HEADER TRANSCRIPTION 16-JUL-08 2VY2 TITLE STRUCTURE OF LEAFY TRANSCRIPTION FACTOR FROM ARABIDOPSIS THALIANA IN TITLE 2 COMPLEX WITH DNA FROM AG-I PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LEAFY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, RESIDUES 231-424; COMPND 5 SYNONYM: LEAFY; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*AP*TP*TP*TP*AP*AP*TP*CP*CP*AP COMPND 9 *AP*TP*GP*GP*TP*TP*AP*CP*AP*A)-3'; COMPND 10 CHAIN: W; COMPND 11 SYNONYM: DNA AG-I SITE; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 ORGAN: FLOWER; SOURCE 6 TISSUE: FLOWER MERISTEM; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTABLUE(DE3)PLYS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETM-11; SOURCE 12 OTHER_DETAILS: NONE; SOURCE 13 MOL_ID: 2; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 16 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 17 ORGANISM_TAXID: 3702 KEYWDS DNA-BINDING, POLYMORPHISM, TRANSCRIPTION, DEVELOPMENTAL PROTEIN KEYWDS 2 TRANSCRIPTION REGULATION, HOMEOTIC GENES, ACTIVATOR, DIFFERENTIATION KEYWDS 3 FLOWER DEVELOPMENT, FLOWERING, COILED COIL GENES EXPDTA X-RAY DIFFRACTION AUTHOR C.HAMES,D.PTCHELKINE,C.GRIMM,E.THEVENON,E.MOYROUD,F.GERARD, AUTHOR 2 J.L.MARTIEL,R.BENLLOCH,F.PARCY,C.W.MULLER REVDAT 4 13-DEC-23 2VY2 1 REMARK REVDAT 3 18-JAN-12 2VY2 1 COMPND KEYWDS JRNL REMARK REVDAT 3 2 1 VERSN FORMUL REVDAT 2 15-JAN-09 2VY2 1 VERSN REVDAT 1 23-SEP-08 2VY2 0 JRNL AUTH C.HAMES,D.PTCHELKINE,C.GRIMM,E.THEVENON,E.MOYROUD,F.GERARD, JRNL AUTH 2 J.L.MARTIEL,R.BENLLOCH,F.PARCY,C.W.MULLER JRNL TITL STRUCTURAL BASIS FOR LEAFY FLORAL SWITCH FUNCTION AND JRNL TITL 2 SIMILARITY WITH HELIX-TURN-HELIX PROTEINS. JRNL REF EMBO J. V. 27 2628 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18784751 JRNL DOI 10.1038/EMBOJ.2008.184 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9522 - 4.5837 0.99 2979 142 0.1918 0.2353 REMARK 3 2 4.5837 - 3.6455 1.00 2819 158 0.1854 0.2238 REMARK 3 3 3.6455 - 3.1868 1.00 2768 155 0.2267 0.2748 REMARK 3 4 3.1868 - 2.8964 1.00 2773 134 0.2636 0.2751 REMARK 3 5 2.8964 - 2.6893 1.00 2736 156 0.2547 0.2972 REMARK 3 6 2.6893 - 2.5311 1.00 2728 144 0.2506 0.2768 REMARK 3 7 2.5311 - 2.4045 1.00 2726 149 0.2688 0.2756 REMARK 3 8 2.4045 - 2.3000 1.00 2701 145 0.2876 0.3163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 49.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66890 REMARK 3 B22 (A**2) : -1.66890 REMARK 3 B33 (A**2) : -6.53700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2004 REMARK 3 ANGLE : 1.394 2838 REMARK 3 CHIRALITY : 0.071 298 REMARK 3 PLANARITY : 0.005 269 REMARK 3 DIHEDRAL : 21.327 785 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2VY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1290036898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 328932 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 2VY1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 400, 100 MM KCL, 10 MM CACL2, REMARK 280 50 MM HEPES (NAOH) PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.13333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.70000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.56667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 147.83333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 118.26667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 59.13333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 29.56667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 88.70000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 147.83333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, W REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 231 REMARK 465 GLY A 232 REMARK 465 THR A 233 REMARK 465 GLU A 234 REMARK 465 ARG A 