HEADER TRANSFERASE 06-NOV-08 2W37 TITLE CRYSTAL STRUCTURE OF THE HEXAMERIC CATABOLIC ORNITHINE TITLE 2 TRANSCARBAMYLASE FROM LACTOBACILLUS HILGARDII COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORNITHINE CARBAMOYLTRANSFERASE, CATABOLIC; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ORNITHINE TRANSCARBAMYLASE, OTCASE; COMPND 5 EC: 2.1.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS HILGARDII; SOURCE 3 ORGANISM_TAXID: 1588; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109(DE3) KEYWDS TRANSCARBAMYLASE, METAL BINDING-SITE, HEXAMER, CYTOPLASM, ORNITHINE, KEYWDS 2 TRANSFERASE, ARGININE METABOLISM, CARBAMOYL PHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR B.DE LAS RIVAS,G.C.FOX,I.ANGULO,H.RODRIGUEZ,R.MUNOZ,J.M.MANCHENO REVDAT 2 13-DEC-23 2W37 1 REMARK LINK REVDAT 1 17-NOV-09 2W37 0 JRNL AUTH B.DE LAS RIVAS,G.C.FOX,I.ANGULO,M.M.RIPOLL,H.RODRIGUEZ, JRNL AUTH 2 R.MUNOZ,J.M.MANCHENO JRNL TITL CRYSTAL STRUCTURE OF THE HEXAMERIC CATABOLIC ORNITHINE JRNL TITL 2 TRANSCARBAMYLASE FROM LACTOBACILLUS HILGARDII: STRUCTURAL JRNL TITL 3 INSIGHTS INTO THE OLIGOMERIC ASSEMBLY AND METAL BINDING. JRNL REF J.MOL.BIOL. V. 393 425 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19666033 JRNL DOI 10.1016/J.JMB.2009.08.002 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 60594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3391 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8190 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11052 ; 1.360 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1020 ; 5.536 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 381 ;38.139 ;25.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1467 ;17.800 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;20.141 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1221 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6162 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3969 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5505 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 482 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5217 ; 0.710 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8133 ; 1.182 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3360 ; 1.638 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2919 ; 2.526 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 343 5 REMARK 3 1 B 3 B 343 5 REMARK 3 1 C 3 C 343 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1364 ; 0.16 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1364 ; 0.16 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1364 ; 0.14 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1313 ; 0.41 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 1313 ; 0.37 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 1313 ; 0.36 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1364 ; 0.80 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1364 ; 0.96 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1364 ; 0.89 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1313 ; 1.53 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1313 ; 1.81 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 1313 ; 1.67 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2W37 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1290038044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 78.