HEADER IMMUNE SYSTEM 10-JUL-08 2VXV TITLE CRYSTAL STRUCTURE OF HUMAN IGG ABT-325 FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN IGG ABT-325; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HUMAN IGG ABT-325; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 8 EXPRESSION_SYSTEM_TISSUE: OVARY; SOURCE 9 OTHER_DETAILS: ABT-325 IS A RECOMBINANT HUMAN MONOCLONAL ANTIBODY, SOURCE 10 DERIVED BY IN VITRO SELECTION OF HUMAN IMMUNOGLOBULIN LIBRARIES.; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 18 EXPRESSION_SYSTEM_TISSUE: OVARY; SOURCE 19 OTHER_DETAILS: ABT-325 IS A RECOMBINANT HUMAN MONOCLONAL ANTIBODY, SOURCE 20 DERIVED BY IN VITRO SELECTION OF HUMAN IMMUNOGLOBULIN LIBRARIES. KEYWDS IMMUNE SYSTEM, IL-18, FAB, TH1/TH2 CELLS, AUTOIMMUNITY EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ARGIRIADI,T.XIANG,C.WU,T.GHAYUR,D.W.BORHANI REVDAT 7 13-DEC-23 2VXV 1 REMARK REVDAT 6 03-APR-19 2VXV 1 SOURCE REVDAT 5 06-MAR-19 2VXV 1 REMARK REVDAT 4 13-JUL-11 2VXV 1 VERSN REVDAT 3 08-SEP-09 2VXV 1 JRNL REVDAT 2 07-JUL-09 2VXV 1 JRNL REVDAT 1 23-JUN-09 2VXV 0 JRNL AUTH M.A.ARGIRIADI,T.XIANG,C.WU,T.GHAYUR,D.W.BORHANI JRNL TITL UNUSUAL WATER-MEDIATED ANTIGENIC RECOGNITION OF THE JRNL TITL 2 PROINFLAMMATORY CYTOKINE INTERLEUKIN-18. JRNL REF J.BIOL.CHEM. V. 284 24478 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19553661 JRNL DOI 10.1074/JBC.M109.023887 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 78910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4138 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5150 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 576 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 16.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3693 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2464 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5076 ; 1.569 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6054 ; 0.903 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 6.478 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;34.475 ;24.485 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;11.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;23.278 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 561 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4255 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 739 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 550 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2488 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1802 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2067 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 377 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3024 ; 1.257 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3879 ; 1.504 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1597 ; 2.601 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1197 ; 3.533 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 114 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8910 18.5300 -0.6010 REMARK 3 T TENSOR REMARK 3 T11: -0.0303 T22: -0.0268 REMARK 3 T33: -0.0190 T12: 0.0027 REMARK 3 T13: -0.0089 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.6796 L22: 2.0951 REMARK 3 L33: 0.8282 L12: 0.7570 REMARK 3 L13: 0.3081 L23: 0.5693 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: 0.0532 S13: 0.0622 REMARK 3 S21: -0.0732 S22: 0.0653 S23: 0.0505 REMARK 3 S31: -0.0262 S32: 0.0458 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 115 H 214 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6320 -10.7420 4.0040 REMARK 3 T TENSOR REMARK 3 T11: -0.0188 T22: -0.0302 REMARK 3 T33: -0.0265 T12: -0.0016 REMARK 3 T13: -0.0117 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.1837 L22: 1.0810 REMARK 3 L33: 1.2376 L12: -0.1917 REMARK 3 L13: -0.0080 L23: -0.2247 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.0589 S13: -0.0555 REMARK 3 S21: 0.0074 S22: 0.0078 S23: 0.0529 REMARK 3 S31: 0.0535 S32: -0.0492 S33: 0.0131 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 108 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1070 11.4600 19.