HEADER HYDROLASE/INHIBITOR 14-OCT-08 2W13 TITLE HIGH-RESOLUTION CRYSTAL STRUCTURE OF THE P-I SNAKE VENOM TITLE 2 METALLOPROTEINASE BAP1 IN COMPLEX WITH A PEPTIDOMIMETIC: INSIGHTS TITLE 3 INTO INHIBITOR BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC METALLOPROTEINASE BAP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 193-394; COMPND 5 SYNONYM: BAP1, HEMORRHAGIC METALLOPROTEINASE BAP1, BAP-1; COMPND 6 EC: 3.4.24.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS ASPER; SOURCE 3 ORGANISM_COMMON: TERCIOPELO; SOURCE 4 ORGANISM_TAXID: 8722; SOURCE 5 SECRETION: VENOM KEYWDS HYDROLASE INHIBITOR COMPLEX, METZINCIN, CHEMOTAXIS, ADAMALYSINS, KEYWDS 2 ENDOPEPTIDASE, METAL-BINDING, ZINC-DEPENDING, METALLOPROTEASE, KEYWDS 3 METALLOPROTEINASE-INHIBITOR COMPLEX, ZINC, TOXIN, SECRETED, KEYWDS 4 PROTEASE, HYDROLASE, P-I SNAKE VENOM METALLOPROTEINASE, ALPHA-BETA KEYWDS 5 PROTEINS, MATRIXMETALLOPROTEINASE, TUMOR NECROSIS FACTOR ALPHA KEYWDS 6 CONVERTING ENZYME, PYRROLIDONE CARBOXYLIC ACID, HYDROLASE-INHIBITOR KEYWDS 7 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.J.LINGOTT,C.SCHLEBERGER,J.M.GUTIERREZ,I.MERFORT REVDAT 4 13-DEC-23 2W13 1 REMARK LINK REVDAT 3 11-MAR-20 2W13 1 SEQRES LINK REVDAT 2 21-SEP-11 2W13 1 JRNL REMARK MODRES HETSYN REVDAT 2 2 1 FORMUL VERSN REVDAT 1 16-JUN-09 2W13 0 JRNL AUTH T.J.LINGOTT,C.SCHLEBERGER,J.M.GUTIERREZ,I.MERFORT JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF THE SNAKE VENOM JRNL TITL 2 METALLOPROTEINASE BAP1 COMPLEXED WITH A PEPTIDOMIMETIC: JRNL TITL 3 INSIGHT INTO INHIBITOR BINDING. JRNL REF BIOCHEMISTRY V. 48 6166 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19485419 JRNL DOI 10.1021/BI9002315 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.WATANABE,J.D.SHANNON,R.H.VALENTE,A.RUCAVADO,A.ALAPE-GIRON, REMARK 1 AUTH 2 A.S.KAMIGUTI,R.D.G.THEAKSTON,J.W.FOX,J.M.GUTIERREZ,R.K.ARNI REMARK 1 TITL AMINO ACID SEQUENCE AND CRYSTAL STRUCTURE OF BAP1, A REMARK 1 TITL 2 METALLOPROTEINASE FROM BOTHROPS ASPER SNAKE VENOM THAT REMARK 1 TITL 3 EXERTS MULTIPLE TISSUE-DAMAGING ACTIVITIES. REMARK 1 REF PROTEIN SCI. V. 12 2273 2003 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 14500885 REMARK 1 DOI 10.1110/PS.03102403 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 66242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.1620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1598 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1854 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2539 ; 1.776 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 6.598 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;38.164 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;11.271 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.768 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1447 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 895 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1261 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.303 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 50 