HEADER TRANSFERASE 19-AUG-08 2W0N TITLE PLASTICITY OF PAS DOMAIN AND POTENTIAL ROLE FOR SIGNAL TITLE 2 TRANSDUCTION IN THE HISTIDINE-KINASE DCUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN DCUS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DCUS-PASC, RESIDUES 211-325; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMW309 KEYWDS SIGNAL TRANSDUCTION, TWO-COMPONENT REGULATORY SYSTEM, PAS, KEYWDS 2 DCUS, KINASE, MEMBRANE, TRANSFERASE, SOLID STATE NMR, CELL KEYWDS 3 INNER MEMBRANE, CELL MEMBRANE, TRANSMEMBRANE, KEYWDS 4 PHOSPHOPROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR M.ETZKORN,H.KNEUPER,P.DUENNWALD,V.VIJAYAN,J.KRAEMER, AUTHOR 2 C.GRIESINGER,S.BECKER,G.UNDEN,M.BALDUS REVDAT 5 07-AUG-13 2W0N 1 REVDAT REVDAT 4 24-JUL-13 2W0N 1 SOURCE EXPDTA REVDAT JRNL REVDAT 4 2 REMARK VERSN SEQADV DBREF REVDAT 4 3 SCALE1 SCALE2 REVDAT 3 15-JAN-09 2W0N 1 VERSN REVDAT 2 07-OCT-08 2W0N 1 JRNL REVDAT 1 30-SEP-08 2W0N 0 JRNL AUTH M.ETZKORN,H.KNEUPER,P.DUENNWALD,V.VIJAYAN, JRNL AUTH 2 J.KRAEMER,C.GRIESINGER,S.BECKER,G.UNDEN,M.BALDUS JRNL TITL PLASTICITY OF THE PAS DOMAIN AND A POTENTIAL ROLE JRNL TITL 2 FOR SIGNAL TRANSDUCTION IN THE HISTIDINE KINASE JRNL TITL 3 DCUS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 1031 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18820688 JRNL DOI 10.1038/NSMB.1493 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-AUG-08. REMARK 100 THE PDBE ID CODE IS EBI-37113. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273.0 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CC ; CHHC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, XPLOR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING SOLID STATE NMR REMARK 210 SPECTROSCOPY AND COMPARATIVE MODELING. REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 3 -71.08 -87.45 REMARK 500 1 LEU A 5 77.43 -151.06 REMARK 500 1 SER A 23 -171.11 55.44 REMARK 500 1 ILE A 24 -66.18 -90.71 REMARK 500 1 GLU A 26 43.41 -96.08 REMARK 500 1 ASP A 32 107.55 -55.55 REMARK 500 1 ASP A 33 -84.06 59.23 REMARK 500 1 ARG A 34 -155.32 -78.02 REMARK 500 1 GLU A 36 96.82 -69.47 REMARK 500 1 ASN A 49 91.33 59.38 REMARK 500 1 TYR A 50 -62.78 -153.75 REMARK 500 1 LYS A 58 46.01 71.76 REMARK 500 1 SER A 60 94.94 60.55 REMARK 500 1 THR A 61 -46.24 -139.29 REMARK 500 1 HIS A 64 121.59 64.38 REMARK 500 1 PRO A 81 -169.12 -55.81 REMARK 500 1 LYS A 90 69.46 -153.88 REMARK 500 2 MET A 3 78.66 60.20 REMARK 500 2 SER A 11 66.64 62.19 REMARK 500 2 ASP A 33 147.16 63.02 REMARK 500 2 ARG A 34 -76.08 66.08 REMARK 500 2 ASN A 49 -178.32 178.00 REMARK 500 2 SER A 53 -63.04 70.71 REMARK 500 2 GLU A 57 176.56 65.42 REMARK 500 2 LYS A 58 -80.02 -60.04 REMARK 500 2 SER A 63 -65.98 -170.59 REMARK 500 2 SER A 65 102.41 -164.75 REMARK 500 2 SER A 67 -52.12 -164.91 REMARK 500 2 GLN A 68 41.26 -143.44 REMARK 500 2 LYS A 90 -80.69 -121.67 REMARK 500 2 ASP A 91 20.08 -147.78 REMARK 500 2 ARG A 92 -102.62 -94.60 REMARK 500 2 LEU A 93 124.98 159.54 REMARK 500 3 HIS A 2 -167.57 45.88 REMARK 500 3 ILE A 24 -68.66 68.25 REMARK 500 3 ASP A 33 -76.54 64.73 REMARK 500 3 ARG A 34 -82.06 -94.14 REMARK 500 3 GLU A 36 -65.81 69.36 