HEADER TRANSCRIPTION 10-OCT-08 2W0T TITLE SOLUTION STRUCTURE OF THE FCS ZINC FINGER DOMAIN OF HUMAN LMBL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE 2 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FCS ZINC FINGER DOMAIN, RESIDUES 82-124; COMPND 5 SYNONYM: L(3)MBT-LIKE 2 PROTEIN, H-L(3)MBT-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC, YACG, LMBL2, NUCLEUS, ZINC-FINGER, RNA BINDING, MBT REPEATS, KEYWDS 2 PCG PROTEINS, POLYMORPHISM, TRANSCRIPTION, MYM ZINC FINGER, TREBLE KEYWDS 3 CLEF FOLD, CHROMATIN REGULATOR, HUMAN LETHAL(3) MALIGNANT BRAIN KEYWDS 4 TUMOR 2 PROTEIN, ALTERNATIVE SPLICING, TRANSCRIPTION REGULATION, KEYWDS 5 METAL-BINDING, PHOSPHOPROTEIN, POLYCOMB GROUP EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.C.LECHTENBERG,M.D.ALLEN,M.BYCROFT REVDAT 3 19-APR-17 2W0T 1 REMARK REVDAT 2 10-MAR-09 2W0T 1 JRNL ATOM MASTER REVDAT 1 20-JAN-09 2W0T 0 JRNL AUTH B.C.LECHTENBERG,M.D.ALLEN,T.J.RUTHERFORD,S.M.FREUND, JRNL AUTH 2 M.BYCROFT JRNL TITL SOLUTION STRUCTURE OF THE FCS ZINC FINGER DOMAIN OF THE JRNL TITL 2 HUMAN POLYCOMB GROUP PROTEIN L(3)MBT-LIKE 2. JRNL REF PROTEIN SCI. V. 18 657 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19241375 JRNL DOI 10.1002/PRO.51 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-08. REMARK 100 THE PDBE ID CODE IS EBI-37343. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 400 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/ 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY; TOCSY; 13C- CTHSCQ; REMARK 210 1H-15N-HSQC; HNCO; HNCACB; REMARK 210 CACBCOHN REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CNS REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 83 -83.20 -136.81 REMARK 500 1 SER A 85 69.48 -167.39 REMARK 500 1 LYS A 107 -21.60 82.93 REMARK 500 1 SER A 122 -168.82 -165.13 REMARK 500 2 SER A 85 45.07 -144.59 REMARK 500 2 LYS A 107 -20.88 84.79 REMARK 500 3 SER A 83 -70.75 -52.15 REMARK 500 3 LYS A 107 -26.09 85.33 REMARK 500 4 SER A 85 60.35 -157.35 REMARK 500 4 LYS A 107 -31.33 84.09 REMARK 500 4 ASN A 121 35.55 -140.36 REMARK 500 4 SER A 122 -39.79 -169.98 REMARK 500 5 SER A 83 -65.92 84.57 REMARK 500 5 PHE A 103 108.23 -44.57 REMARK 500 5 LYS A 107 -27.31 86.57 REMARK 500 5 LYS A 123 158.74 176.90 REMARK 500 6 SER A 83 -172.88 -179.62 REMARK 500 6 SER A 85 50.19 -147.24 REMARK 500 6 CYS A 93 -43.69 -132.05 REMARK 500 6 LYS A 107 -23.07 84.77 REMARK 500 6 ASN A 121 -81.14 -93.28 REMARK 500 6 SER A 122 -173.57 167.86 REMARK 500 6 LYS A 123 -89.12 -61.88 REMARK 500 7 SER A 85 39.28 172.04 REMARK 500 7 LYS A 107 -26.68 84.97 REMARK 500 7 LYS A 123 70.67 51.39 REMARK 500 8 SER A 83 153.71 67.41 REMARK 500 8 SER A 85 46.15 -145.00 REMARK 500 8 PHE A 103 100.68 -44.65 REMARK 500 8 LYS A 107 -17.52 84.32 REMARK 500 8 SER A 122 77.76 58.76 REMARK 500 8 LYS A 123 -76.25 -64.88 REMARK 500 9 PHE A 103 106.40 -44.67 REMARK 500 9 LYS A 107 -34.25 84.57 REMARK 500 9 SER A 122 87.14 50.44 REMARK 500 9 LYS A 123 -85.17 56.65 REMARK 500 10 SER A 83 -70.02 -148.16 REMARK 500 10 SER A 85 78.22 -174.69 REMARK 500 10 PHE A 103 105.44 -44.98 REMARK 500 10 LYS A 107 -21.32 83.57 REMARK 500 10 SER A 122 77.31 54.99 REMARK 500 11 SER A 85 -34.11 77.36 REMARK 500 11 PHE A 103 100.59 -44.43 REMARK 500 11 LYS A 107 -9.52 81.27 REMARK 500 12 SER A 83 -76.63 -57.16 REMARK 500 12 PHE A 103 97.28 -44.70 REMARK 500 12 LYS A 107 -14.15 81.64 REMARK 500 12 ASN A 121 -0.20 -140.16 REMARK 500 13 SER A 83 -76.62 -75.11 REMARK 500 13 PHE A 103 152.16 -44.34 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 125 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 90 SG REMARK 620 2 CYS A 93 SG 115.5 REMARK 620 3 CYS A 114 SG 113.7 96.8 REMARK 620 4 CYS A 110 SG 103.3 115.1 112.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 125 DBREF 2W0T A 82 124 UNP Q969R5 LMBL2_HUMAN 82 124 SEQRES 1 A 43 GLY SER GLY SER GLU PRO ALA VAL CYS GLU MET CYS GLY SEQRES 2 A 43 ILE VAL GLY THR ARG GLU ALA PHE PHE SER LYS THR LYS SEQRES 3 A 43 ARG PHE CYS SER VAL SER CYS SER ARG SER TYR SER SER SEQRES 4 A 43 ASN SER LYS LYS HET ZN A 125 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 SER A 111 ASN A 121 1 11 SHEET 1 AA 2 PRO A 87 VAL A 89 0 SHEET 2 AA 2 VAL A 96 THR A 98 -1 O GLY A 97 N ALA A 88 LINK ZN ZN A 125 SG CYS A 90 1555 1555 2.35 LINK ZN ZN A 125 SG CYS A 93 1555 1555 2.35 LINK ZN ZN A 125 SG CYS A 114 1555 1555 2.37 LINK ZN ZN A 125 SG CYS A 110 1555 1555 2.36 SITE 1 AC1 4 CYS A 90 CYS A 93 CYS A 110 CYS A 114 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1