data_2VZ4 # _entry.id 2VZ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VZ4 PDBE EBI-37028 WWPDB D_1290037028 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1NY9 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'ANTIBIOTIC BINDING DOMAIN OF A TIPA-CLASS MULTIDRUGRESISTANCE TRANSCRIPTIONAL REGULATOR' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VZ4 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-07-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Allan, M.G.' 1 'Stetefeld, J.' 2 'Schirmer, T.' 3 # _citation.id primary _citation.title 'Structure of the Transcriptionally Inactive Merr Domain Tipan in Complex with DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Allan, M.G.' 1 ? primary 'Newberry, K.J.' 2 ? primary 'Schuman, J.' 3 ? primary 'Brennan, R.G.' 4 ? primary 'Stetefeld, J.' 5 ? primary 'Grzesiek, S.' 6 ? primary 'Schirmer, T.' 7 ? # _cell.entry_id 2VZ4 _cell.length_a 45.850 _cell.length_b 67.467 _cell.length_c 73.129 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VZ4 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TIPA' 12053.574 1 ? ? 'DNA-BINDING DOMAIN TIPAN, RESIDUES 2-109' ? 2 polymer syn ;5'-D(*CP*TP*CP*CP*TP*CP*AP*CP*GP*TP *CP*AP*CP*GP*TP*GP*AP*GP*GP*TP*G)-3' ; 7971.114 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 TIPAL 2 'TIPA PROMOTER' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SYSVGQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDDPAADPRAHLR RQHELLSARIGKLQKMAAAVEQAMEARS ; ;SYSVGQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDDPAADPRAHLR RQHELLSARIGKLQKMAAAVEQAMEARS ; A ? 2 polydeoxyribonucleotide no no ;(DT)(DT)(DG)(DC)(DT)(DC)(DC)(DT)(DC)(DA)(DC)(DG)(DT)(DC)(DA)(DC)(DG)(DT)(DG)(DA) (DG)(DG)(DT)(DG)(DG)(DC) ; TTGCTCCTCACGTCACGTGAGGTGGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 SER n 1 4 VAL n 1 5 GLY n 1 6 GLN n 1 7 VAL n 1 8 ALA n 1 9 GLY n 1 10 PHE n 1 11 ALA n 1 12 GLY n 1 13 VAL n 1 14 THR n 1 15 VAL n 1 16 ARG n 1 17 THR n 1 18 LEU n 1 19 HIS n 1 20 HIS n 1 21 TYR n 1 22 ASP n 1 23 ASP n 1 24 ILE n 1 25 GLY n 1 26 LEU n 1 27 LEU n 1 28 VAL n 1 29 PRO n 1 30 SER n 1 31 GLU n 1 32 ARG n 1 33 SER n 1 34 HIS n 1 35 ALA n 1 36 GLY n 1 37 HIS n 1 38 ARG n 1 39 ARG n 1 40 TYR n 1 41 SER n 1 42 ASP n 1 43 ALA n 1 44 ASP n 1 45 LEU n 1 46 ASP n 1 47 ARG n 1 48 LEU n 1 49 GLN n 1 50 GLN n 1 51 ILE n 1 52 LEU n 1 53 PHE n 1 54 TYR n 1 55 ARG n 1 56 GLU n 1 57 LEU n 1 58 GLY n 1 59 PHE n 1 60 PRO n 1 61 LEU n 1 62 ASP n 1 63 GLU n 1 64 VAL n 1 65 ALA n 1 66 ALA n 1 67 LEU n 1 68 LEU n 1 69 ASP n 1 70 ASP n 1 71 PRO n 1 72 ALA n 1 73 ALA n 1 74 ASP n 1 75 PRO n 1 76 ARG n 1 77 ALA n 1 78 HIS n 1 79 LEU n 1 80 ARG n 1 81 ARG n 1 82 GLN n 1 83 HIS n 1 84 GLU n 1 85 LEU n 1 86 LEU n 1 87 SER n 1 88 ALA n 1 89 ARG n 1 90 ILE n 1 91 GLY n 1 92 LYS n 1 93 LEU n 1 94 GLN n 1 95 LYS n 1 96 MET n 1 97 ALA n 1 98 ALA n 1 99 ALA n 1 100 VAL n 1 101 GLU n 1 102 GLN n 1 103 ALA n 1 104 MET n 1 105 GLU n 1 106 ALA n 1 107 ARG n 1 108 SER n 2 1 DT n 2 2 DT n 2 3 DG n 2 4 DC n 2 5 DT n 2 6 DC n 2 7 DC n 2 8 DT n 2 9 DC n 2 10 DA n 2 11 DC n 2 12 DG n 2 13 DT n 2 14 DC n 2 15 DA n 2 16 DC n 2 17 DG n 2 18 DT n 2 19 DG n 2 20 DA n 2 21 DG n 2 22 DG n 2 23 DT n 2 24 DG n 2 25 DG n 2 26 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'STREPTOMYCES LIVIDANS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1916 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'MODIFIED PET22B' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'STREPTOMYCES LIVIDANS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1916 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP TIPA_STRLI 1 ? ? P0A4T9 ? 