HEADER OXIDOREDUCTASE 26-JUN-08 2VWP TITLE HALOFERAX MEDITERRANEI GLUCOSE DEHYDROGENASE IN COMPLEX WITH NADPH AND TITLE 2 ZN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.47; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOFERAX MEDITERRANEI; SOURCE 3 ORGANISM_TAXID: 2252; SOURCE 4 ATCC: 33500; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS OXIDOREDUCTASE, GLUCOSE DEHYDROGENASE, ZINC DEPENDENT MEDIUM CHAIN KEYWDS 2 ALCOHOL DEHYDROGENASE FAMILY, ALCOHOL DEHYDROGENASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.BAKER,K.L.BRITTON,M.FISHER,J.ESCLAPEZ,C.PIRE,M.J.BONETE,J.FERRER, AUTHOR 2 D.W.RICE REVDAT 5 13-DEC-23 2VWP 1 REMARK LINK REVDAT 4 09-AUG-17 2VWP 1 JRNL REVDAT 3 03-FEB-09 2VWP 1 JRNL REMARK REVDAT 2 20-JAN-09 2VWP 1 JRNL REVDAT 1 13-JAN-09 2VWP 0 JRNL AUTH P.J.BAKER,K.L.BRITTON,M.FISHER,J.ESCLAPEZ,C.PIRE,M.J.BONETE, JRNL AUTH 2 J.FERRER,D.W.RICE JRNL TITL ACTIVE SITE DYNAMICS IN THE ZINC-DEPENDENT MEDIUM CHAIN JRNL TITL 2 ALCOHOL DEHYDROGENASE SUPERFAMILY. JRNL REF PROC. NATL. ACAD. SCI. V. 106 779 2009 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 19131516 JRNL DOI 10.1073/PNAS.0807529106 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 30211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.581 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2891 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3947 ; 1.287 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 5.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;37.876 ;24.380 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 441 ;11.766 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.354 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2246 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1313 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1980 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 230 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.138 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1832 ; 5.878 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2878 ; 5.615 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1193 ; 5.399 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1069 ; 4.687 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1290036710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2B5V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70% 2-METHYL-2,4,-PENTANEDIOL, 1MM REMARK 280 NADPH, 1MM ZNCL2, 100MM HEPES PH7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.28450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.86250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.82300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.28450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.86250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.82300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.28450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.86250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.82300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.28450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.86250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.82300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 