HEADER TRANSFERASE 08-OCT-08 2W0S TITLE CRYSTAL STRUCTURE OF VACCINIA VIRUS THYMIDYLATE KINASE BOUND TO TITLE 2 BRIVUDIN-5'-MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS COPENHAGEN; SOURCE 3 ORGANISM_TAXID: 10249; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA PLYSS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NUCLEOTIDE BIOSYNTHESIS, ATP-BINDING, NUCLEOTIDE-BINDING, KINASE, KEYWDS 2 POXVIRUS, TMP KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CAILLAT,D.TOPALIS,L.A.AGROFOGLIO,S.POCHET,J.BALZARINI,D.DEVILLE- AUTHOR 2 BONNE,P.MEYER REVDAT 6 13-DEC-23 2W0S 1 REMARK LINK REVDAT 5 20-NOV-13 2W0S 1 JRNL REMARK VERSN REVDAT 4 16-JUN-09 2W0S 1 REMARK REVDAT 3 24-FEB-09 2W0S 1 VERSN REVDAT 2 18-NOV-08 2W0S 1 JRNL REVDAT 1 21-OCT-08 2W0S 0 JRNL AUTH C.CAILLAT,D.TOPALIS,L.A.AGROFOGLIO,S.POCHET,J.BALZARINI, JRNL AUTH 2 D.DEVILLE-BONNE,P.MEYER JRNL TITL CRYSTAL STRUCTURE OF POXVIRUS THYMIDYLATE KINASE: AN JRNL TITL 2 UNEXPECTED DIMERIZATION HAS IMPLICATIONS FOR ANTIVIRAL JRNL TITL 3 THERAPY JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 16900 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18971333 JRNL DOI 10.1073/PNAS.0804525105 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8547 - 6.8468 0.99 1251 142 0.1780 0.2295 REMARK 3 2 6.8468 - 5.4402 1.00 1276 144 0.1908 0.2530 REMARK 3 3 5.4402 - 4.7541 1.00 1269 146 0.1612 0.2219 REMARK 3 4 4.7541 - 4.3202 1.00 1257 144 0.1577 0.2449 REMARK 3 5 4.3202 - 4.0109 1.00 1256 142 0.1871 0.2277 REMARK 3 6 4.0109 - 3.7747 1.00 1267 141 0.2107 0.2828 REMARK 3 7 3.7747 - 3.5858 1.00 1271 143 0.2104 0.3475 REMARK 3 8 3.5858 - 3.4298 1.00 1255 141 0.2349 0.3458 REMARK 3 9 3.4298 - 3.2979 1.00 1286 144 0.2418 0.3516 REMARK 3 10 3.2979 - 3.1842 1.00 1269 143 0.2415 0.3369 REMARK 3 11 3.1842 - 3.0846 1.00 1249 136 0.2572 0.2850 REMARK 3 12 3.0846 - 2.9965 1.00 1270 144 0.2773 0.3240 REMARK 3 13 2.9965 - 2.9177 0.96 1218 133 0.3070 0.3897 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 24.36 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.61750 REMARK 3 B22 (A**2) : 19.36590 REMARK 3 B33 (A**2) : -11.74850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3388 REMARK 3 ANGLE : 1.361 4581 REMARK 3 CHIRALITY : 0.082 512 REMARK 3 PLANARITY : 0.005 574 REMARK 3 DIHEDRAL : 21.782 1253 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:60 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 2:60 ) REMARK 3 ATOM PAIRS NUMBER : 466 REMARK 3 RMSD : 0.052 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 64:204 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 64:204 ) REMARK 3 ATOM PAIRS NUMBER : 1132 REMARK 3 RMSD : 0.052 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1290037704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9198 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69977 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.920 REMARK 200 RESOLUTION RANGE LOW (A) : 49.