2 GB AAB27737 2 ? ? 408222 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VZ4 A 1 ? 108 ? P0A4T9 2 ? 109 ? 2 109 2 2 2VZ4 B 1 ? 26 ? 408222 63 ? 88 ? -14 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 2VZ4 DT B 5 ? GB 408222 DA 67 'SEE REMARK 999' -10 1 2 2VZ4 DT B 23 ? GB 408222 DA 85 'SEE REMARK 999' 10 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VZ4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_percent_sol 60 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;SITTING DROP CONTAINING 4 MICROLITERS PROTEIN-DNA SOLUTION PLUS 6 MICROLITERS RESERVOIR SOLUTION. PROTEIN-DNA SOLUTION: 500 MICROMOLAR (6 MILLIGRAMS/MILLILITER) PROTEIN, 275 MICROMOLAR DOUBLE-STRANDED DNA, 123 MILLIMOLAR SODIUM CHLORIDE, 16 MILLIMOLAR TRIS (TRIS(HYDROXYMETHYL)AMINOMETHANE), 8 MILLIMOLAR SODIUM CACODYLATE, 4 MILLIMOLAR MAGNESIUM CHLORIDE, 0.8 MILLIMOLAR EDTA (ETHYLENEDIAMINETETRAACETIC ACID), PH 8. RESERVOIR SOLUTION: 15% (WEIGHT/VOLUME) PEG-8K (POLY(ETHYLENE GLYCOL) WITH MOLECULAR MASS 8000 GRAMS/MOLE), 200 MILLIMOLAR MAGNESIUM CHLORIDE, 100 MILLIMOLAR TRIS (TRIS(HYDROXYMETHYL)AMINOMETHANE), PH 8.5. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-06-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9001 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 0.9001 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VZ4 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 72.74 _reflns.d_resolution_high 2.90 _reflns.number_obs 5321 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.06 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.50 _reflns_shell.pdbx_redundancy 6.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VZ4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 4922 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 95.9 _refine.ls_R_factor_obs 0.240 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.239 _refine.ls_R_factor_R_free 0.274 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.500 _refine.ls_number_reflns_R_free 230 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.923 _refine.correlation_coeff_Fo_to_Fc_free 0.872 _refine.B_iso_mean 47.66 _refine.aniso_B[1][1] 1.50000 _refine.aniso_B[2][2] -4.37000 _refine.aniso_B[3][3] 2.87000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY.' _refine.pdbx_starting_model 'PDB ENTRY 1R8D' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.777 _refine.pdbx_overall_ESU_R_Free 0.401 _refine.overall_SU_ML 0.423 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 56.040 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 794 _refine_hist.pdbx_number_atoms_nucleic_acid 428 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1222 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.021 ? 1245 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 712 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.337 2.391 ? 1771 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.912 3.000 ? 1730 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.115 5.000 ? 98 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.988 22.353 ? 34 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.313 15.000 ? 