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1138 ; 1.809 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1820 ; 2.442 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 794 ; 3.224 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 708 ; 4.276 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOMS OF LOOP 159-162 ARE MODELED (SEMI- OCCUPIED) IN REMARK 3 TWO DIFFERENT CONFORMATIONS. REMARK 4 REMARK 4 2W13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1290037796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : KMC-1, DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68715 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2W12 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NA(OAC), NH4(OAC), PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 27 O HOH A 2084 1.63 REMARK 500 NH2 ARG A 127 O HOH A 2252 1.86 REMARK 500 OG SER A 91 O HOH A 2227 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2232 O HOH A 2345 3545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 PRO A 195 C - N - CA ANGL. DEV. = -9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 -71.24 -110.28 REMARK 500 CYS A 117 -9.89 76.36 REMARK 500 CYS A 159 21.40 -142.29 REMARK 500 ALA A 161 48.99 -94.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2048 DISTANCE = 6.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 102.1 REMARK 620 3 HIS A 152 NE2 105.1 96.4 REMARK 620 4 WR2 A1204 OAK 100.3 87.8 152.8 REMARK 620 5 WR2 A1204 OAI 108.3 148.0 85.6 77.1 REMARK 620 N 1 2 3 4 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ND1 RELATED DB: PDB REMARK 900 AMINO ACID SEQUENCE AND CRYSTAL STRUCTURE OF BAP1, REMARK 900 AMETALLOPROTEINASE FROM BOTHROPS ASPER SNAKE VENOM THATEXERTS REMARK 900 MULTIPLE TISSUE- DAMAGING ACTIVITIES. REMARK 900 RELATED ID: 2W12 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P-I SNAKE VENOM METALLOPROTEINASE BAP1 IN REMARK 900 COMPLEX WITH A PEPTIDOMIMETIC INHIBITOR REMARK 900 RELATED ID: 2W14 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P-I SNAKE VENOM METALLOPROTEINASE BAP1 IN REMARK 900 COMPLEX WITH A PEPTIDOMIMETIC INHIBITOR REMARK 900 RELATED ID: 2W15 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P-I SNAKE VENOM METALLOPROTEINASE BAP1 IN REMARK 900 COMPLEX WITH A PEPTIDOMIMETIC INHIBITOR DBREF 2W13 A 1 202 UNP P83512 VMBP1_BOTAS 193 394 SEQRES 1 A 202 PCA ARG PHE SER PRO ARG TYR ILE GLU LEU ALA VAL VAL SEQRES 2 A 202 ALA ASP HIS GLY ILE PHE THR LYS TYR ASN SER ASN LEU SEQRES 3 A 202 ASN THR ILE ARG THR ARG VAL HIS GLU MET LEU ASN THR SEQRES 4 A 202 VAL ASN GLY PHE TYR ARG SER VAL ASP VAL HIS ALA PRO SEQRES 5 A 202 LEU ALA ASN LEU GLU VAL TRP SER LYS GLN ASP LEU ILE SEQRES 6 A 202 LYS VAL GLN LYS ASP SER SER LYS THR LEU LYS SER PHE SEQRES 7 A 202 GLY GLU TRP ARG GLU ARG ASP LEU LEU PRO ARG ILE SER SEQRES 8 A 202 HIS ASP HIS ALA GLN LEU LEU THR ALA VAL VAL PHE ASP SEQRES 9 A 202 GLY ASN THR ILE GLY ARG ALA TYR THR GLY GLY MET CYS SEQRES 10 A 202 ASP PRO ARG HIS SER VAL GLY VAL VAL ARG ASP HIS SER SEQRES 11 A 202 LYS ASN ASN LEU