REMARK 500 3 LEU A 48 -72.05 -74.20 REMARK 500 3 TYR A 50 -81.25 -70.34 REMARK 500 3 ARG A 51 -166.95 48.30 REMARK 500 3 LYS A 52 34.48 -152.96 REMARK 500 3 SER A 53 -61.12 -150.13 REMARK 500 3 HIS A 64 78.41 51.46 REMARK 500 3 SER A 65 172.41 62.65 REMARK 500 3 SER A 67 -56.64 -152.23 REMARK 500 3 PRO A 81 -160.62 -57.70 REMARK 500 3 LYS A 90 -44.82 -133.16 REMARK 500 3 ASP A 91 -39.86 -164.15 REMARK 500 3 ARG A 102 133.13 63.88 REMARK 500 3 ASN A 104 161.71 59.45 REMARK 500 3 VAL A 106 71.32 -105.16 REMARK 500 4 MET A 3 85.30 -154.41 REMARK 500 4 SER A 23 147.34 65.96 REMARK 500 4 ASP A 32 -75.36 -49.99 REMARK 500 4 ASP A 33 -67.62 -124.58 REMARK 500 4 GLU A 36 118.53 62.45 REMARK 500 4 THR A 38 -61.56 69.45 REMARK 500 4 LYS A 52 -164.54 -104.60 REMARK 500 4 SER A 53 -67.42 69.49 REMARK 500 4 HIS A 64 149.80 -173.87 REMARK 500 4 SER A 65 68.67 -109.05 REMARK 500 4 TRP A 66 40.38 -166.22 REMARK 500 4 ARG A 102 -79.19 -56.85 REMARK 500 4 SER A 103 175.92 56.76 REMARK 500 5 SER A 11 30.70 -97.39 REMARK 500 5 SER A 23 111.76 60.28 REMARK 500 5 ILE A 24 110.20 60.09 REMARK 500 5 ASP A 32 -168.38 -58.11 REMARK 500 5 ARG A 34 -67.46 -93.48 REMARK 500 5 GLU A 36 -52.74 -125.70 REMARK 500 5 ASP A 42 -71.88 -65.32 REMARK 500 5 ASN A 49 -176.31 -174.26 REMARK 500 5 TYR A 50 60.64 -105.95 REMARK 500 5 LYS A 58 117.90 -165.84 REMARK 500 5 SER A 63 -56.32 -120.74 REMARK 500 5 GLN A 68 73.62 -67.20 REMARK 500 5 THR A 80 109.83 -57.81 REMARK 500 5 ASP A 91 -41.95 -159.67 REMARK 500 5 VAL A 101 98.72 -49.08 REMARK 500 5 ARG A 102 109.84 -54.86 REMARK 500 6 ILE A 10 -72.05 -54.02 REMARK 500 6 SER A 11 44.47 175.49 REMARK 500 6 GLN A 22 -72.19 -55.21 REMARK 500 6 SER A 23 -168.72 53.68 REMARK 500 6 GLU A 26 42.86 -96.27 REMARK 500 6 ASP A 33 -77.12 64.01 REMARK 500 6 THR A 38 75.74 -176.59 REMARK 500 6 TYR A 50 -69.45 -123.16 REMARK 500 6 LEU A 59 49.82 -143.37 REMARK 500 6 THR A 61 155.50 62.14 REMARK 500 6 SER A 65 117.40 -166.23 REMARK 500 6 GLN A 68 50.98 -171.57 REMARK 500 6 LYS A 90 -75.64 -143.68 REMARK 500 6 ASP A 91 20.08 -146.47 REMARK 500 6 ASN A 104 176.01 -58.19 REMARK 500 6 VAL A 106 77.04 64.91 REMARK 500 7 ILE A 24 -48.43 82.26 REMARK 500 7 ASP A 33 -75.56 65.56 REMARK 500 7 ASN A 41 -176.74 -64.14 REMARK 500 7 ASN A 49 -58.92 -177.61 REMARK 500 7 TYR A 50 -48.49 -174.78 REMARK 500 7 ARG A 51 166.79 60.83 REMARK 500 7 LYS A 52 30.66 -157.44 REMARK 500 7 SER A 53 -55.87 -168.56 REMARK 500 7 ASP A 56 -165.19 -113.78 REMARK 500 7 GLU A 57 155.59 68.03 REMARK 500 7 SER A 60 -168.78 -114.52 REMARK 500 7 SER A 67 -75.32 -135.94 REMARK 500 7 GLN A 68 44.87 -166.67 REMARK 500 7 ASP A 78 -74.40 -60.84 REMARK 500 7 LYS A 90 71.24 -164.18 REMARK 500 7 VAL A 106 127.04 64.04 REMARK 500 7 LYS A 117 36.03 -158.75 REMARK 500 8 HIS A 2 37.33 -169.91 REMARK 500 8 LEU A 5 35.16 -142.65 REMARK 500 8 SER A 11 85.84 56.02 REMARK 500 8 ASP A 32 -78.76 -58.40 REMARK 500 8 ASP A 33 -72.80 -140.54 REMARK 500 8 ASN A 49 -64.70 71.27 REMARK 500 8 GLU A 57 -163.53 63.12 REMARK 500 8 LYS A 58 140.51 68.09 REMARK 500 8 SER A 60 -73.00 -74.63 REMARK 500 8 SER A 67 173.44 61.01 REMARK 500 8 ASP A 91 -38.52 -174.51 REMARK 