235 REMARK 465 GLN A 236 REMARK 465 LEU A 400 REMARK 465 VAL A 401 REMARK 465 GLY A 402 REMARK 465 GLY A 403 REMARK 465 ILE A 404 REMARK 465 SER A 405 REMARK 465 CYS A 406 REMARK 465 THR A 407 REMARK 465 GLY A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 THR A 411 REMARK 465 SER A 412 REMARK 465 GLY A 413 REMARK 465 ARG A 414 REMARK 465 GLY A 415 REMARK 465 GLY A 416 REMARK 465 CYS A 417 REMARK 465 GLY A 418 REMARK 465 GLY A 419 REMARK 465 ASP A 420 REMARK 465 ASP A 421 REMARK 465 LEU A 422 REMARK 465 ARG A 423 REMARK 465 PHE A 424 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA W 1 C3' O3' C2' REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 381 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 296 OH TYR A 296 12554 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA W 5 C3' - C2' - C1' ANGL. DEV. = -8.6 DEGREES REMARK 500 DA W 5 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT W 12 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG W 14 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA W 18 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA W 18 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA W 19 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 323 81.57 -153.10 REMARK 500 TRP A 361 19.37 59.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VY1 RELATED DB: PDB REMARK 900 STRUCTURE OF LEAFY TRANSCRIPTION FACTOR FROM ARABIDOPSIS THALIANA REMARK 900 IN COMPLEX WITH DNA FROM AP1 PROMOTER REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN W HAS MICROHETEROGENEITY AT POSITIONS 1(DA/DT), REMARK 999 4(DT/DG), 5(DA/DT), 7(DT/DA), 11(DA/DT), 15(DT/DA) REMARK 999 17(DA/DT), AND 18(DC/DA). DBREF 2VY2 A 231 424 UNP Q00958 LFY_ARATH 231 424 DBREF 2VY2 W 1 20 PDB 2VY2 2VY2 1 20 SEQADV 2VY2 DT W 1 PDB 2VY2 DA 1 MICROHETEROGENEITY SEQADV 2VY2 DG W 4 PDB 2VY2 DT 4 MICROHETEROGENEITY SEQADV 2VY2 DT W 5 PDB 2VY2 DA 5 MICROHETEROGENEITY SEQADV 2VY2 DA W 7 PDB 2VY2 DT 7 MICROHETEROGENEITY SEQADV 2VY2 DT W 11 PDB 2VY2 DA 11 MICROHETEROGENEITY SEQADV 2VY2 DA W 15 PDB 2VY2 DT 15 MICROHETEROGENEITY SEQADV 2VY2 DT W 17 PDB 2VY2 DA 17 MICROHETEROGENEITY SEQADV 2VY2 DA W 18 PDB 2VY2 DC 18 MICROHETEROGENEITY SEQRES 1 A 194 LEU GLY THR GLU ARG GLN ARG GLU HIS PRO PHE ILE VAL SEQRES 2 A 194 THR GLU PRO GLY GLU VAL ALA ARG GLY LYS LYS ASN GLY SEQRES 3 A 194 LEU ASP TYR LEU PHE HIS LEU TYR GLU GLN CYS ARG GLU SEQRES 4 A 194 PHE LEU LEU GLN VAL GLN THR ILE ALA LYS ASP ARG GLY SEQRES 5 A 194 GLU LYS CYS PRO THR LYS VAL THR ASN GLN VAL PHE ARG SEQRES 6 A 194 TYR ALA LYS LYS SER GLY ALA SER TYR ILE ASN LYS PRO SEQRES 7 A 194 LYS MET ARG HIS TYR VAL HIS CYS TYR ALA LEU HIS CYS SEQRES 8 A 194 LEU ASP GLU GLU ALA SER ASN ALA LEU ARG ARG ALA PHE SEQRES 9 A 194 LYS GLU ARG GLY GLU ASN VAL GLY SER TRP ARG GLN ALA SEQRES 10 A 194 CYS TYR LYS PRO LEU VAL ASN ILE ALA CYS ARG HIS GLY SEQRES 11 A 194 TRP ASP ILE ASP ALA VAL PHE ASN ALA HIS PRO ARG LEU SEQRES 12 A 194 SER ILE TRP TYR VAL PRO THR LYS LEU ARG GLN LEU CYS SEQRES 13 A 194 HIS LEU GLU ARG ASN ASN ALA VAL ALA ALA ALA ALA ALA SEQRES 14 A 194 LEU VAL GLY GLY ILE SER CYS THR GLY SER SER THR SER SEQRES 15 A 194 GLY ARG GLY GLY CYS GLY GLY ASP ASP LEU ARG PHE SEQRES 1 W 20 DA DT DT DT DA DA DT DC DC DA DA DT DG SEQRES 2 W 20 DG DT DT DA DC DA DA FORMUL 3 HOH *46(H2 O) HELIX 1 1 GLY A 256 ARG A 281 1 26 HELIX 2 2 THR A 290 SER A 300 1 11 HELIX 3 3 ASN A 306 ARG A 337 1 32 HELIX 4 4 ASN A 340 ARG A 358 1 19 HELIX 5 5 ASP A 362 ALA A 369 1 8 HELIX 6 6 PRO A 379 ALA A 397 1 19 CRYST1 98.850 98.850 177.400 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010116 0.005841 0.000000 0.00000 SCALE2 0.000000 0.011681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005637 0.00000