HEADER IMMUNE SYSTEM 19-AUG-08 2W0L TITLE CRYSTAL STRUCTURE OF THE MUTANT H8P FROM THE RECOMBINANT VARIABLE TITLE 2 DOMAIN 6JAL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: V1-22 PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: V1-22; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FIBRILS, GERM LINE, ANTIBODIES, FIBRINOGENIC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.RUDINO-PINERA,P.GONZALEZRUBIO-GARRIDO,E.HORJALES REVDAT 3 13-DEC-23 2W0L 1 REMARK REVDAT 2 07-NOV-18 2W0L 1 COMPND SOURCE DBREF SEQADV REVDAT 1 17-NOV-09 2W0L 0 JRNL AUTH A.HDZ-SANTOLLO,E.RUDINO-PINERA,D.FUENTES-SILVA, JRNL AUTH 2 P.GONZALEZRUBIO-GARRIDO,L.DELPOZOYAUNER,B.BECERRIL, JRNL AUTH 3 E.HORJALES,A.RODRIGUEZ-ROMERO JRNL TITL CRYSTAL STRUCTURE OF THE VARIABLE DOMAIN 6AJL2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 3 NUMBER OF REFLECTIONS : 19558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1056 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 707 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.421 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.408 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3420 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4656 ; 2.054 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ;12.056 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;41.118 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 524 ;16.252 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.279 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2628 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1276 ; 0.285 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2272 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 280 ; 0.421 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.347 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2268 ; 1.101 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3592 ; 1.855 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1327 ; 2.132 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1064 ; 3.100 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 107 1 REMARK 3 1 B 1 B 107 1 REMARK 3 1 C 1 C 107 1 REMARK 3 1 D 1 D 107 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 837 ; 0.14 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 837 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 837 ; 0.09 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 837 ; 0.09 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 837 ; 0.19 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 837 ; 0.18 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 837 ; 0.18 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 837 ; 0.19 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2W0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1290037245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22584 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 53.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.8 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CD0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.74750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 8 TO PRO REMARK 400 ENGINEERED RESIDUE IN CHAIN B, HIS 8 TO PRO REMARK 400 ENGINEERED RESIDUE IN CHAIN C, HIS 8 TO PRO REMARK 400 ENGINEERED RESIDUE IN CHAIN D, HIS 8 TO PRO REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 67A OG SER A 67 1.60 REMARK 500 CB SER A 67A N SER A 67 1.66 REMARK 500 CA SER A 67A N SER A 67 1.68 REMARK 500 C SER A 67A N SER A 68 2.09 REMARK 500 OG SER A 67A O HOH A 2062 2.14 REMARK 500 O HOH A 2034 O HOH C 2076 2.15 REMARK 500 NZ LYS C 17 O HOH C 2009 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 9 C VAL A 11 N 0.194 REMARK 500 SER A 67A CA SER A 67A CB 0.139 REMARK 500 SER A 67A CA SER A 67A C -0.193 