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: -0.0188 REMARK 3 T33: -0.0484 T12: -0.0073 REMARK 3 T13: -0.0094 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.0231 L22: 1.5876 REMARK 3 L33: 0.7422 L12: 0.6414 REMARK 3 L13: 0.0298 L23: -0.3882 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: -0.0506 S13: 0.0485 REMARK 3 S21: 0.1364 S22: -0.0442 S23: 0.0432 REMARK 3 S31: 0.0241 S32: 0.0080 S33: -0.0331 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 109 L 213 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9400 -20.4320 9.1210 REMARK 3 T TENSOR REMARK 3 T11: -0.0270 T22: -0.0261 REMARK 3 T33: -0.0250 T12: -0.0029 REMARK 3 T13: -0.0043 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.3774 L22: 1.3333 REMARK 3 L33: 1.3062 L12: -0.0913 REMARK 3 L13: 0.0846 L23: 0.5428 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.0112 S13: -0.0522 REMARK 3 S21: 0.0387 S22: -0.0172 S23: 0.0362 REMARK 3 S31: 0.0096 S32: -0.0290 S33: 0.0239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1290036817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000037 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83126 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1FNS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ABT-325 FAB FRAGMENT (20 MG/ML, 2 REMARK 280 MICROLITERS [UL]) WAS MIXED WITH 2 UL OF A RESERVOIR SOLUTION REMARK 280 CONSISTING OF 25 TO 30% POLYETHYLENEGLYCOL (PEG) 400, 100 MM REMARK 280 CAPS, PH 10.5 AND SUSPENDED OVER THE RESERVOIR AT 277 K. ROD- REMARK 280 LIKE CRYSTALS APPEARED WITHIN ONE DAY. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.20300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.63550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.03450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.63550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.20300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.03450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER H 177 O2 GOL H 1216 1.83 REMARK 500 O HOH H 2012 O HOH H 2171 2.13 REMARK 500 O HOH H 2127 O HOH H 2268 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA H 88 163.79 179.84 REMARK 500 ASP H 144 60.07 70.26 REMARK 500 SER L 30 -121.26 49.15 REMARK 500 SER L 30 -117.73 53.31 REMARK 500 ALA L 51 -36.14 68.47 REMARK 500 ALA L 51 -36.14 71.79 REMARK 500 ALA L 84 -179.84 -177.44 REMARK 500 TYR L 91 42.47 -143.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H2044 DISTANCE = 6.56 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS H 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 1216 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VXU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MURINE REFERENCE ANTIBODY 125-2H FAB FRAGMENT REMARK 900 RELATED ID: 2VXT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN IL-18 COMPLEXED TO MURINE REFERENCE REMARK 900 ANTIBODY 125-2H FAB DBREF 2VXV H 1 215 PDB 2VXV 2VXV 1 215 DBREF 2VXV L 1 213 PDB 2VXV 2VXV 1 213 SEQRES 1 H 223 GLU VAL GLN LEU VAL GLN SER GLY THR GLU VAL LYS LYS SEQRES 2 H 223 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY SER GLY SEQRES 3 H 223 TYR THR VAL THR SER TYR TRP ILE GLY TRP VAL ARG GLN SEQRES 4 H 223 MET PRO GLY LYS GLY LEU GLU TRP MET GLY PHE ILE TYR SEQRES 5 H 223 PRO GLY ASP SER GLU THR ARG TYR SER PRO THR PHE GLN SEQRES 6 H 223 GLY GLN VAL THR ILE SER ALA ASP LYS SER PHE ASN THR SEQRES 7 H 223 ALA PHE LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 223 ALA MET TYR TYR CYS ALA ARG VAL GLY SER GLY TRP TYR SEQRES 9 H 223 PRO TYR THR PHE ASP ILE TRP GLY GLN GLY THR MET VAL SEQRES 10 H 223 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 223 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 223 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 223 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 223 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 223 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 223 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 223 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 223 LYS SER SEQRES 1 L 214 GLU ILE VAL MET THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 L 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 214 GLU SER ILE SER SER ASN LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN ALA PRO ARG LEU PHE ILE TYR THR ALA SER SEQRES 5 L 214 THR ARG ALA THR ASP ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ASN ASN TRP PRO SER ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 L 214 