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V54 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 2000 MME, 100 MM TRIS-HCL PH REMARK 280 8.5, 5 MM MGCL2, 28 MM BVDU REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.52000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.52000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS ENTRY CONTAINS A SECONDARY BVP (BVP 1209) REMARK 300 BINDING SITE THAT IS PRESENT AT THE DIMERIC INTERFACE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 -29.18500 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -47.52000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -29.18500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 47.52000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 31 CB CG OD1 ND2 REMARK 470 LYS A 133 CB CG CD CE NZ REMARK 470 ASN B 31 CB CG OD1 ND2 REMARK 470 LYS B 133 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 117 OD1 ASN B 60 2455 1.99 REMARK 500 O SER A 114 ND2 ASN B 60 2455 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 -172.15 -66.91 REMARK 500 LYS A 57 144.23 -178.19 REMARK 500 ARG A 93 149.29 60.00 REMARK 500 TYR A 94 -156.91 -160.52 REMARK 500 SER A 132 -72.25 -60.71 REMARK 500 LYS A 133 6.97 -65.02 REMARK 500 THR B 43 -174.48 -64.66 REMARK 500 LYS B 57 143.67 -179.49 REMARK 500 ARG B 93 147.30 63.35 REMARK 500 TYR B 94 -156.02 -159.66 REMARK 500 SER B 132 -72.67 -60.16 REMARK 500 LYS B 133 6.53 -64.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 GLU A 145 OE2 81.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 13 OD1 REMARK 620 2 GLU B 145 OE2 76.1 REMARK 620 3 BVP B1207 O3P 85.5 161.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BVP A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BVP B 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BVP B 1209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V54 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VACCINIA VIRUS THYMIDYLATE KINASE BOUND TO TDP DBREF 2W0S A 1 204 UNP P68693 KTHY_VACCC 1 204 DBREF 2W0S B 1 204 UNP P68693 KTHY_VACCC 1 204 SEQRES 1 A 204 MET SER ARG GLY ALA LEU ILE VAL PHE GLU GLY LEU ASP SEQRES 2 A 204 LYS SER GLY LYS THR THR GLN CYS MET ASN ILE MET GLU SEQRES 3 A 204 SER ILE PRO ALA ASN THR ILE LYS TYR LEU ASN PHE PRO SEQRES 4 A 204 GLN ARG SER THR VAL THR GLY LYS MET ILE ASP ASP TYR SEQRES 5 A 204 LEU THR ARG LYS LYS THR TYR ASN ASP HIS ILE VAL ASN SEQRES 6 A 204 LEU LEU PHE CYS ALA ASN ARG TRP GLU PHE ALA SER PHE SEQRES 7 A 204 ILE GLN GLU GLN LEU GLU GLN GLY ILE THR LEU ILE VAL SEQRES 8 A 204 ASP ARG TYR ALA PHE SER GLY VAL ALA TYR ALA ALA ALA SEQRES 9 A 204 LYS GLY ALA SER MET THR LEU SER LYS SER TYR GLU SER SEQRES 10 A 204 GLY LEU PRO LYS PRO ASP LEU VAL ILE PHE LEU GLU SER SEQRES 11 A 204 GLY SER LYS GLU ILE ASN ARG ASN VAL GLY GLU GLU ILE SEQRES 12 A 204 TYR GLU ASP VAL THR PHE GLN GLN LYS VAL LEU GLN GLU SEQRES 13 A 204 TYR LYS LYS MET ILE GLU GLU GLY ASP ILE HIS TRP GLN SEQRES 14 A 204 ILE ILE SER SER GLU PHE GLU GLU ASP VAL LYS LYS GLU SEQRES 15 A 204 LEU ILE LYS ASN ILE VAL ILE GLU ALA ILE HIS THR VAL SEQRES 16 A 204 THR GLY PRO VAL GLY GLN LEU TRP MET SEQRES 1 B 204 MET SER ARG GLY ALA LEU ILE VAL PHE GLU GLY LEU ASP SEQRES 2 B 204 LYS SER GLY LYS THR THR GLN CYS MET ASN ILE MET GLU SEQRES 3 B 204 SER ILE PRO ALA ASN THR ILE LYS TYR LEU ASN PHE PRO SEQRES 4 B 204 GLN ARG SER THR VAL THR GLY LYS MET ILE ASP ASP TYR SEQRES 5 B 204 LEU THR ARG LYS LYS THR TYR ASN ASP HIS ILE VAL ASN SEQRES 6 B 204 LEU LEU PHE CYS ALA ASN ARG TRP GLU PHE ALA SER PHE SEQRES 7 B 204 ILE GLN GLU GLN LEU GLU GLN GLY ILE THR LEU ILE VAL SEQRES 8 B 204 ASP ARG TYR ALA PHE SER GLY VAL ALA TYR ALA ALA ALA SEQRES 9 B 204 LYS GLY ALA SER MET THR LEU SER LYS SER TYR GLU SER SEQRES 10 B 