REMARK 500 SER A 67 N SER A 67 CA -0.148 REMARK 500 ASP A 92 C ASP A 92 O -0.174 REMARK 500 SER B 9 C VAL B 11 N 0.147 REMARK 500 SER C 9 C VAL C 11 N 0.253 REMARK 500 SER D 9 C VAL D 11 N 0.180 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 67A CB - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 SER A 67A CA - C - O ANGL. DEV. = 13.5 DEGREES REMARK 500 SER A 67A CA - C - N ANGL. DEV. = -35.8 DEGREES REMARK 500 SER A 67 C - N - CA ANGL. DEV. = -21.3 DEGREES REMARK 500 SER A 67 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 SER A 67 N - CA - C ANGL. DEV. = -25.4 DEGREES REMARK 500 ASP A 92 CA - C - N ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP A 92 O - C - N ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP C 92 N - CA - C ANGL. DEV. = 27.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 51 -46.36 69.58 REMARK 500 ASN A 52 15.42 -147.18 REMARK 500 SER A 67A -74.52 -36.19 REMARK 500 ALA A 84 171.45 177.20 REMARK 500 ASP A 92 -148.64 -80.76 REMARK 500 SER A 94 12.82 -50.45 REMARK 500 ASN A 95 121.97 1.99 REMARK 500 ASP B 51 -46.27 71.41 REMARK 500 ASN B 52 15.22 -148.02 REMARK 500 ALA B 84 175.54 178.02 REMARK 500 SER B 93 -53.94 89.40 REMARK 500 SER B 94 7.91 -52.16 REMARK 500 ASN B 95 121.19 6.90 REMARK 500 HIS B 95A 148.89 -173.28 REMARK 500 ASP C 51 -44.30 70.72 REMARK 500 ASN C 52 13.49 -149.56 REMARK 500 ALA C 84 171.91 175.23 REMARK 500 ASP C 92 -48.20 -17.05 REMARK 500 SER C 93 -60.81 99.68 REMARK 500 SER C 94 -8.17 -10.50 REMARK 500 ASN C 95 122.72 0.50 REMARK 500 HIS C 95A 145.42 -171.51 REMARK 500 ASP D 51 -48.36 68.25 REMARK 500 ASN D 52 15.94 -143.11 REMARK 500 ALA D 84 177.09 177.47 REMARK 500 SER D 93 -54.57 84.48 REMARK 500 SER D 94 7.75 -43.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 67A SER A 67 -117.06 REMARK 500 SER A 94 ASN A 95 -147.73 REMARK 500 TYR C 91 ASP C 92 127.36 REMARK 500 SER C 93 SER C 94 108.09 REMARK 500 SER C 94 ASN C 95 -147.80 REMARK 500 SER D 94 ASN D 95 -86.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 67A 17.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CD0 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN LAMDA-6 LIGHT CHAIN DIMER JTO REMARK 900 RELATED ID: 2W0K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RECOMBINANT VARIABLE DOMAIN 6JAL2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS ENTRY COMPRISE THE FIRST 98 RESIDUES OF UNIPROT ENTRY REMARK 999 PLUS MUTATION H8P DBREF 2W0L A 1 95 UNP Q5NV88 Q5NV88_HUMAN 1 98 DBREF 2W0L B 1 95 UNP Q5NV88 Q5NV88_HUMAN 1 98 DBREF 2W0L C 1 95 UNP Q5NV88 Q5NV88_HUMAN 1 98 DBREF 2W0L D 1 95 UNP Q5NV88 Q5NV88_HUMAN 1 98 SEQADV 2W0L PRO A 8 UNP Q5NV88 HIS 8 ENGINEERED MUTATION SEQADV 2W0L HIS A 95A UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL A 96 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL A 97 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L PHE A 98 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY A 99 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY A 100 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY A 101 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L THR A 102 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LYS A 103 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LEU A 104 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L THR A 105 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL A 106 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LEU A 107 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L PRO B 8 UNP Q5NV88 HIS 8 ENGINEERED MUTATION SEQADV 2W0L HIS B 95A UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL B 96 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL B 97 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L PHE B 98 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY B 99 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY B 100 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY B 101 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L THR B 102 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LYS B 103 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LEU B 104 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L THR B 105 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL B 106 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LEU B 107 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L PRO C 8 UNP Q5NV88 HIS 8 ENGINEERED MUTATION SEQADV 2W0L HIS C 95A UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL C 96 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL C 97 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L PHE C 98 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY C 99 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY C 100 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY C 101 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L THR C 102 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LYS C 103 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LEU C 104 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L THR C 105 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL C 106 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LEU C 107 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L PRO D 8 UNP Q5NV88 HIS 8 ENGINEERED MUTATION SEQADV 2W0L HIS D 95A UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL D 96 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL D 97 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L PHE D 98 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY D 99 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY D 100 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L GLY D 101 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L THR D 102 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LYS D 103 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LEU D 104 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L THR D 105 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L VAL D 106 UNP Q5NV88 EXPRESSION TAG SEQADV 2W0L LEU D 107 UNP Q5NV88 EXPRESSION TAG SEQRES 1 A 111 ASN PHE MET LEU THR GLN PRO PRO SER VAL SER GLU SER SEQRES 2 A 111 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 A 111 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 A 111 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 A 111 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 A 111 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 A 111 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 A 111 GLN SER TYR ASP SER SER ASN HIS VAL VAL PHE GLY GLY SEQRES 9 A 111 GLY THR LYS LEU THR VAL LEU SEQRES 1 B 111 ASN PHE MET LEU THR GLN PRO PRO SER VAL SER GLU SER SEQRES 2 B 111 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 B 111 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 B 111 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 B 111 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 B 111 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 B 111 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 B 111 GLN SER TYR ASP SER SER ASN HIS VAL VAL PHE GLY GLY SEQRES 9 B 111 GLY THR LYS LEU THR VAL LEU SEQRES 1 C 111 ASN PHE MET LEU THR GLN PRO PRO SER VAL SER GLU SER SEQRES 2 C 111 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 C 111 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 C 111 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 C 111 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 C 111 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 C 111 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 