TRP VAL ALA VAL THR MET ALA HIS GLU SEQRES 12 A 202 LEU GLY HIS ASN LEU GLY ILE HIS HIS ASP THR GLY SER SEQRES 13 A 202 CYS SER CYS GLY ALA LYS SER CYS ILE MET ALA SER VAL SEQRES 14 A 202 LEU SER LYS VAL LEU SER TYR GLU PHE SER ASP CYS SER SEQRES 15 A 202 GLN ASN GLN TYR GLU THR TYR LEU THR ASN HIS ASN PRO SEQRES 16 A 202 GLN CYS ILE LEU ASN LYS PRO MODRES 2W13 PCA A 1 GLU PYROGLUTAMIC ACID HET PCA A 1 8 HET ZN A1203 1 HET WR2 A1204 31 HET GOL A1205 6 HET ACT A1206 4 HET GOL A1207 6 HET ACT A1208 4 HETNAM PCA PYROGLUTAMIC ACID HETNAM ZN ZINC ION HETNAM WR2 (2R,3R)-N^1^-[(1S)-2,2-DIMETHYL-1-(METHYLCARBAMOYL) HETNAM 2 WR2 PROPYL]-N^4^-HYDROXY-2-(2-METHYLPROPYL)-3-{[(1,3- HETNAM 3 WR2 THIAZOL-2-YLCARBONYL)AMINO]METHYL}BUTANEDIAMIDE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA C5 H7 N O3 FORMUL 2 ZN ZN 2+ FORMUL 3 WR2 C20 H33 N5 O5 S FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 8 HOH *345(H2 O) HELIX 1 1 ASP A 15 TYR A 22 1 8 HELIX 2 2 ASN A 25 ARG A 45 1 21 HELIX 3 3 ASP A 70 ILE A 90 1 21 HELIX 4 4 ASN A 132 LEU A 148 1 17 HELIX 5 5 SER A 179 ASN A 194 1 16 SHEET 1 B 5 LEU A 53 VAL A 58 0 SHEET 2 B 5 LEU A 10 ALA A 14 1 O LEU A 10 N ALA A 54 SHEET 3 B 5 HIS A 94 THR A 99 1 O HIS A 94 N ALA A 11 SHEET 4 B 5 VAL A 123 ARG A 127 1 O GLY A 124 N LEU A 97 SHEET 5 B 5 GLY A 109 ALA A 111 -1 N ARG A 110 O VAL A 125 SSBOND 1 CYS A 117 CYS A 197 1555 1555 2.02 SSBOND 2 CYS A 157 CYS A 181 1555 1555 2.08 SSBOND 3 CYS A 159 CYS A 164 1555 1555 2.13 LINK C PCA A 1 N ARG A 2 1555 1555 1.33 LINK NE2 HIS A 142 ZN ZN A1203 1555 1555 2.05 LINK NE2 HIS A 146 ZN ZN A1203 1555 1555 2.07 LINK NE2 HIS A 152 ZN ZN A1203 1555 1555 2.07 LINK ZN ZN A1203 OAK WR2 A1204 1555 1555 2.23 LINK ZN ZN A1203 OAI WR2 A1204 1555 1555 2.01 SITE 1 AC1 4 HIS A 142 HIS A 146 HIS A 152 WR2 A1204 SITE 1 AC3 6 ARG A 110 ALA A 111 GLN A 196 PRO A 202 SITE 2 AC3 6 WR2 A1204 HOH A2245 SITE 1 AC4 5 ASN A 23 SER A 72 ARG A 110 ASN A 200 SITE 2 AC4 5 HOH A2328 SITE 1 AC5 5 ARG A 32 ASN A 133 LYS A 201 HOH A2114 SITE 2 AC5 5 HOH A2343 SITE 1 AC6 7 ASN A 41 HIS A 50 PRO A 52 VAL A 102 SITE 2 AC6 7 ARG A 127 HOH A2344 HOH A2345 CRYST1 38.100 59.600 82.700 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012092 0.00000 HETATM 1 N PCA A 1 15.240 38.873 40.862 1.00 10.64 N ANISOU 1 N PCA A 1 1866 966 1210 49 -191 -57 N HETATM 2 CA PCA A 1 14.974 37.667 40.115 1.00 10.09 C ANISOU 2 CA PCA A 1 1685 1143 1005 92 -163 -189 C HETATM 3 CB PCA A 1 13.904 38.037 39.060 1.00 11.22 C ANISOU 3 CB PCA A 1 1705 1276 1280 144 -123 -66 C HETATM 4 CG PCA A 1 13.824 39.573 39.123 1.00 13.17 C ANISOU 4 CG PCA A 1 2031 1405 1567 176 -287 -102 C HETATM 5 CD PCA A 1 14.742 39.954 40.296 1.00 10.60 C ANISOU 5 CD PCA A 1 1841 1085 1099 173 -202 -58 C HETATM 6 OE PCA A 1 14.824 41.087 40.741 1.00 12.18 O ANISOU 6 OE PCA A 1 2079 1326 1221 251 -2 -94 O HETATM 7 C PCA A 1 16.249 37.165 39.408 1.00 9.21 C ANISOU 7 C PCA A 1 1658 980 858 39 -232 -67 C HETATM 8 O PCA A 1 17.108 37.963 38.963 1.00 9.41 O ANISOU 8 O PCA A 1 1515 1048 1012 99 -300 22 O