33 -67.59 -95.23 REMARK 500 ASN A 73 -132.71 51.99 REMARK 500 ILE A 117 -56.26 -132.92 REMARK 500 ARG A 207 48.61 -147.21 REMARK 500 TYR A 240 -93.40 -120.82 REMARK 500 TRP A 278 110.62 -165.14 REMARK 500 ASN A 303 -160.88 67.61 REMARK 500 ILE A 348 -79.38 -104.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 800 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 NE2 REMARK 620 2 GLU A 64 OE2 103.1 REMARK 620 3 GLU A 150 OE1 110.0 99.7 REMARK 620 4 HOH A2245 O 123.8 111.2 106.4 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VWG RELATED DB: PDB REMARK 900 HALOFERAX MEDITERRANEI GLUCOSE DEHYDROGENASE IN COMPLEX WITH NADP, REMARK 900 ZN AND GLUCONOLACTONE. REMARK 900 RELATED ID: 2B5W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF D38C GLUCOSE DEHYDROGENASE MUTANT REMARK 900 FROMHALOFERAX MEDITERRANEI REMARK 900 RELATED ID: 2B5V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE FROM REMARK 900 HALOFERAXMEDITERRANEI REMARK 900 RELATED ID: 2VWH RELATED DB: PDB REMARK 900 HALOFERAX MEDITERRANEI GLUCOSE DEHYDROGENASE IN COMPLEX WITH NADP, REMARK 900 ZN AND GLUCOSE. REMARK 900 RELATED ID: 2VWQ RELATED DB: PDB REMARK 900 HALOFERAX MEDITERRANEI GLUCOSE DEHYDROGENASE IN COMPLEX WITH NADP REMARK 900 AND ZN. DBREF 2VWP A 1 357 UNP Q977U7 Q977U7_HALME 1 357 SEQRES 1 A 357 MET LYS ALA ILE ALA VAL LYS ARG GLY GLU ASP ARG PRO SEQRES 2 A 357 VAL VAL ILE GLU LYS PRO ARG PRO GLU PRO GLU SER GLY SEQRES 3 A 357 GLU ALA LEU VAL ARG THR LEU ARG VAL GLY VAL ASP GLY SEQRES 4 A 357 THR ASP HIS GLU VAL ILE ALA GLY GLY HIS GLY GLY PHE SEQRES 5 A 357 PRO GLU GLY GLU ASP HIS LEU VAL LEU GLY HIS GLU ALA SEQRES 6 A 357 VAL GLY VAL VAL VAL ASP PRO ASN ASP THR GLU LEU GLU SEQRES 7 A 357 GLU GLY ASP ILE VAL VAL PRO THR VAL ARG ARG PRO PRO SEQRES 8 A 357 ALA SER GLY THR ASN GLU TYR PHE GLU ARG ASP GLN PRO SEQRES 9 A 357 ASP MET ALA PRO ASP GLY MET TYR PHE GLU ARG GLY ILE SEQRES 10 A 357 VAL GLY ALA HIS GLY TYR MET SER GLU PHE PHE THR SER SEQRES 11 A 357 PRO GLU LYS TYR LEU VAL ARG ILE PRO ARG SER GLN ALA SEQRES 12 A 357 GLU LEU GLY PHE LEU ILE GLU PRO ILE SER ILE THR GLU SEQRES 13 A 357 LYS ALA LEU GLU HIS ALA TYR ALA SER ARG SER ALA PHE SEQRES 14 A 357 ASP TRP ASP PRO SER SER ALA PHE VAL LEU GLY ASN GLY SEQRES 15 A 357 SER LEU GLY LEU LEU THR LEU ALA MET LEU LYS VAL ASP SEQRES 16 A 357 ASP LYS GLY TYR GLU ASN LEU TYR CYS LEU GLY ARG ARG SEQRES 17 A 357 ASP ARG PRO ASP PRO THR ILE ASP ILE ILE GLU GLU LEU SEQRES 18 A 357 ASP ALA THR TYR VAL ASP SER ARG GLN THR PRO VAL GLU SEQRES 19 A 357 ASP VAL PRO ASP VAL TYR GLU GLN MET ASP PHE ILE TYR SEQRES 20 A 357 GLU ALA THR GLY PHE PRO LYS HIS ALA ILE GLN SER VAL SEQRES 21 A 357 GLN ALA LEU ALA PRO ASN GLY VAL GLY ALA LEU LEU