HEADER HYDROLASE 17-OCT-08 2W1N TITLE COHESIN AND FIBRONECTIN TYPE-III DOUBLE MODULE CONSTRUCT FROM THE TITLE 2 CLOSTRIDIUM PERFRINGENS GLYCOSIDE HYDROLASE GH84C COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-GLCNACASE NAGJ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COHESIN AND FIBRONECTIN TYPE-III, RESIDUES 765-1001; COMPND 5 SYNONYM: BETA-HEXOSAMINIDASE, N-ACETYL-BETA-GLUCOSAMINIDASE, BETA-N- COMPND 6 ACETYLHEXOSAMINIDASE, HEXOSAMINIDASE B, GH84, GLYCOSIDE HYDROLASE COMPND 7 FAMILY 84C; COMPND 8 EC: 3.2.1.52; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 STRAIN: 13; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS HEXOSAMINIDASE, GLYCOSIDE HYDROLASE, FIBRONECTIN TYPE-III, KEYWDS 2 CLOSTRIDIUM PERFRINGENS, BETA-N-ACETYLGLUCOSAMINIDASE, COHESIN, KEYWDS 3 HYDROLASE, COILED COIL, GLYCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR E.FICKO-BLEAN,K.J.GREGG,J.J.ADAMS,J.H.HEHEMANN,M.CZJZEK,S.J.SMITH, AUTHOR 2 A.B.BORASTON REVDAT 4 13-DEC-23 2W1N 1 REMARK REVDAT 3 14-APR-09 2W1N 1 JRNL SITE REVDAT 2 17-FEB-09 2W1N 1 JRNL REVDAT 1 03-FEB-09 2W1N 0 JRNL AUTH E.FICKO-BLEAN,K.J.GREGG,J.J.ADAMS,J.H.HEHEMANN,M.CZJZEK, JRNL AUTH 2 S.J.SMITH,A.B.BORASTON JRNL TITL PORTRAIT OF AN ENZYME: A COMPLETE STRUCTURAL ANALYSIS OF A JRNL TITL 2 MULTI-MODULAR BETA-N-ACETYLGLUCOSAMINIDASE FROM CLOSTRIDIUM JRNL TITL 3 PERFRINGENS JRNL REF J.BIOL.CHEM. V. 284 9876 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19193644 JRNL DOI 10.1074/JBC.M808954200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 22089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1274 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.06000 REMARK 3 B22 (A**2) : 2.50000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1777 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2408 ; 1.732 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 229 ; 6.804 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;37.745 ;26.456 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 316 ;15.446 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;22.559 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1320 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 873 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1221 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 233 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1163 ; 1.052 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1830 ; 1.725 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 692 ; 2.661 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 577 ; 4.088 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2W1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1290037761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27684 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 73.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2O4E REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 3.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.12250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.32200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.12250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.32200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 764 REMARK 465 VAL A 765 REMARK 465 HIS A 766 REMARK 465 GLY A 767 REMARK 465 LYS A 768 REMARK 465 LEU A 769 REMARK 465 LYS A 770 REMARK 465 GLU A 771 REMARK 465 ALA A 772 REMARK 465 ARG A 1001 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 908 O HOH A 2183 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2143 O HOH A 2143 2555 2.15 REMARK 500 O HOH A 2180 O HOH A 2186 2556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 872 124.84 -33.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 907 THR A 908 -142.