRES 19 B 504 ASP ILE THR PRO MET VAL LYS ALA ASP TRP MET LYS PHE SEQRES 20 B 504 LEU GLY VAL GLY PRO GLY THR GLY ILE VAL LEU ARG ASN SEQRES 21 B 504 GLY PRO HIS LYS GLY ARG ILE LEU ILE PRO VAL TYR THR SEQRES 22 B 504 THR ASN ASN VAL SER HIS LEU ASN GLY SER GLN SER SER SEQRES 23 B 504 ARG ILE ILE TYR SER ASP ASP HIS GLY LYS THR TRP HIS SEQRES 24 B 504 ALA GLY GLU ALA VAL ASN ASP ASN ARG GLN VAL ASP GLY SEQRES 25 B 504 GLN LYS ILE HIS SER SER THR MET ASN ASN ARG ARG ALA SEQRES 26 B 504 GLN ASN THR GLU SER THR VAL VAL GLN LEU ASN ASN GLY SEQRES 27 B 504 ASP VAL LYS LEU PHE MET ARG GLY LEU THR GLY ASP LEU SEQRES 28 B 504 GLN VAL ALA THR SER LYS ASP GLY GLY VAL THR TRP GLU SEQRES 29 B 504 LYS ASP ILE LYS ARG TYR PRO GLN VAL LYS ASP VAL TYR SEQRES 30 B 504 VAL GLN MET SER ALA ILE HIS THR MET HIS GLU GLY LYS SEQRES 31 B 504 GLU TYR ILE ILE LEU SER ASN ALA GLY GLY PRO LYS ARG SEQRES 32 B 504 GLU ASN GLY MET VAL HIS LEU ALA ARG VAL GLU GLU ASN SEQRES 33 B 504 GLY GLU LEU THR TRP LEU LYS HIS ASN PRO ILE GLN LYS SEQRES 34 B 504 GLY GLU PHE ALA TYR ASN SER LEU GLN GLU LEU GLY ASN SEQRES 35 B 504 GLY GLU TYR GLY ILE LEU TYR GLU HIS THR GLU LYS GLY SEQRES 36 B 504 GLN ASN ALA TYR THR LEU SER PHE ARG LYS PHE ASN TRP SEQRES 37 B 504 ASP PHE LEU SER LYS ASP LEU ILE SER PRO THR GLU ALA SEQRES 38 B 504 LYS VAL LYS ARG THR ARG GLU MET GLY LYS GLY VAL ILE SEQRES 39 B 504 GLY LEU GLU PHE ASP SER GLU VAL LEU VAL HET DAN A1792 20 HET CL A1793 1 HET DAN B1792 20 HETNAM DAN 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID HETNAM CL CHLORIDE ION HETSYN DAN NEU5AC2EN FORMUL 3 DAN 2(C11 H17 N O8) FORMUL 4 CL CL 1- FORMUL 6 HOH *124(H2 O) HELIX 1 1 ILE A 554 LYS A 559 1 6 HELIX 2 2 TRP A 786 LYS A 791 1 6 HELIX 3 3 ASP B 407 GLY B 411 5 5 HELIX 4 4 ILE B 554 LYS B 559 1 6 HELIX 5 5 ASN B 578 LYS B 582 5 5 HELIX 6 6 SER B 596 SER B 601 1 6 HELIX 7 7 TRP B 786 LYS B 791 1 6 SHEET 1 AA 4 THR A 327 PHE A 330 0 SHEET 2 AA 4 THR A 778 ASN A 785 -1 O LEU A 779 N ILE A 329 SHEET 3 AA 4 GLU A 762 HIS A 769 -1 O TYR A 763 N PHE A 784 SHEET 4 AA 4 ASN A 753 GLY A 759 -1 O SER A 754 N LEU A 766 SHEET 1 AB 3 SER A 345 TYR A 346 0 SHEET 2 AB 3 LEU A 359 ARG A 366 -1 O ARG A 366 N SER A 345 SHEET 3 AB 3 