C 111 GLN SER TYR ASP SER SER ASN HIS VAL VAL PHE GLY GLY SEQRES 9 C 111 GLY THR LYS LEU THR VAL LEU SEQRES 1 D 111 ASN PHE MET LEU THR GLN PRO PRO SER VAL SER GLU SER SEQRES 2 D 111 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 D 111 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 D 111 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 D 111 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 D 111 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 D 111 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 D 111 GLN SER TYR ASP SER SER ASN HIS VAL VAL PHE GLY GLY SEQRES 9 D 111 GLY THR LYS LEU THR VAL LEU FORMUL 5 HOH *316(H2 O) HELIX 1 1 LYS A 79 GLU A 83 5 5 HELIX 2 2 LYS B 79 GLU B 83 5 5 HELIX 3 3 LYS C 79 GLU C 83 5 5 HELIX 4 4 LYS D 79 GLU D 83 5 5 SHEET 1 AA 4 LEU A 4 THR A 5 0 SHEET 2 AA 4 VAL A 19 ARG A 25 -1 O THR A 24 N THR A 5 SHEET 3 AA 4 SER A 70 ILE A 75 -1 O ALA A 71 N CYS A 23 SHEET 4 AA 4 PHE A 62 ASP A 66A-1 O SER A 63 N THR A 74 SHEET 1 AB 5 SER A 9 GLU A 13 0 SHEET 2 AB 5 THR A 102 VAL A 106 1 O LYS A 103 N VAL A 11 SHEET 3 AB 5 ALA A 84 TYR A 91 -1 O ALA A 84 N LEU A 104 SHEET 4 AB 5 GLN A 34 GLN A 38 -1 O GLN A 34 N GLN A 89 SHEET 5 AB 5 THR A 45 ILE A 48 -1 O THR A 45 N GLN A 37 SHEET 1 AC 4 SER A 9 GLU A 13 0 SHEET 2 AC 4 THR A 102 VAL A 106 1 O LYS A 103 N VAL A 11 SHEET 3 AC 4 ALA A 84 TYR A 91 -1 O ALA A 84 N LEU A 104 SHEET 4 AC 4 VAL A 96 PHE A 98 -1 O VAL A 97 N SER A 90 SHEET 1 BA 4 LEU B 4 THR B 5 0 SHEET 2 BA 4 VAL B 19 ARG B 25 -1 O THR B 24 N THR B 5 SHEET 3 BA 4 SER B 70 ILE B 75 -1 O ALA B 71 N CYS B 23 SHEET 4 BA 4 PHE B 62 ASP B 66A-1 O SER B 63 N THR B 74 SHEET 1 BB 5 SER B 9 GLU B 13 0 SHEET 2 BB 5 THR B 102 VAL B 106 1 O LYS B 103 N VAL B 11 SHEET 3 BB 5 ALA B 84 TYR B 91 -1 O ALA B 84 N LEU B 104 SHEET 4 BB 5 GLN B 34 GLN B 38 -1 O GLN B 34 N GLN B 89 SHEET 5 BB 5 THR B 45 ILE B 48 -1 O THR B 45 N GLN B 37 SHEET 1 BC 4 SER B 9 GLU B 13 0 SHEET 2 BC 4 THR B 102 VAL B 106 1 O LYS B 103 N VAL B 11 SHEET 3 BC 4 ALA B 84 TYR B 91 -1 O ALA B 84 N LEU B 104 SHEET 4 BC 4 VAL B 96 PHE B 98 -1 O VAL B 97 N SER B 90 SHEET 1 CA 4 LEU C 4 THR C 5 0 SHEET 2 CA 4 VAL C 19 ARG C 25 -1 O THR C 24 N THR C 5 SHEET 3 CA 4 SER C 70 ILE C 75 -1 O ALA C 71 N CYS C 23 SHEET 4 CA 4 PHE C 62 ASP C 66A-1 O SER C 63 N THR C 74 SHEET 1 CB 5 SER C 9 GLU C 13 0 SHEET 2 CB 5 THR C 102 VAL C 106 1 O LYS C 103 N VAL C 11 SHEET 3 CB 5 ALA C 84 TYR C 91 -1 O ALA C 84 N LEU C 104 SHEET 4 CB 5 GLN C 34 GLN C 38 -1 O GLN C 34 N GLN C 89 SHEET 5 CB 5 THR C 45 ILE C 48 -1 O THR C 45 N GLN C 37 SHEET 1 CC 4 SER C 9 GLU C 13 0 SHEET 2 CC 4 THR C 102 VAL C 106 1 O LYS C 103 N VAL C 11 SHEET 3 CC 4 ALA C 84 TYR C 91 -1 O ALA C 84 N LEU C 104 SHEET 4 CC 4 VAL C 96 PHE C 98 -1 O VAL C 97 N SER C 90 SHEET 1 DA 4 LEU D 4 THR D 5 0 SHEET 2 DA 4 VAL D 19 ARG D 25 -1 O THR D 24 N THR D 5 SHEET 3 DA 4 SER D 70 ILE D 75 -1 O ALA D 71 N CYS D 23 SHEET 4 DA 4 PHE D 62 ASP D 66A-1 O SER D 63 N THR D 74 SHEET 1 DB 8 SER D 9 GLU D 13 0 SHEET 2 DB 8 THR D 102 VAL D 106 1 O LYS D 103 N VAL D 11 SHEET 3 DB 8 ALA D 84 TYR D 91 -1 O ALA D 84 N LEU D 104 SHEET 4 DB 8 THR D 45 ILE D 48 0 SHEET 5 DB 8 GLN D 34 GLN D 38 -1 O TRP D 35 N VAL D 47 SHEET 6 DB 8 ALA D 84 TYR D 91 -1 O ASP D 85 N GLN D 38 SHEET 7 DB 8 VAL D 96 PHE D 98 -1 O VAL D 97 N SER D 90 SHEET 8 DB 8 ALA D 84 TYR D 91 -1 O SER D 90 N VAL D 97 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.14 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.09 SSBOND 3 CYS C 23 CYS C 88 1555 1555 2.13 SSBOND 4 CYS D 23 CYS D 88 1555 1555 2.11 CRYST1 40.940 85.495 69.152 90.00 91.20 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024426 0.000000 0.000512 0.00000 SCALE2 0.000000 0.011697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014464 0.00000