122 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.876 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.051 0.200 ? 203 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1084 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 207 'X-RAY DIFFRACTION' ? r_nbd_refined 0.201 0.200 ? 244 'X-RAY DIFFRACTION' ? r_nbd_other 0.176 0.200 ? 739 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.199 0.200 ? 545 'X-RAY DIFFRACTION' ? r_nbtor_other 0.084 0.200 ? 511 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.122 0.200 ? 18 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.152 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.374 0.200 ? 38 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.075 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.519 1.500 ? 530 'X-RAY DIFFRACTION' ? r_mcbond_other 0.342 1.500 ? 203 'X-RAY DIFFRACTION' ? r_mcangle_it 2.385 2.000 ? 771 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.359 3.000 ? 980 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.019 4.500 ? 1000 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 356 _refine_ls_shell.R_factor_R_work 0.3580 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.4150 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 13 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VZ4 _struct.title 'The N-terminal domain of MerR-like protein TipAL bound to promoter DNA' _struct.pdbx_descriptor 'HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TIPA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VZ4 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;TRANSCRIPTION, RESISTANCE, ANTIBIOTIC, DNA-BINDING, STREPTOMYCES, TRANSCRIPTION FACTOR, ALTERNATIVE INITIATION, TRANSCRIPTION REGULATION, DNA, MERR, DRUG, TIPAL, TIPAN, TIPAS, ACTIVATOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? GLY A 12 ? SER A 4 GLY A 13 1 ? 10 HELX_P HELX_P2 2 THR A 14 ? ILE A 24 ? THR A 15 ILE A 25 1 ? 11 HELX_P HELX_P3 3 SER A 41 ? LEU A 57 ? SER A 42 LEU A 58 1 ? 17 HELX_P HELX_P4 4 PRO A 60 ? ASP A 69 ? PRO A 61 ASP A 70 1 ? 10 HELX_P HELX_P5 5 ALA A 77 ? GLU A 105 ? ALA A 78 GLU A 106 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? B DC 4 O2 ? ? ? 1_555 B DG 24 N2 ? ? B DC -11 B DG 11 2_565 ? ? ? ? ? ? 'DC-DG PAIR' ? ? hydrog2 hydrog ? ? B DC 6 N3 ? ? ? 1_555 B DG 22 N1 ? ? B DC -9 B DG 9 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DC 6 N4 ? ? ? 1_555 B DG 22 O6 ? ? B DC -9 B DG 9 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DC 6 O2 ? ? ? 1_555 B DG 22 N2 ? ? B DC -9 B DG 9 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DC 7 N3 ? ? ? 1_555 B DG 21 N1 ? ? B DC -8 B DG 8 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DC 7 N4 ? ? ? 1_555 B DG 21 O6 ? ? B DC -8 B DG 8 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DC 7 O2 ? ? ? 1_555 B DG 21 N2 ? ? B DC -8 B DG 8 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DT 8 N3 ? ? ? 1_555 B DA 20 N1 ? ? B DT -7 B DA 7 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DT 8 O4 ? ? ? 1_555 B DA 20 N6 ? ? B DT -7 B DA 7 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DC 9 N4 ? ? ? 1_555 B DG 19 O6 ? ? B DC -6 B DG 6 2_565 ? ? ? ? ? ? 'DC-DG PAIR' ? ? hydrog11 hydrog ? ? B DA 10 N1 ? ? ? 1_555 B DT 18 N3 ? ? B DA -5 B DT 5 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DA 10 N6 ? ? ? 1_555 B DT 18 O4 ? ? B DA -5 B DT 5 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DC 11 N3 ? ? ? 