GLY SEQRES 22 A 357 VAL PRO SER ASP TRP ALA PHE GLU VAL ASP ALA GLY ALA SEQRES 23 A 357 PHE HIS ARG GLU MET VAL LEU HIS ASN LYS ALA LEU VAL SEQRES 24 A 357 GLY SER VAL ASN SER HIS VAL GLU HIS PHE GLU ALA ALA SEQRES 25 A 357 THR VAL THR PHE THR LYS LEU PRO LYS TRP PHE LEU GLU SEQRES 26 A 357 ASP LEU VAL THR GLY VAL HIS PRO LEU SER GLU PHE GLU SEQRES 27 A 357 ALA ALA PHE ASP ASP ASP ASP THR THR ILE LYS THR ALA SEQRES 28 A 357 ILE GLU PHE SER THR VAL HET NDP A 500 48 HET ZN A 800 1 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM ZN ZINC ION FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *245(H2 O) HELIX 1 1 ASP A 38 GLY A 47 1 10 HELIX 2 2 ASN A 96 ARG A 101 1 6 HELIX 3 3 GLN A 103 ALA A 107 5 5 HELIX 4 4 PRO A 139 ALA A 143 5 5 HELIX 5 5 LEU A 145 PHE A 147 5 3 HELIX 6 6 LEU A 148 ARG A 166 1 19 HELIX 7 7 GLY A 182 ASP A 195 1 14 HELIX 8 8 ASP A 212 LEU A 221 1 10 HELIX 9 9 PRO A 232 GLU A 234 5 3 HELIX 10 10 ASP A 235 TYR A 240 1 6 HELIX 11 11 PHE A 252 ALA A 262 1 11 HELIX 12 12 ASP A 283 HIS A 294 1 12 HELIX 13 13 HIS A 305 LEU A 319 1 15 HELIX 14 14 PRO A 320 LEU A 327 1 8 HELIX 15 15 SER A 335 ASP A 342 5 8 SHEET 1 AA 3 VAL A 14 GLU A 17 0 SHEET 2 AA 3 LYS A 2 LYS A 7 -1 O ALA A 3 N ILE A 16 SHEET 3 AA 3 HIS A 58 VAL A 60 -1 O LEU A 59 N VAL A 6 SHEET 1 AB 5 PHE A 127 PRO A 131 0 SHEET 2 AB 5 GLU A 27 GLY A 36 -1 O ALA A 28 N SER A 130 SHEET 3 AB 5 GLU A 64 ASP A 71 -1 O GLU A 64 N GLY A 36 SHEET 4 AB 5 ILE A 82 PRO A 85 -1 O VAL A 83 N GLY A 67 SHEET 5 AB 5 LEU A 135 ARG A 137 -1 O VAL A 136 N VAL A 84 SHEET 1 AC 4 PHE A 127 PRO A 131 0 SHEET 2 AC 4 GLU A 27 GLY A 36 -1 O ALA A 28 N SER A 130 SHEET 3 AC 4 LYS A 349 GLU A 353 -1 O ILE A 352 N VAL A 35 SHEET 4 AC 4 VAL A 328 PRO A 333 1 N THR A 329 O LYS A 349 SHEET 1 AD 2 ARG A 88 ARG A 89 0 SHEET 2 AD 2 PHE A 113 GLU A 114 -1 O PHE A 113 N ARG A 89 SHEET 1 AE 6 THR A 224 ASP A 227 0 SHEET 2 AE 6 ASN A 201 GLY A 206 1 O LEU A 202 N THR A 224 SHEET 3 AE 6 SER A 175 LEU A 179 1 O ALA A 176 N TYR A 203 SHEET 4 AE 6 MET A 243 GLU A 248 1 O PHE A 245 N PHE A 177 SHEET 5 AE 6 LEU A 263 LEU A 271 1 N ALA A 264 O MET A 243 SHEET 6 AE 6 ALA A 297 GLY A 300 1 O ALA A 297 N GLY A 269 LINK NE2 HIS A 63 ZN ZN A 800 1555 1555 2.31 LINK OE2 GLU A 64 ZN ZN A 800 1555 1555 2.28 LINK OE1 GLU A 150 ZN ZN A 800 1555 1555 2.18 LINK ZN ZN A 800 O HOH A2245 1555 1555 2.17 CISPEP 1 ARG A 210 PRO A 211 0 -1.73 SITE 1 AC1 30 ILE A 154 GLY A 180 ASN A 181 GLY A 182 SITE 2 AC1 30 LEU A 184 LEU A 205 GLY A 206 ARG A 207 SITE 3 AC1 30 ARG A 208 SER A 228 ALA A 249 GLY A 251 SITE 4 AC1 30 PHE A 252 HIS A 255 LEU A 272 VAL A 274 SITE 5 AC1 30 VAL A 292 SER A 301 VAL A 302 ASN A 303 SITE 6 AC1 30 HOH A2033 HOH A2234 HOH A2235 HOH A2236 SITE 7 AC1 30 HOH A2237 HOH A2238 HOH A2239 HOH A2240 SITE 8 AC1 30 HOH A2242 HOH A2244 SITE 1 AC2 4 HIS A 63 GLU A 64 GLU A 150 HOH A2245 CRYST1 60.569 107.725 153.646 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006508 0.00000