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CBI RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLOSTRIDIUM PERFRINGENS NAGJ FAMILY 84 GLYCOSIDE REMARK 900 HYDROLASE, A HOMOLOGUE OF HUMAN O-GLCNACASE REMARK 900 RELATED ID: 2J1E RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF CBM32 FROM A N-ACETYL-BETA- REMARK 900 HEXOSAMINIDASE IN COMPLEX WITH LACNAC REMARK 900 RELATED ID: 2J7M RELATED DB: PDB REMARK 900 CHARACTERIZATION OF A FAMILY 32 CBM REMARK 900 RELATED ID: 2J1A RELATED DB: PDB REMARK 900 STRUCTURE OF CBM32 FROM CLOSTRIDIUM PERFRINGENS BETA-N- REMARK 900 ACETYLHEXOSAMINIDASE GH84C IN COMPLEX WITH GALACTOSE REMARK 900 RELATED ID: 2CBJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLOSTRIDIUM PERFRINGENS NAGJ FAMILY 84 GLYCOSIDE REMARK 900 HYDROLASE, A HOMOLOGUE OF HUMAN O-GLCNACASE IN COMPLEX WITH PUGNAC DBREF 2W1N A 764 764 PDB 2W1N 2W1N 764 764 DBREF 2W1N A 765 1001 UNP Q8XL08 OGA_CLOPE 765 1001 SEQRES 1 A 238 MET VAL HIS GLY LYS LEU LYS GLU ALA ALA GLU VAL THR SEQRES 2 A 238 GLY SER VAL SER LEU GLU ALA LEU GLU GLU VAL GLN VAL SEQRES 3 A 238 GLY GLU ASN ILE GLU VAL GLY VAL GLY ILE ASP GLU LEU SEQRES 4 A 238 VAL ASN ALA GLU ALA PHE ALA TYR ASP PHE THR LEU ASN SEQRES 5 A 238 TYR ASP GLU ASN ALA PHE GLU TYR VAL GLU ALA ILE SER SEQRES 6 A 238 ASP ASP GLY VAL PHE VAL ASN ALA LYS LYS ILE GLU ASP SEQRES 7 A 238 GLY LYS VAL ARG VAL LEU VAL SER SER LEU THR GLY GLU SEQRES 8 A 238 PRO LEU PRO ALA LYS GLU VAL LEU ALA LYS VAL VAL LEU SEQRES 9 A 238 ARG ALA GLU ALA LYS THR GLU GLY SER ASN LEU SER VAL SEQRES 10 A 238 THR ASN SER SER VAL GLY ASP GLY GLU GLY LEU VAL HIS SEQRES 11 A 238 GLU ILE ALA GLY THR GLU LYS THR VAL ASN ILE ILE GLU SEQRES 12 A 238 GLY THR SER PRO GLU ILE VAL VAL ASN PRO VAL ARG ASP SEQRES 13 A 238 PHE LYS ALA SER GLU ILE ASN LYS LYS ASN VAL THR VAL SEQRES 14 A 238 THR TRP THR GLU PRO GLU THR THR GLU GLY LEU GLU GLY SEQRES 15 A 238 TYR ILE LEU TYR LYS ASP GLY LYS LYS VAL ALA GLU ILE SEQRES 16 A 238 GLY LYS ASP GLU THR SER TYR THR PHE LYS LYS LEU ASN SEQRES 17 A 238 ARG HIS THR ILE TYR ASN PHE LYS ILE ALA ALA LYS TYR SEQRES 18 A 238 SER ASN GLY GLU VAL SER SER LYS GLU SER LEU THR LEU SEQRES 19 A 238 ARG THR ALA ARG HET ACT A3001 4 HETNAM ACT ACETATE ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 HOH *316(H2 O) SHEET 1 AA 4 THR A 776 GLU A 782 0 SHEET 2 AA 4 ASN A 792 VAL A 803 -1 O GLY A 796 N GLU A 782 SHEET 3 AA 4 VAL A 861 ALA A 869 -1 N LEU A 862 O VAL A 797 SHEET 4 AA 4 PHE A 821 ILE A 827 -1 O GLU A 822 N ARG A 868 SHEET 1 AB 6 GLU A 786 GLN A 788 0 SHEET 2 AB 6 THR A 898 ILE A 905 1 O ASN A 903 N VAL A 787 SHEET 3 AB 6 THR A 873 GLY A 886 -1 O THR A 873 N ILE A 904 SHEET 4 AB 6 ALA A 809 ASN A 815 -1 O ALA A 809 N GLY A 886 SHEET 5 AB 6 LYS A 843 SER A 850 -1 O VAL A 844 N LEU A 814 SHEET 6 AB 6 VAL A 832 GLU A 840 -1 O PHE A 833 N SER A 849 SHEET 1 AC 4 GLU A 786 GLN A 788 0 SHEET 2 AC 4 THR A 898 ILE A 905 1 O ASN A 903 N VAL A 787 SHEET 3 AC 4 THR A 873 GLY A 886 -1 O THR A 873 N ILE A 904 SHEET 4 AC 4 VAL A 892 GLU A 894 -1 O HIS A 893 N VAL A 885 SHEET 1 AD 3 ARG A 918 ILE A 925 0 SHEET 2 AD 3 VAL A 930 THR A 935 -1 O THR A 931 N SER A 923 SHEET 3 AD 3 SER A 964 PHE A 967 -1 O TYR A 965 N VAL A 932 SHEET 1 AE 4 LYS A 953 GLY A 959 0 SHEET 2 AE 4 LEU A 943 LYS A 950 -1 O TYR A 946 N ILE A 958 SHEET 3 AE 4 ILE A 975 TYR A 984 -1 O LYS A 979 N TYR A 949 SHEET 4 AE 4 GLU A 993 ARG A 998 -1 O GLU A 993 N ILE A 980 CISPEP 1 ALA A 773 GLU A 774 0 3.86 SITE 1 AC1 7 ALA A 809 ASP A 811 SER A 884 VAL A 885 SITE 2 AC1 7 GLY A 886 VAL A 892 HOH A2315 CRYST1 148.245 48.644 36.900 90.00 96.19 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006746 0.000000 0.000732 0.00000 SCALE2 0.000000 0.020558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027259 0.00000