1_555 B DG 17 N1 ? ? B DC -4 B DG 4 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DC 11 N4 ? ? ? 1_555 B DG 17 O6 ? ? B DC -4 B DG 4 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DC 11 O2 ? ? ? 1_555 B DG 17 N2 ? ? B DC -4 B DG 4 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DG 12 N1 ? ? ? 1_555 B DC 16 N3 ? ? B DG -3 B DC 3 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DG 12 N2 ? ? ? 1_555 B DC 16 O2 ? ? B DG -3 B DC 3 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DG 12 O6 ? ? ? 1_555 B DC 16 N4 ? ? B DG -3 B DC 3 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DT 13 N3 ? ? ? 1_555 B DA 15 N1 ? ? B DT -2 B DA 2 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DT 13 O4 ? ? ? 1_555 B DA 15 N6 ? ? B DT -2 B DA 2 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DA 15 N1 ? ? ? 1_555 B DT 13 N3 ? ? B DA 2 B DT -2 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DA 15 N6 ? ? ? 1_555 B DT 13 O4 ? ? B DA 2 B DT -2 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DC 16 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 3 B DG -3 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DC 16 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 3 B DG -3 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DC 16 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 3 B DG -3 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DG 17 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 4 B DC -4 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DG 17 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 4 B DC -4 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B DG 17 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 4 B DC -4 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B DT 18 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 5 B DA -5 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B DT 18 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 5 B DA -5 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B DG 19 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 6 B DC -6 2_565 ? ? ? ? ? ? 'DG-DC PAIR' ? ? hydrog32 hydrog ? ? B DA 20 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 7 B DT -7 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? B DA 20 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 7 B DT -7 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? B DG 21 N1 ? ? ? 1_555 B DC 7 N3 ? ? B DG 8 B DC -8 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? B DG 21 N2 ? ? ? 1_555 B DC 7 O2 ? ? B DG 8 B DC -8 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? B DG 21 O6 ? ? ? 1_555 B DC 7 N4 ? ? B DG 8 B DC -8 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? B DG 22 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 9 B DC -9 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? B DG 22 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 9 B DC -9 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? B DG 22 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 9 B DC -9 2_565 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? B DG 24 N2 ? ? ? 1_555 B DC 4 O2 ? ? B DG 11 B DC -11 2_565 ? ? ? ? ? ? 