204 GLY LEU PRO LYS PRO ASP LEU VAL ILE PHE LEU GLU SER SEQRES 11 B 204 GLY SER LYS GLU ILE ASN ARG ASN VAL GLY GLU GLU ILE SEQRES 12 B 204 TYR GLU ASP VAL THR PHE GLN GLN LYS VAL LEU GLN GLU SEQRES 13 B 204 TYR LYS LYS MET ILE GLU GLU GLY ASP ILE HIS TRP GLN SEQRES 14 B 204 ILE ILE SER SER GLU PHE GLU GLU ASP VAL LYS LYS GLU SEQRES 15 B 204 LEU ILE LYS ASN ILE VAL ILE GLU ALA ILE HIS THR VAL SEQRES 16 B 204 THR GLY PRO VAL GLY GLN LEU TRP MET HET MG A1205 1 HET MG A1206 1 HET BVP A1207 23 HET SO4 A1208 5 HET MG B1205 1 HET MG B1206 1 HET BVP B1207 23 HET SO4 B1208 5 HET BVP B1209 23 HETNAM MG MAGNESIUM ION HETNAM BVP (E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION HETSYN BVP BVDU-MP FORMUL 3 MG 4(MG 2+) FORMUL 5 BVP 3(C11 H14 BR N2 O8 P) FORMUL 6 SO4 2(O4 S 2-) FORMUL 12 HOH *6(H2 O) HELIX 1 1 GLY A 16 ILE A 28 1 13 HELIX 2 2 THR A 43 THR A 54 1 12 HELIX 3 3 ASN A 60 GLU A 74 1 15 HELIX 4 4 PHE A 75 GLN A 85 1 11 HELIX 5 5 TYR A 94 LYS A 105 1 12 HELIX 6 6 SER A 108 SER A 117 1 10 HELIX 7 7 GLY A 131 ASN A 136 1 6 HELIX 8 8 ASP A 146 GLU A 162 1 17 HELIX 9 9 GLU A 176 THR A 194 1 19 HELIX 10 10 GLY B 16 ILE B 28 1 13 HELIX 11 11 THR B 43 THR B 54 1 12 HELIX 12 12 ASN B 60 GLU B 74 1 15 HELIX 13 13 PHE B 75 GLN B 85 1 11 HELIX 14 14 TYR B 94 LYS B 105 1 12 HELIX 15 15 SER B 108 SER B 117 1 10 HELIX 16 16 GLY B 131 ASN B 136 1 6 HELIX 17 17 ASP B 146 GLU B 163 1 18 HELIX 18 18 GLU B 176 THR B 194 1 19 SHEET 1 AA 5 ILE A 33 ASN A 37 0 SHEET 2 AA 5 THR A 88 ASP A 92 1 O THR A 88 N LYS A 34 SHEET 3 AA 5 LEU A 6 GLY A 11 1 O ILE A 7 N VAL A 91 SHEET 4 AA 5 LEU A 124 LEU A 128 1 O LEU A 124 N VAL A 8 SHEET 5 AA 5 TRP A 168 ILE A 171 1 O GLN A 169 N PHE A 127 SHEET 1 AB 2 PRO A 120 LYS A 121 0 SHEET 2 AB 2 GLY A 200 GLN A 201 -1 O GLY A 200 N LYS A 121 SHEET 1 BA 5 ILE B 33 ASN B 37 0 SHEET 2 BA 5 THR B 88 ASP B 92 1 O THR B 88 N LYS B 34 SHEET 3 BA 5 LEU B 6 GLY B 11 1 O ILE B 7 N VAL B 91 SHEET 4 BA 5 LEU B 124 LEU B 128 1 O LEU B 124 N VAL B 8 SHEET 5 BA 5 TRP B 168 ILE B 171 1 O GLN B 169 N PHE B 127 SHEET 1 BB 2 PRO B 120 LYS B 121 0 SHEET 2 BB 2 GLY B 200 GLN B 201 -1 O GLY B 200 N LYS B 121 LINK OD1 ASP A 13 MG MG A1206 1555 1555 2.43 LINK OE2 GLU A 145 MG MG A1206 1555 1555 2.53 LINK OD1 ASP B 13 MG MG B1206 1555 1555 2.42 LINK OD2 ASP B 92 MG MG B1205 1555 1555 2.66 LINK OE2 GLU B 145 MG MG B1206 1555 1555 2.90 LINK MG MG B1206 O3P BVP B1207 1555 1555 2.55 CISPEP 1 PHE A 38 PRO A 39 0 3.18 CISPEP 2 PHE B 38 PRO B 39 0 4.58 SITE 1 AC1 4 THR B 18 ASN B 37 ASP B 92 BVP B1207 SITE 1 AC2 4 THR A 18 ASN A 37 ASP A 92 BVP A1207 SITE 1 AC3 4 ASP A 13 GLU A 142 GLU A 145 BVP A1207 SITE 1 AC4 4 ASP B 13 GLU B 142 GLU B 145 BVP B1207 SITE 1 AC5 14 ASP A 13 PHE A 38 ARG A 41 VAL A 64 SITE 2 AC5 14 ASN A 65 PHE A 68 ARG A 72 ARG A 93 SITE 3 AC5 14 GLY A 98 TYR A 101 LYS A 105 TYR A 144 SITE 4 AC5 14 MG A1205 MG A1206 SITE 1 AC6 14 ASP B 13 PHE B 38 ARG B 41 ASN B 65 SITE 2 AC6 14 PHE B 68 ARG B 72 ARG B 93 GLY B 98 SITE 3 AC6 14 TYR B 101 ALA B 102 LYS B 105 TYR B 144 SITE 4 AC6 14 MG B1205 MG B1206 SITE 1 AC7 5 LYS A 14 SER A 15 GLY A 16 LYS A 17 SITE 2 AC7 5 THR A 18 SITE 1 AC8 5 LYS B 14 SER B 15 GLY B 16 LYS B 17 SITE 2 AC8 5 THR B 18 SITE 1 AC9 4 ASN A 60 HIS A 62 ILE A 63 TRP B 73 CRYST1 58.370 78.350 95.040 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010522 0.00000