ALA A 350 LYS A 353 -1 O ALA A 350 N GLY A 362 SHEET 1 AC 4 SER A 345 TYR A 346 0 SHEET 2 AC 4 LEU A 359 ARG A 366 -1 O ARG A 366 N SER A 345 SHEET 3 AC 4 ILE A 376 SER A 383 -1 O GLY A 377 N GLU A 365 SHEET 4 AC 4 VAL A 394 THR A 397 -1 O VAL A 394 N ILE A 380 SHEET 1 AD 5 GLN A 552 ASP A 553 0 SHEET 2 AD 5 TYR A 535 SER A 541 -1 O MET A 538 N GLN A 552 SHEET 3 AD 5 ILE A 429 PHE A 436 -1 O ILE A 429 N SER A 541 SHEET 4 AD 5 VAL A 414 GLN A 422 -1 O VAL A 414 N PHE A 436 SHEET 5 AD 5 GLY A 571 THR A 572 1 O GLY A 571 N LEU A 420 SHEET 1 AE 2 TYR A 453 ILE A 456 0 SHEET 2 AE 2 LYS A 459 GLN A 462 -1 O LYS A 459 N ILE A 456 SHEET 1 AF 2 TYR A 465 ARG A 466 0 SHEET 2 AF 2 PHE A 528 ARG A 529 -1 O ARG A 529 N TYR A 465 SHEET 1 AG 3 VAL A 493 VAL A 494 0 SHEET 2 AG 3 ASP A 507 TYR A 509 -1 O TYR A 509 N VAL A 493 SHEET 3 AG 3 LEU A 515 ASN A 517 -1 O GLY A 516 N LEU A 508 SHEET 1 AH 3 LEU A 566 VAL A 568 0 SHEET 2 AH 3 ILE A 585 THR A 591 -1 O TYR A 590 N GLY A 567 SHEET 3 AH 3 ILE A 574 VAL A 575 -1 O ILE A 574 N LEU A 586 SHEET 1 AI 4 LEU A 566 VAL A 568 0 SHEET 2 AI 4 ILE A 585 THR A 591 -1 O TYR A 590 N GLY A 567 SHEET 3 AI 4 SER A 603 SER A 609 -1 O SER A 603 N THR A 591 SHEET 4 AI 4 HIS A 617 ALA A 618 -1 O HIS A 617 N TYR A 608 SHEET 1 AJ 2 ARG A 626 VAL A 628 0 SHEET 2 AJ 2 GLN A 631 ILE A 633 -1 O GLN A 631 N VAL A 628 SHEET 1 AK 4 SER A 648 GLN A 652 0 SHEET 2 AK 4 VAL A 658 MET A 662 -1 O LYS A 659 N VAL A 651 SHEET 3 AK 4 ASP A 668 SER A 674 -1 O GLN A 670 N MET A 662 SHEET 4 AK 4 LYS A 686 LYS A 692 -1 O LYS A 686 N VAL A 671 SHEET 1 AL 4 SER A 699 HIS A 702 0 SHEET 2 AL 4 ILE A 711 ALA A 716 -1 O ILE A 712 N ILE A 701 SHEET 3 AL 4 GLU A 722 VAL A 731 -1 O MET A 725 N ASN A 715 SHEET 4 AL 4 LEU A 737 GLU A 749 -1 O THR A 738 N ARG A 730 SHEET 1 BA 7 THR B 327 ASP B 328 0 SHEET 2 BA 7 SER B 780 PHE B 784 -1 O PHE B 781 N THR B 327 SHEET 3 BA 7 GLU B 762 HIS B 769 -1 O TYR B 763 N PHE B 784 SHEET 4 BA 7 LEU B 737 GLY B 759 -1 N ALA B 751 O GLU B 768 SHEET 5 BA 7 GLU B 722 VAL B 731 -1 N ASN B 723 O GLY B 748 SHEET 6 BA 7 ILE B 711 ASN B 715 -1 O ILE B 711 N ALA B 729 SHEET 7 BA 7 SER B 699 HIS B 702 -1 O SER B 699 N SER B 714 SHEET 1 BB 4 SER B 345 LYS B 353 0 