'DG-DC PAIR' ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 31 ? ARG A 32 ? GLU A 32 ARG A 33 AA 2 ARG A 38 ? ARG A 39 ? ARG A 39 ARG A 40 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id GLU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 31 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 32 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id ARG _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 39 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 40 # _database_PDB_matrix.entry_id 2VZ4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VZ4 _atom_sites.fract_transf_matrix[1][1] 0.021810 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014822 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013674 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 TYR 2 3 3 TYR TYR A . n A 1 3 SER 3 4 4 SER SER A . n A 1 4 VAL 4 5 5 VAL VAL A . n A 1 5 GLY 5 6 6 GLY GLY A . n A 1 6 GLN 6 7 7 GLN GLN A . n A 1 7 VAL 7 8 8 VAL VAL A . n A 1 8 ALA 8 9 9 ALA ALA A . n A 1 9 GLY 9 10 10 GLY GLY A . n A 1 10 PHE 10 11 11 PHE PHE A . n A 1 11 ALA 11 12 12 ALA ALA A . n A 1 12 GLY 12 13 13 GLY GLY A . n A 1 13 VAL 13 14 14 VAL VAL A . n A 1 14 THR 14 15 15 THR THR A . n A 1 15 VAL 15 16 16 VAL VAL A . n A 1 16 ARG 16 17 17 ARG ARG A . n A 1 17 THR 17 18 18 THR THR A . n A 1 18 LEU 18 19 19 LEU LEU A . n A 1 19 HIS 19 20 20 HIS HIS A . n A 1 20 HIS 20 21 21 HIS HIS A . n A 1 21 TYR 21 22 22 TYR TYR A . n A 1 22 ASP 22 23 23 ASP ASP A . n A 1 23 ASP 23 24 24 ASP ASP A . n A 1 24 ILE 24 25 25 ILE ILE A . n A 1 25 GLY 25 26 26 GLY GLY A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 LEU 27 28 28 LEU LEU A . n A 1 28 VAL 28 29 29 VAL VAL A . n A 1 29 PRO 29 30 30 PRO PRO A . n A 1 30 SER 30 31 31 SER SER A . n A 1 31 GLU 31 32 32 GLU GLU A . n A 1 32 ARG 32 33 33 ARG ARG A . n A 1 33 SER 33 34 34 SER SER A . n A 1 34 HIS 34 35 35 HIS HIS A . n A 1 35 ALA 35 36 36 ALA ALA A . n A 1 36 GLY 36 37 37 GLY GLY A . n A 1 37 HIS 37 38 38 HIS HIS A . n A 1 38 ARG 38 39 39 ARG ARG A . n A 1 39 ARG 39 40 40 ARG ARG A . n A 1 40 TYR 40 41 41 TYR TYR A . n A 1 41 SER 41 42 42 SER SER A . n A 1 42 ASP 42 43 43 ASP ASP A . n A 1 43 ALA 43 44 44 ALA ALA A . n A 1 44 ASP 44 45 45 ASP ASP A . n A 1 45 LEU 45 46 46 LEU LEU A . n A 1 46 ASP 46 47 47 ASP ASP A . n A 1 47 ARG 47 48 48 ARG ARG A . n A 1 48 LEU 48 49 49 LEU LEU A . n A 1 49 GLN 49 50 50 GLN GLN A . n A 1 50 GLN 50 51 51 GLN GLN A . n A 1 51 ILE 51 52 52 ILE ILE A . n A 1 52 LEU 52 53 53 LEU LEU A . n A 1 53 PHE 53 54 54 PHE PHE A . n A 1 54 TYR 54 55 55 TYR TYR A . n A 1 55 ARG 55 56 56 ARG ARG A . n A 1 56 GLU 56 57 57 GLU GLU A . n A 1 57 LEU 57 58 58 LEU LEU A . n A 1 58 GLY 58 59 59 GLY GLY A . n A 1 59 PHE 59 60 60 PHE PHE A . n A 1 60 PRO 60 61 61 PRO PRO A . n A 1 61 LEU 61 62 62 LEU LEU A . n A 1 62 ASP 62 63 63 ASP ASP A . n A 1 63 GLU 63 64 64 GLU GLU A . n A 1 64 VAL 64 65 65 VAL VAL A . n A 1 65 ALA 65 66 66 ALA ALA A . n A 1 66 ALA 66 67 67 ALA ALA A . n A 1 67 LEU 67 68 68 LEU LEU A . n A 1 68 LEU 68 69 69 LEU LEU A . n A 1 69 ASP 69 70 70 ASP ASP A . n A 1 70 ASP 70 71 71 ASP ASP A . n A 1 71 PRO 71 72 ? ? ? A . n A 1 72 ALA 72 73 ? ? ? A . n A 1 73 ALA 73 74 ? ? ? A . n A 1 74 ASP 74 75 ? ? ? A . n A 1 75 PRO 75 76 ? ? ? A . n A 1 76 ARG 76 77 77 ARG ARG A . n A 1 77 ALA 77 78 78 ALA ALA A . n A 1 78 HIS 78 79 79 HIS HIS A . n A 1 79 LEU 79 80 80 LEU LEU A . n A 1 80 ARG 80 81 81 ARG ARG A . n A 1 81 ARG 81 82 82 ARG ARG A . n A 1 82 GLN 82 83 83 GLN GLN A . n A 1 83 HIS 83 84 84 HIS HIS A . n A 1 84 GLU 84 85 85 GLU GLU A . n A 1 85 LEU 85 86 86 LEU LEU A . n A 1 86 LEU 86 87 87 LEU LEU A . n A 1 87 SER 87 