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 214 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 214 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 214 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 214 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 214 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 214 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 214 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 214 SER PHE ASN ARG GLY GLU HET CXS H1215 14 HET GOL H1216 6 HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CXS C9 H19 N O3 S FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *576(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 LYS H 73 PHE H 75 5 3 HELIX 3 3 LYS H 83 THR H 87 5 5 HELIX 4 4 SER H 156 ALA H 158 5 3 HELIX 5 5 SER H 187 LEU H 189 5 3 HELIX 6 6 LYS H 201 ASN H 204 5 4 HELIX 7 7 GLN L 79 PHE L 83 5 5 HELIX 8 8 SER L 121 LYS L 126 1 6 HELIX 9 9 LYS L 183 LYS L 188 1 6 SHEET 1 HA 4 GLN H 3 GLN H 6 0 SHEET 2 HA 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 HA 4 THR H 77 TRP H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 HA 4 THR H 68 ASP H 72 -1 O THR H 68 N GLN H 81 SHEET 1 HB 6 GLU H 10 LYS H 12 0 SHEET 2 HB 6 THR H 107 VAL H 111 1 O MET H 108 N GLU H 10 SHEET 3 HB 6 ALA H 88 VAL H 95 -1 O ALA H 88 N VAL H 109 SHEET 4 HB 6 ILE H 34 GLN H 39 -1 O GLY H 35 N ALA H 93 SHEET 5 HB 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 HB 6 THR H 57 TYR H 59 -1 O ARG H 58 N PHE H 50 SHEET 1 HC 4 GLU H 10 LYS H 12 0 SHEET 2 HC 4 THR H 107 VAL H 111 1 O MET H 108 N GLU H 10 SHEET 3 HC 4 ALA H 88 VAL H 95 -1 O ALA H 88 N VAL H 109 SHEET 4 HC 4 PHE H 100D TRP H 103 -1 N ASP H 101 O ARG H 94 SHEET 1 HD 4 SER H 120 LEU H 124 0 SHEET 2 HD 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 HD 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 HD 4 VAL H 163 THR H 165 -1 O HIS H 164 N VAL H 181 SHEET 1 HE 4 SER H 120 LEU H 124 0 SHEET 2 HE 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 HE 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 HE 4 VAL H 169 LEU H 170 -1 O VAL H 169 N SER H 177 SHEET 1 HF 3 THR H 151 TRP H 154 0 SHEET 2 HF 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 HF 3 THR H 205 LYS H 210 -1 O THR H 205 N HIS H 200 SHEET 1 LA 4 MET L 4 SER L 7 0 SHEET 2 LA 4 ALA L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 LA 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 LA 4 PHE L 62 SER L 67 -1 O SER L 63 N THR L 74 SHEET 1 LB 6 THR L 10 VAL L 13 0 SHEET 2 LB 6 THR L 102 ILE L 106 1 O ARG L 103 N LEU L 11 SHEET 3 LB 6 ALA L 84 ASN L 93 -1 O ALA L 84 N LEU L 104 SHEET 4 LB 6 LEU L 33 GLN L 38 -1 O ALA L 34 N GLN L 89 SHEET 5 LB 6 ARG L 45 TYR L 49 -1 O ARG L 45 N GLN L 37 SHEET 6 LB 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 LC 4 THR L 10 VAL L 13 0 SHEET 2 LC 4 THR L 102 ILE L 106 1 O ARG L 103 N LEU L 11 SHEET 3 LC 4 ALA L 84 ASN L 93 -1 O ALA L 84 N LEU L 104 SHEET 4 LC 4 SER L 95A PHE L 98 -1 O SER L 95A N ASN L 93 SHEET 1 LD 4 SER L 114 PHE L 118 0 SHEET 2 LD 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 LD 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 LD 4 SER L 159 VAL L 163 -1 O GLN L 160 N THR L 178 SHEET 1 LE 4 ALA L 153 GLN L 155 0 SHEET 2 LE 4 LYS L 145 VAL L 150 -1 O TRP L 148 N GLN L 155 SHEET 3 LE 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 LE 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.02 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.07 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.10 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.11 CISPEP 1 PHE H 146 PRO H 147 0 -10.10 CISPEP 2 GLU H 148 PRO H 149 0 -1.80 CISPEP 3 GLU H 148 PRO H 149 0 -6.54 CISPEP 4 SER L 7 PRO L 8 0 -5.54 CISPEP 5 SER L 7 PRO L 8 0 -12.25 CISPEP 6 TRP L 94 PRO L 95 0 8.00 CISPEP 7 TYR L 140 PRO L 141 0 -1.08 SITE 1 AC1 13 LYS H 73 SER H 156 ASP H 208 HOH H2226 SITE 2 AC1 13 HOH H2295 HOH H2297 HOH H2298 HOH H2299 SITE 3 AC1 13 HOH H2300 GLN L 155 LEU L 181 ASP L 185 SITE 4 AC1 13 HIS L 189 SITE 1 AC2 10 LEU H 141 VAL H 169 SER H 177 LEU H 178 SITE 2 AC2 10 SER H 179 HOH H2246 HOH H2301 HOH H2302 SITE 3 AC2 10 THR L 178 HOH L2237 CRYST1 64.406 74.069 107.271 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015527 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009322 0.00000