SHEET 2 BB 4 LEU B 359 ARG B 366 -1 O ILE B 360 N LEU B 352 SHEET 3 BB 4 ILE B 376 SER B 383 -1 O GLY B 377 N GLU B 365 SHEET 4 BB 4 VAL B 394 THR B 397 -1 O VAL B 394 N ILE B 380 SHEET 1 BC 5 GLN B 552 ASP B 553 0 SHEET 2 BC 5 TYR B 535 SER B 541 -1 O MET B 538 N GLN B 552 SHEET 3 BC 5 ILE B 429 PHE B 436 -1 O ILE B 429 N SER B 541 SHEET 4 BC 5 VAL B 414 GLN B 422 -1 O VAL B 414 N PHE B 436 SHEET 5 BC 5 GLY B 571 THR B 572 1 O GLY B 571 N LEU B 420 SHEET 1 BD 7 TYR B 453 LYS B 455 0 SHEET 2 BD 7 THR B 460 ARG B 466 -1 O TYR B 461 N LYS B 454 SHEET 3 BD 7 THR B 474 ILE B 475 -1 O ILE B 475 N GLN B 462 SHEET 4 BD 7 THR B 480 TYR B 482 -1 O TYR B 482 N THR B 474 SHEET 5 BD 7 ALA B 488 VAL B 494 -1 N THR B 489 O VAL B 481 SHEET 6 BD 7 ASP B 507 LYS B 510 -1 O TYR B 509 N VAL B 493 SHEET 7 BD 7 GLN B 513 ASN B 517 -1 O GLN B 513 N LYS B 510 SHEET 1 BE 3 TYR B 453 LYS B 455 0 SHEET 2 BE 3 THR B 460 ARG B 466 -1 O TYR B 461 N LYS B 454 SHEET 3 BE 3 PHE B 528 ILE B 530 -1 O ARG B 529 N TYR B 465 SHEET 1 BF 7 LEU B 566 VAL B 568 0 SHEET 2 BF 7 ILE B 585 THR B 591 -1 O TYR B 590 N GLY B 567 SHEET 3 BF 7 ILE B 574 VAL B 575 -1 O ILE B 574 N LEU B 586 SHEET 4 BF 7 ILE B 585 THR B 591 -1 O LEU B 586 N ILE B 574 SHEET 5 BF 7 HIS B 617 ALA B 618 0 SHEET 6 BF 7 SER B 603 SER B 609 -1 O TYR B 608 N HIS B 617 SHEET 7 BF 7 ILE B 585 THR B 591 -1 O ILE B 585 N SER B 609 SHEET 1 BG 2 ARG B 626 VAL B 628 0 SHEET 2 BG 2 GLN B 631 ILE B 633 -1 O GLN B 631 N VAL B 628 SHEET 1 BH 4 SER B 648 GLN B 652 0 SHEET 2 BH 4 VAL B 658 MET B 662 -1 O LYS B 659 N VAL B 651 SHEET 3 BH 4 ASP B 668 SER B 674 -1 O GLN B 670 N MET B 662 SHEET 4 BH 4 LYS B 686 LYS B 692 -1 O LYS B 686 N VAL B 671 CISPEP 1 LYS A 708 GLU A 709 0 -18.28 CISPEP 2 GLY A 718 PRO A 719 0 -6.62 CISPEP 3 ASN A 734 GLY A 735 0 -10.72 CISPEP 4 ALA A 776 TYR A 777 0 -8.46 CISPEP 5 GLY B 458 LYS B 459 0 -9.99 CISPEP 6 LYS B 708 GLU B 709 0 1.77 CISPEP 7 GLY B 718 PRO B 719 0 -2.66 CISPEP 8 ASN B 734 GLY B 735 0 0.23 CISPEP 9 ALA B 776 TYR B 777 0 0.42 CISPEP 10 ASN B 785 TRP B 786 0 -7.97 CRYST1 49.206 95.626 226.596 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020323 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004413 0.00000