88 88 SER SER A . n A 1 88 ALA 88 89 89 ALA ALA A . n A 1 89 ARG 89 90 90 ARG ARG A . n A 1 90 ILE 90 91 91 ILE ILE A . n A 1 91 GLY 91 92 92 GLY GLY A . n A 1 92 LYS 92 93 93 LYS LYS A . n A 1 93 LEU 93 94 94 LEU LEU A . n A 1 94 GLN 94 95 95 GLN GLN A . n A 1 95 LYS 95 96 96 LYS LYS A . n A 1 96 MET 96 97 97 MET MET A . n A 1 97 ALA 97 98 98 ALA ALA A . n A 1 98 ALA 98 99 99 ALA ALA A . n A 1 99 ALA 99 100 100 ALA ALA A . n A 1 100 VAL 100 101 101 VAL VAL A . n A 1 101 GLU 101 102 102 GLU GLU A . n A 1 102 GLN 102 103 103 GLN GLN A . n A 1 103 ALA 103 104 104 ALA ALA A . n A 1 104 MET 104 105 105 MET MET A . n A 1 105 GLU 105 106 106 GLU GLU A . n A 1 106 ALA 106 107 ? ? ? A . n A 1 107 ARG 107 108 ? ? ? A . n A 1 108 SER 108 109 ? ? ? A . n B 2 1 DT 1 -14 ? ? ? B . n B 2 2 DT 2 -13 ? ? ? B . n B 2 3 DG 3 -12 ? ? ? B . n B 2 4 DC 4 -11 -11 DC DC B . n B 2 5 DT 5 -10 -10 DT DT B . n B 2 6 DC 6 -9 -9 DC DC B . n B 2 7 DC 7 -8 -8 DC DC B . n B 2 8 DT 8 -7 -7 DT DT B . n B 2 9 DC 9 -6 -6 DC DC B . n B 2 10 DA 10 -5 -5 DA DA B . n B 2 11 DC 11 -4 -4 DC DC B . n B 2 12 DG 12 -3 -3 DG DG B . n B 2 13 DT 13 -2 -2 DT DT B . n B 2 14 DC 14 1 1 DC DC B . n B 2 15 DA 15 2 2 DA DA B . n B 2 16 DC 16 3 3 DC DC B . n B 2 17 DG 17 4 4 DG DG B . n B 2 18 DT 18 5 5 DT DT B . n B 2 19 DG 19 6 6 DG DG B . n B 2 20 DA 20 7 7 DA DA B . n B 2 21 DG 21 8 8 DG DG B . n B 2 22 DG 22 9 9 DG DG B . n B 2 23 DT 23 10 10 DT DT B . n B 2 24 DG 24 11 11 DG DG B . n B 2 25 DG 25 12 ? ? ? B . n B 2 26 DC 26 13 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6320 ? 1 MORE -57.41 ? 1 'SSA (A^2)' 17870 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 67.4670000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-17 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Experimental preparation' 6 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_seq_map_depositor_info 5 3 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 3 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -2.3614 16.1282 -22.1389 -0.1605 -0.2264 0.0883 -0.0967 0.0309 -0.0553 4.5435 10.6024 8.1752 -0.2020 2.3173 -2.8074 0.2364 -0.0725 -0.1755 0.3104 -0.0824 0.2870 0.5090 -0.5064 -0.1541 'X-RAY DIFFRACTION' 2 ? refined -4.6635 34.3850 -40.2169 -0.1271 0.0360 0.0274 0.0135 -0.0256 0.0266 9.4978 9.2033 1.2258 3.1998 -0.4585 0.2660 0.5280 -0.6104 0.1876 0.1041 -0.6046 0.4823 0.0742 -0.1395 0.0766 'X-RAY DIFFRACTION' 3 ? refined 7.2860 18.6586 -7.7848 0.5467 -0.0703 0.1681 -0.1269 -0.2977 0.2134 5.2678 14.5735 5.8529 1.4491 3.2124 0.3431 -0.0416 -0.7602 -0.1438 1.4002 -0.0204 -0.3927 -0.1113 0.5620 0.0620 'X-RAY DIFFRACTION' 4 ? refined -7.8658 48.3020 -8.0472 0.5439 0.1859 0.3402 -0.0573 0.3816 -0.1964 1.5232 3.6188 3.3314 2.0451 1.6340 1.0201 -0.1944 -0.8847 0.6753 1.8058 -0.3093 1.1840 0.3043 -0.6806 0.5037 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 2 ? ? A 71 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 77 ? ? A 106 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B -11 ? ? B -2 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 1 ? ? B 11 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2VZ4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;TIPAN IS THE N-TERMINAL DOMAIN OF TIPAL. RESIDUE M1 WAS CLEAVED DURING EXPRESSION. THE SEQUENCE IS DESCRIBED IN HOLMES ET AL. (1993) EMBO J, VOL. 12, P. 3183. THE CRYSTAL CONTAINED DOUBLE-STRANDED DNA WITH SEQUENCES TTGCACCTCACGTCACGTGAGGAGGC (PLUS STRAND) AND AGCCTCCTCACGTGACGTGAGGTGCA (MINUS STRAND). BOTH STRANDS WERE MODELED AS CHAIN B WITH SEQUENCE CTCCTCACGTCACGTGAGGTG. ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC -11 ? ? "C1'" B DC -11 ? ? N1 B DC -11 ? ? 110.42 108.30 2.12 0.30 N 2 1 "O4'" B DT -10 ? ? "C1'" B DT -10 ? ? N1 B DT -10 ? ? 111.57 108.30 3.27 0.30 N 3 1 "O4'" B DC -9 ? ? "C1'" B DC -9 ? ? N1 B DC -9 ? ? 111.74 108.30 3.44 0.30 N 4 1 "O4'" B DC -8 ? ? "C1'" B DC -8 ? ? N1 B DC -8 ? ? 111.28 108.30 2.98 0.30 N 5 1 "O4'" B DC -6 ? ? "C1'" B DC -6 ? ? N1 B DC -6 ? ? 112.43 108.30 4.13 0.30 N 6 1 "C3'" B DA -5 ? ? "C2'" B DA -5 ? ? "C1'" B DA -5 ? ? 97.43 102.40 -4.97 0.80 N 7 1 "O4'" B DA -5 ? ? "C1'" B DA -5 ? ? N9 B DA -5 ? ? 111.81 108.30 3.51 0.30 N 8 1 "O4'" B DC -4 ? ? "C1'" B DC -4 ? ? N1 B DC -4 ? ? 111.03 108.30 2.73 0.30 N 9 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? "C2'" B DC 1 ? ? 100.44 105.90 -5.46 0.80 N 10 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 110.16 108.30 1.86 0.30 N 11 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? N9 B DG 6 ? ? 116.40 108.30 8.10 0.30 N 12 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 114.63 108.30 6.33 0.30 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 72 ? A PRO 71 2 1 Y 1 A ALA 73 ? A ALA 72 3 1 Y 1 A ALA 74 ? A ALA 73 4 1 Y 1 A ASP 75 ? A ASP 74 5 1 Y 1 A PRO 76 ? A PRO 75 6 1 Y 1 A ALA 107 ? A ALA 106 7 1 Y 1 A ARG 108 ? A ARG 107 8 1 Y 1 A SER 109 ? A SER 108 9 1 Y 1 B DT -14 ? B DT 1 10 1 Y 1 B DT -13 ? B DT 2 11 1 Y 1 B DG -12 ? B DG 3 12 1 Y 1 B DG 12 ? B DG 25 13 1 Y 1 B DC 13 ? B DC 26 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2VZ4 'double helix' 2VZ4 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 4 1_555 B DG 24 2_565 1.202 0.717 -1.020 18.320 10.272 13.364 1 B_DC-11:DG11_B B -11 ? B 11 ? ? 1 1 B DC 6 1_555 B DG 22 2_565 -0.004 0.279 0.131 -7.287 -14.701 4.334 2 B_DC-9:DG9_B B -9 ? B 9 ? 19 1 1 B DC 7 1_555 B DG 21 2_565 0.111 -0.131 0.348 -22.474 -14.281 3.365 3 B_DC-8:DG8_B B -8 ? B 8 ? 19 1 1 B DT 8 1_555 B DA 20 2_565 0.511 -0.180 0.138 -6.269 -20.865 -0.758 4 B_DT-7:DA7_B B -7 ? B 7 ? 20 1 1 B DC 9 1_555 B DG 19 2_565 1.129 -0.047 -0.429 -3.499 -10.477 -17.225 5 B_DC-6:DG6_B B -6 ? B 6 ? ? 1 1 B DA 10 1_555 B DT 18 2_565 0.008 0.011 -0.156 -2.788 -8.448 1.135 6 B_DA-5:DT5_B B -5 ? B 5 ? 20 1 1 B DC 11 1_555 B DG 17 2_565 0.288 -0.206 -0.038 5.441 -12.440 -2.516 7 B_DC-4:DG4_B B -4 ? B 4 ? 19 1 1 B DG 12 1_555 B DC 16 2_565 -0.560 -0.037 -0.136 -9.930 -17.197 0.519 8 B_DG-3:DC3_B B -3 ? B 3 ? 19 1 1 B DT 13 1_555 B DA 15 2_565 0.343 -0.207 -0.009 -3.216 -4.838 3.114 9 B_DT-2:DA2_B B -2 ? B 2 ? 20 1 1 B DA 15 1_555 B DT 13 2_565 -0.343 -0.207 -0.009 3.216 -4.838 3.114 10 B_DA2:DT-2_B B 2 ? B -2 ? 20 1 1 B DC 16 1_555 B DG 12 2_565 0.560 -0.037 -0.136 9.930 -17.197 0.519 11 B_DC3:DG-3_B B 3 ? B -3 ? 19 1 1 B DG 17 1_555 B DC 11 2_565 -0.288 -0.206 -0.038 -5.441 -12.440 -2.516 12 B_DG4:DC-4_B B 4 ? B -4 ? 19 1 1 B DT 18 1_555 B DA 10 2_565 -0.008 0.011 -0.156 2.788 -8.448 1.135 13 B_DT5:DA-5_B B 5 ? B -5 ? 20 1 1 B DG 19 1_555 B DC 9 2_565 -1.129 -0.047 -0.429 3.499 -10.477 -17.225 14 B_DG6:DC-6_B B 6 ? B -6 ? ? 1 1 B DA 20 1_555 B DT 8 2_565 -0.511 -0.180 0.138 6.269 -20.865 -0.758 15 B_DA7:DT-7_B B 7 ? B -7 ? 20 1 1 B DG 21 1_555 B DC 7 2_565 -0.111 -0.131 0.348 22.474 -14.281 3.365 16 B_DG8:DC-8_B B 8 ? B -8 ? 