HEADER OXIDOREDUCTASE 01-AUG-08 2VZJ OBSLTE 07-AUG-13 2VZJ 4LTN TITLE CRYSTAL STRUCTURES OF NADH:FMN OXIDOREDUCTASE (EMOB)-FMN, TITLE 2 NADH COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH-DEPENDENT FMN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EDTA-DEGRADING BACTERIUM BNC1; SOURCE 3 ORGANISM_TAXID: 85561; SOURCE 4 GENE: EMOB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.NISSEN,B.YOUN,B.D.KNOWLES,J.W.BALLINGER,S.Y.JUN,S.M.BELCHIK, AUTHOR 2 L.XUN,C.KANG REVDAT 4 07-AUG-13 2VZJ 1 OBSLTE REVDAT 3 24-FEB-09 2VZJ 1 VERSN REVDAT 2 21-OCT-08 2VZJ 1 AUTHOR JRNL REVDAT 1 12-AUG-08 2VZJ 0 JRNL AUTH M.S.NISSEN,B.YOUN,B.D.KNOWLES,J.W.BALLINGER,S.Y.JUN, JRNL AUTH 2 S.M.BELCHIK,L.XUN,C.KANG JRNL TITL CRYSTAL STRUCTURES OF NADH:FMN OXIDOREDUCTASE (EMOB) AT JRNL TITL 2 DIFFERENT STAGES OF CATALYSIS. JRNL REF J.BIOL.CHEM. V. 283 28710 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18701448 JRNL DOI 10.1074/JBC.M804535200 REMARK 2 REMARK 2 RESOLUTION. 2.5 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.5 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96 REMARK 3 NUMBER OF REFLECTIONS : 13264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 3.82 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2VZJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-08. REMARK 100 THE PDBE ID CODE IS EBI-37098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 233200 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.50 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.2 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.2 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.3 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.23667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.47333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.23667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.47333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.23667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.47333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.23667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 86.47333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 101.18000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 101.18000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2077 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2083 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 148 REMARK 465 VAL A 149 REMARK 465 VAL A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 152 REMARK 465 THR A 194 REMARK 465 ARG A 195 REMARK 465 ALA A 196 REMARK 465 ALA A 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 145 CB OG REMARK 470 GLN A 146 CB CG CD OE1 NE2 REMARK 470 PHE A 147 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 191 CB CG CD1 CD2 REMARK 470 ASP A 192 CB CG OD1 OD2 REMARK 470 ALA A 193 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 13 CA - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 38 CB - CG - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ILE A 43 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 LYS A 59 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 THR A 85 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 VAL A 133 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 HIS A 135 CB - CG - ND1 ANGL. DEV. = 7.9 DEGREES REMARK 500 LEU A 142 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 LEU A 142 CD1 - CG - CD2 ANGL. DEV. = -28.4 DEGREES REMARK 500 LEU A 154 CA - C - N ANGL. DEV. = -19.6 DEGREES REMARK 500 ARG A 172 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 SER A 176 CA - C - N ANGL. DEV. = -19.7 DEGREES REMARK 500 SER A 176 O - C - N ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 96 160.28 -46.25 REMARK 500 VAL A 137 -167.50 -77.40 REMARK 500 ALA A 155 -27.19 160.