500 8 VAL A 101 -176.46 47.14 REMARK 500 8 LYS A 117 -78.15 64.33 REMARK 500 9 HIS A 2 -45.13 -140.19 REMARK 500 9 LEU A 5 -68.68 -146.10 REMARK 500 9 SER A 11 88.93 59.98 REMARK 500 9 SER A 23 155.50 61.55 REMARK 500 9 LYS A 25 36.91 -97.28 REMARK 500 9 ARG A 34 -75.24 -151.75 REMARK 500 9 THR A 38 -33.86 174.51 REMARK 500 9 ASN A 49 166.58 60.48 REMARK 500 9 TYR A 50 128.11 63.53 REMARK 500 9 ARG A 51 -172.34 60.82 REMARK 500 9 LYS A 52 -65.15 -145.17 REMARK 500 9 ASP A 56 -72.66 -60.32 REMARK 500 9 LYS A 58 -80.56 -89.92 REMARK 500 9 LEU A 59 34.96 -177.11 REMARK 500 9 SER A 60 -86.06 52.71 REMARK 500 9 THR A 61 85.91 -152.17 REMARK 500 9 LEU A 62 -179.78 60.48 REMARK 500 9 GLN A 68 39.85 -150.51 REMARK 500 9 ARG A 92 -94.37 64.11 REMARK 500 9 LEU A 93 -179.07 172.04 REMARK 500 9 SER A 103 -70.72 -99.94 REMARK 500 9 LYS A 117 145.00 -175.01 REMARK 500 10 HIS A 2 55.50 -144.55 REMARK 500 10 SER A 11 115.26 63.42 REMARK 500 10 SER A 23 160.33 62.54 REMARK 500 10 GLU A 26 98.04 -59.88 REMARK 500 10 ASP A 33 108.99 60.66 REMARK 500 10 THR A 38 49.72 179.31 REMARK 500 10 ARG A 51 23.82 -153.87 REMARK 500 10 LYS A 52 -156.21 67.76 REMARK 500 10 ASP A 56 -170.57 45.69 REMARK 500 10 LYS A 58 -78.39 -75.12 REMARK 500 10 LEU A 59 101.31 -177.52 REMARK 500 10 THR A 61 125.24 65.42 REMARK 500 10 HIS A 64 101.86 -166.43 REMARK 500 10 SER A 65 178.36 62.83 REMARK 500 10 SER A 67 -63.52 -158.26 REMARK 500 10 GLN A 68 45.66 -176.28 REMARK 500 10 THR A 80 107.22 59.91 REMARK 500 10 PRO A 81 70.40 -63.83 REMARK 500 10 LYS A 90 -87.18 57.17 REMARK 500 10 LEU A 93 129.45 61.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OJG RELATED DB: PDB REMARK 900 SENSORY DOMAIN OF THE MEMBRANEOUS TWO- REMARK 900 COMPONENT FUMARATE SENSOR DCUS OF E. COLI REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE THREE N TERMINAL RESIDUES G,H,M ARE INSERTED AND NOT REMARK 999 PART OF THE NATIVE SEQUENCE. SEQADV 2W0N GLY A 1 UNP P0AEC8 EXPRESSION TAG SEQADV 2W0N HIS A 2 UNP P0AEC8 EXPRESSION TAG SEQADV 2W0N MET A 3 UNP P0AEC8 EXPRESSION TAG DBREF 2W0N A 4 118 UNP P0AEC8 DCUS_ECOLI 211 325 SEQRES 1 A 118 GLY HIS MET GLY LEU GLU PRO TYR GLU ILE SER THR LEU SEQRES 2 A 118 PHE GLU GLN ARG GLN ALA MET LEU GLN SER ILE LYS GLU SEQRES 3 A 118 GLY VAL VAL ALA VAL ASP ASP ARG GLY GLU VAL THR LEU SEQRES 4 A 118 ILE ASN ASP ALA ALA GLN GLU LEU LEU ASN TYR ARG LYS SEQRES 5 A 118 SER GLN ASP ASP GLU LYS LEU SER THR LEU SER HIS SER SEQRES 6 A 118 TRP SER GLN VAL VAL ASP VAL SER GLU VAL LEU ARG ASP SEQRES 7 A 118 GLY THR PRO ARG ARG ASP GLU GLU ILE THR ILE LYS ASP SEQRES 8 A 118 ARG LEU LEU LEU ILE ASN THR VAL PRO VAL ARG SER ASN SEQRES 9 A 118 GLY VAL ILE ILE GLY ALA ILE SER THR PHE ARG ASP LYS SEQRES 10 A 118 THR HELIX 1 1 GLU A 6 SER A 11 1 6 HELIX 2 2 LEU A 13 SER A 23 1 11 HELIX 3 3 ASN A 41 ASN A 49 1 9 HELIX 4 4 VAL A 69 ASP A 78 1 10 SHEET 1 AA 3 VAL A 29 VAL A 31 0 SHEET 2 AA 3 ALA A 110 SER A 112 -1 O ALA A 110 N VAL A 31 SHEET 3 AA 3 THR A 98 VAL A 99 -1 O VAL A 99 N ILE A 111 SHEET 1 AB 2 ILE A 87 THR A 88 0 SHEET 2 AB 2 LEU A 93 LEU A 94 -1 O LEU A 94 N ILE A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1