19 1 1 B DG 22 1_555 B DC 6 2_565 0.004 0.279 0.131 7.287 -14.701 4.334 17 B_DG9:DC-9_B B 9 ? B -9 ? 19 1 1 B DG 24 1_555 B DC 4 2_565 -1.202 0.717 -1.020 -18.320 10.272 13.364 18 B_DG11:DC-11_B B 11 ? B -11 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 4 1_555 B DG 24 2_565 B DC 6 1_555 B DG 22 2_565 1.809 -1.821 6.806 8.779 24.350 60.898 -3.719 -0.932 5.969 22.947 -8.273 65.681 1 BB_DC-11DC-9:DG9DG11_BB B -11 ? B 11 ? B -9 ? B 9 ? 1 B DC 6 1_555 B DG 22 2_565 B DC 7 1_555 B DG 21 2_565 0.287 -1.399 3.568 2.675 8.141 30.600 -4.113 -0.014 3.115 15.058 -4.947 31.749 2 BB_DC-9DC-8:DG8DG9_BB B -9 ? B 9 ? B -8 ? B 8 ? 1 B DC 7 1_555 B DG 21 2_565 B DT 8 1_555 B DA 20 2_565 -0.644 0.159 2.880 2.039 15.137 30.509 -1.877 1.389 2.620 26.763 -3.606 34.038 3 BB_DC-8DT-7:DA7DG8_BB B -8 ? B 8 ? B -7 ? B 7 ? 1 B DT 8 1_555 B DA 20 2_565 B DC 9 1_555 B DG 19 2_565 -0.678 -0.556 3.300 0.402 0.977 41.534 -0.888 0.999 3.281 1.377 -0.566 41.547 4 BB_DT-7DC-6:DG6DA7_BB B -7 ? B 7 ? B -6 ? B 6 ? 1 B DC 9 1_555 B DG 19 2_565 B DA 10 1_555 B DT 18 2_565 1.238 -0.448 3.360 1.984 6.205 20.857 -3.668 -2.472 3.196 16.624 -5.315 21.840 5 BB_DC-6DA-5:DT5DG6_BB B -6 ? B 6 ? B -5 ? B 5 ? 1 B DA 10 1_555 B DT 18 2_565 B DC 11 1_555 B DG 17 2_565 -0.595 -0.047 3.099 -0.663 -0.490 34.368 -0.007 0.909 3.110 -0.829 1.121 34.377 6 BB_DA-5DC-4:DG4DT5_BB B -5 ? B 5 ? B -4 ? B 4 ? 1 B DC 11 1_555 B DG 17 2_565 B DG 12 1_555 B DC 16 2_565 0.542 -0.870 3.618 -2.109 7.233 39.556 -2.150 -1.045 3.382 10.571 3.082 40.239 7 BB_DC-4DG-3:DC3DG4_BB B -4 ? B 4 ? B -3 ? B 3 ? 1 B DG 12 1_555 B DC 16 2_565 B DT 13 1_555 B DA 15 2_565 -0.919 -0.677 3.099 -1.059 -0.669 25.905 -1.332 1.767 3.149 -1.491 2.361 25.935 8 BB_DG-3DT-2:DA2DC3_BB B -3 ? B 3 ? B -2 ? B 2 ? 1 B DT 13 1_555 B DA 15 2_565 B DA 15 1_555 B DT 13 2_565 0.000 1.775 6.434 0.000 23.893 63.219 -0.333 0.000 6.664 21.983 0.000 67.144 9 BB_DT-2DA2:DT-2DA2_BB B -2 ? B 2 ? B 2 ? B -2 ? 1 B DA 15 1_555 B DT 13 2_565 B DC 16 1_555 B DG 12 2_565 0.919 -0.677 3.099 1.059 -0.669 25.905 -1.332 -1.767 3.149 -1.491 -2.361 25.935 10 BB_DA2DC3:DG-3DT-2_BB B 2 ? B -2 ? B 3 ? B -3 ? 1 B DC 16 1_555 B DG 12 2_565 B DG 17 1_555 B DC 11 2_565 -0.542 -0.870 3.618 2.109 7.233 39.556 -2.150 1.045 3.382 10.571 -3.082 40.239 11 BB_DC3DG4:DC-4DG-3_BB B 3 ? B -3 ? B 4 ? B -4 ? 1 B DG 17 1_555 B DC 11 2_565 B DT 18 1_555 B DA 10 2_565 0.595 -0.047 3.099 0.663 -0.490 34.368 -0.007 -0.909 3.110 -0.829 -1.121 34.377 12 BB_DG4DT5:DA-5DC-4_BB B 4 ? B -4 ? B 5 ? B -5 ? 1 B DT 18 1_555 B DA 10 2_565 B DG 19 1_555 B DC 9 2_565 -1.238 -0.448 3.360 -1.984 6.205 20.857 -3.668 2.472 3.196 16.624 5.315 21.840 13 BB_DT5DG6:DC-6DA-5_BB B 5 ? B -5 ? B 6 ? B -6 ? 1 B DG 19 1_555 B DC 9 2_565 B DA 20 1_555 B DT 8 2_565 0.678 -0.556 3.300 -0.402 0.977 41.534 -0.888 -0.999 3.281 1.377 0.566 41.547 14 BB_DG6DA7:DT-7DC-6_BB B 6 ? B -6 ? B 7 ? B -7 ? 1 B DA 20 1_555 B DT 8 2_565 B DG 21 1_555 B DC 7 2_565 0.644 0.159 2.880 -2.039 15.137 30.509 -1.877 -1.389 2.620 26.763 3.606 34.038 15 BB_DA7DG8:DC-8DT-7_BB B 7 ? B -7 ? B 8 ? B -8 ? 1 B DG 21 1_555 B DC 7 2_565 B DG 22 1_555 B DC 6 2_565 -0.287 -1.399 3.568 -2.675 8.141 30.600 -4.113 0.014 3.115 15.058 4.947 31.749 16 BB_DG8DG9:DC-9DC-8_BB B 8 ? B -8 ? B 9 ? B -9 ? 1 B DG 22 1_555 B DC 6 2_565 B DG 24 1_555 B DC 4 2_565 -1.809 -1.821 6.806 -8.779 24.350 60.898 -3.719 0.932 5.969 22.947 8.273 65.681 17 BB_DG9DG11:DC-11DC-9_BB B 9 ? B -9 ? B 11 ? B -11 ? #