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VZH RELATED DB: PDB REMARK 900 STRUCTURES OF NADH:FMN OXIDOREDUCTASE (EMOB)- REMARK 900 FMN COMPLEX REMARK 900 RELATED ID: 2VZF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF NADH:FMN OXIDOREDUCTASE REMARK 900 (EMOB)-APO FORM DBREF 2VZJ A 1 197 UNP Q9F9T2 Q9F9T2_9PROT 1 197 SEQRES 1 A 197 MET THR TYR SER ILE VAL ALA ILE SER GLY SER PRO SER SEQRES 2 A 197 ARG ASN SER THR THR ALA LYS LEU ALA GLU TYR ALA LEU SEQRES 3 A 197 ALA HIS VAL LEU ALA ARG SER ASP SER GLN GLY ARG HIS SEQRES 4 A 197 ILE HIS VAL ILE ASP LEU ASP PRO LYS ALA LEU LEU ARG SEQRES 5 A 197 GLY ASP LEU SER ASN ALA LYS LEU LYS GLU ALA VAL ASP SEQRES 6 A 197 ALA THR CYS ASN ALA ASP GLY LEU ILE VAL ALA THR PRO SEQRES 7 A 197 ILE TYR LYS ALA SER TYR THR GLY LEU LEU LYS ALA PHE SEQRES 8 A 197 LEU ASP ILE LEU PRO GLN PHE ALA LEU ALA GLY LYS ALA SEQRES 9 A 197 ALA LEU PRO LEU ALA THR GLY GLY SER PRO ALA HIS VAL SEQRES 10 A 197 LEU ALA LEU ASP TYR GLY LEU ARG PRO VAL LEU HIS SER SEQRES 11 A 197 MET GLY VAL ARG HIS VAL VAL GLN SER PHE PHE LEU VAL SEQRES 12 A 197 GLN SER GLN PHE SER VAL VAL ASP GLY LYS LEU ALA VAL SEQRES 13 A 197 GLU ASP ASP VAL ALA SER GLN LEU ASN ASN ALA ILE ASP SEQRES 14 A 197 HIS PHE ARG LEU SER LEU SER SER GLU PRO SER THR ARG SEQRES 15 A 197 HIS LEU GLY HIS PRO ARG PRO SER LEU ASP ALA THR ARG SEQRES 16 A 197 ALA ALA HET FMN A 500 31 HET NAD A 501 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM FMN FLAVIN MONONUCLEOTIDE FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 HOH *128(H2 O1) HELIX 1 1 SER A 16 SER A 33 1 18 HELIX 2 2 ILE A 43 LEU A 45 5 3 HELIX 3 3 ASP A 46 GLY A 53 1 8 HELIX 4 4 ASN A 57 ALA A 70 1 14 HELIX 5 5 THR A 85 ASP A 93 1 9 HELIX 6 6 SER A 113 VAL A 117 5 5 HELIX 7 7 LEU A 118 GLY A 123 1 6 HELIX 8 8 GLY A 123 SER A 130 1 8 HELIX 9 9 GLU A 157 SER A 174 1 18 HELIX 10 10 GLU A 178 LEU A 184 5 7 SHEET 1 AA 5 SER A 35 HIS A 41 0 SHEET 2 AA 5 TYR A 3 SER A 9 1 O TYR A 3 N GLN A 36 SHEET 3 AA 5 GLY A 72 PRO A 78 1 O GLY A 72 N VAL A 6 SHEET 4 AA 5 ALA A 104 GLY A 111 1 O ALA A 104 N LEU A 73 SHEET 5 AA 5 HIS A 135 VAL A 136 1 O HIS A 135 N ALA A 105 SHEET 1 AB 5 SER A 35 HIS A 41 0 SHEET 2 AB 5 TYR A 3 SER A 9 1 O TYR A 3 N GLN A 36 SHEET 3 AB 5 GLY A 72 PRO A 78 1 O GLY A 72 N VAL A 6 SHEET 4 AB 5 ALA A 104 GLY A 111 1 O ALA A 104 N LEU A 73 SHEET 5 AB 5 PHE A 140 VAL A 143 1 O PHE A 140 N ALA A 109 SITE 1 AC1 20 SER A 11 SER A 13 SER A 16 THR A 17 SITE 2 AC1 20 THR A 18 PRO A 78 ILE A 79 TYR A 80 SITE 3 AC1 20 LYS A 81 ALA A 82 ASP A 93 THR A 110 SITE 4 AC1 20 GLY A 111 GLY A 112 SER A 113 HIS A 116 SITE 5 AC1 20 GLN A 144 NAD A 501 HOH A2064 HOH A2126 SITE 1 AC2 11 SER A 13 ARG A 14 ASN A 15 LYS A 81 SITE 2 AC2 11 GLN A 97 GLY A 112 GLN A 144 FMN A 500 SITE 3 AC2 11 HOH A2004 HOH A2009 HOH A2126 CRYST1 101.180 101.180 129.710 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009883 0.005706 0.000000 0.00000 SCALE2 0.000000 0.011412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007710 0.00000 CONECT 1386 1387 1403 CONECT 1387 1386 1388 1389 CONECT 1388 1387 CONECT 1389 1387 1390 CONECT 1390 1389 1391 1392 CONECT 1391 1390 CONECT 1392 1390 1393 1403 CONECT 1393 1392 1394 CONECT 1394 1393 1395 1401 CONECT 1395 1394 1396 CONECT 1396 1395 1397 1398 CONECT 1397 1396 CONECT 1398 1396 1399 1400 CONECT 1399 1398 CONECT 1400 1398 1401 CONECT 1401 1394 1400 1402 CONECT 1402 1401 1403 1404 CONECT 1403 1386 1392 1402 CONECT 1404 1402 1405 CONECT 1405 1404 1406 1407 CONECT 1406 1405 CONECT 1407 1405 1408 1409 CONECT 1408 1407 CONECT 1409 1407 1410 1411 CONECT 1410 1409 CONECT 1411 1409 1412 CONECT 1412 1411 1413 CONECT 1413 1412 1414 1415 1416 CONECT 1414 1413 CONECT 1415 1413 CONECT 1416 1413 CONECT 1417 1418 1419 1420 1439 CONECT 1418 1417 CONECT 1419 1417 CONECT 1420 1417 1421 CONECT 1421 1420 1422 CONECT 1422 1421 1423 1424 CONECT 1423 1422 1428 CONECT 1424 1422 1425 1426 CONECT 1425 1424 CONECT 1426 1424 1427 1428 CONECT 1427 1426 CONECT 1428 1423 1426 1429 CONECT 1429 1428 1430 1438 CONECT 1430 1429 1431 CONECT 1431 1430 1432 CONECT 1432 1431 1433 1438 CONECT 1433 1432 1434 1435 CONECT 1434 1433 CONECT 1435 1433 1436 CONECT 1436 1435 1437 CONECT 1437 1436 1438 CONECT 1438 1429 1432 1437 CONECT 1439 1417 1440 CONECT 1440 1439 1441 1442 1443 CONECT 1441 1440 CONECT 1442 1440 CONECT 1443 1440 1444 CONECT 1444 1443 1445 CONECT 1445 1444 1446 1447 CONECT 1446 1445 1451 CONECT 1447 1445 1448 1449 CONECT 1448 1447 CONECT 1449 1447 1450 1451 CONECT 1450 1449 CONECT 1451 1446 1449 1452 CONECT 1452 1451 1453 1460 CONECT 1453 1452 1454 CONECT 1454 1453 1455 1458 CONECT 1455 1454 1456 1457 CONECT 1456 1455 CONECT 1457 1455 CONECT 1458 1454 1459 CONECT 1459 1458 1460 CONECT 1460 1452 1459 MASTER 365 0 2 10 10 0 8 6 1587 1 75 16 END