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1DXH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -80.62300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 GLY A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B -15 REMARK 465 GLY B -14 REMARK 465 GLY B -13 REMARK 465 SER B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 GLY B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 MET C -15 REMARK 465 GLY C -14 REMARK 465 GLY C -13 REMARK 465 SER C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 GLY C -5 REMARK 465 ASP C -4 REMARK 465 ASP C -3 REMARK 465 ASP C -2 REMARK 465 ASP C -1 REMARK 465 LYS C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 107.40 -168.52 REMARK 500 HIS A 46 58.32 -152.17 REMARK 500 LEU A 135 120.11 145.15 REMARK 500 LYS A 157 115.29 -170.42 REMARK 500 ASN A 245 37.85 35.94 REMARK 500 LEU A 279 155.81 69.36 REMARK 500 ASN A 284 -167.79 -165.03 REMARK 500 MET A 302 -110.02 -117.08 REMARK 500 ASN B 8 114.90 -164.62 REMARK 500 HIS B 46 56.38 -152.61 REMARK 500 SER B 62 69.87 -160.80 REMARK 500 LEU B 135 120.06 138.69 REMARK 500 LYS B 157 116.63 -19.35 REMARK 500 ASP B 168 97.71 -65.17 REMARK 500 MET B 241 73.44 46.69 REMARK 500 ASN B 245 39.87 36.28 REMARK 500 LEU B 279 159.91 65.51 REMARK 500 ASN B 284 -164.43 -161.65 REMARK 500 MET B 302 -102.82 -112.49 REMARK 500 ASN C 8 113.58 -165.71 REMARK 500 HIS C 46 55.53 -155.30 REMARK 500 SER C 62 77.73 -154.14 REMARK 500 LEU C 135 122.49 146.75 REMARK 500 LEU C 279 159.37 68.89 REMARK 500 ASN C 284 -168.21 -160.54 REMARK 500 ASP C 286 38.30 -80.41 REMARK 500 MET C 302 -107.53 -112.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1344 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HOH A2058 O 86.3 REMARK 620 3 HIS B 79 NE2 95.9 91.7 REMARK 620 4 HOH B2048 O 169.1 83.2 87.2 REMARK 620 5 HIS C 79 NE2 98.7 171.7 94.3 91.4 REMARK 620 6 HOH C2034 O 99.7 84.3 163.6 76.6 88.4 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1344 DBREF 2W37 A -15 0 PDB 2W37 2W37 -15 0 DBREF 2W37 A 1 343 UNP Q8G998 OTCC_LACHI 1 343 DBREF 2W37 B -15 0 PDB 2W37 2W37 -15 0 DBREF 2W37 B 1 343 UNP Q8G998 OTCC_LACHI 1 343 DBREF 2W37 C -15 0 PDB 2W37 2W37 -15 0 DBREF 2W37 C 1 343 UNP Q8G998 OTCC_LACHI 1 343 SEQRES 1 A 359 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY ASP ASP SEQRES 2 A 359 ASP ASP LYS MET THR LYS ASP PHE ARG GLN ASN VAL PHE SEQRES 3 A 359 GLN GLY ARG SER VAL LEU ALA GLU LYS ASP PHE SER ALA SEQRES 4 A 359 ALA GLU LEU GLU TYR LEU ILE ASP PHE GLY LEU HIS LEU SEQRES 5 A 359 LYS ALA LEU LYS LYS ALA GLY ILE PRO HIS HIS TYR LEU SEQRES 6 A 359 GLU GLY LYS ASN ILE ALA LEU LEU PHE GLU LYS SER SER SEQRES 7 A 359 THR ARG THR ARG SER ALA PHE THR THR ALA SER ILE ASP SEQRES 8 A 359 LEU GLY ALA HIS PRO GLU TYR LEU GLY GLN ASN ASP ILE SEQRES 9 A 359 GLN LEU GLY LYS LYS GLU SER THR SER ASP THR ALA LYS SEQRES 10 A 359 VAL LEU GLY SER MET PHE ASP GLY ILE GLU PHE ARG GLY SEQRES 11 A 359 PHE LYS GLN SER ASP ALA GLU ILE LEU ALA ARG ASP SER SEQRES 12 A 359 GLY VAL PRO VAL TRP ASN GLY LEU THR ASP GLU TRP HIS SEQRES 13 A 359 PRO THR GLN MET LEU ALA ASP PHE MET THR VAL LYS GLU SEQRES 14 A 359 ASN PHE GLY LYS LEU GLN GLY LEU THR LEU THR PHE MET SEQRES 15 A 359 GLY ASP GLY ARG ASN ASN VAL ALA ASN SER LEU LEU VAL SEQRES 16 A 359 THR GLY ALA ILE LEU GLY VAL ASN ILE HIS ILE VAL ALA SEQRES 17 A 359 PRO LYS ALA LEU PHE PRO THR GLU GLU THR GLN ASN ILE SEQRES 18 A 359 ALA LYS GLY PHE ALA GLU LYS SER GLY ALA LYS LEU VAL SEQRES 19 A 359 ILE THR ASP ASP LEU ASP GLU GLY LEU LYS GLY SER ASN SEQRES 20 A 359 VAL VAL TYR THR ASP VAL TRP VAL SER MET GLY GLU SER SEQRES 21 A 359 ASN TRP GLU GLU ARG VAL LYS GLU LEU THR PRO TYR GLN SEQRES 22 A 359 VAL ASN MET GLU ALA MET LYS LYS THR GLY THR PRO ASP SEQRES 23 A 359 ASP GLN LEU ILE PHE MET HIS CYS LEU PRO ALA PHE HIS SEQRES 24 A 359 ASN THR ASP THR GLN TYR GLY LYS GLU ILE LYS GLU LYS SEQRES 25 A 359 TYR GLY ILE THR GLU MET GLU VAL THR ASP GLU VAL PHE SEQRES 26 A 359 THR SER LYS TYR ALA ARG GLN PHE GLU GLU ALA GLU ASN SEQRES 27 A 359 ARG MET HIS SER ILE LYS ALA MET MET ALA ALA THR LEU SEQRES 28 A 359 GLY ASN LEU PHE ILE PRO ARG VAL SEQRES 1 B 359 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY ASP ASP SEQRES 2 B 359 ASP ASP LYS MET THR LYS ASP PHE ARG GLN ASN VAL PHE SEQRES 3 B 359 GLN GLY ARG SER VAL LEU ALA GLU LYS ASP PHE SER ALA SEQRES 4 B 359 ALA GLU LEU GLU TYR LEU ILE ASP PHE GLY LEU HIS LEU SEQRES 5 B 359 LYS ALA LEU LYS LYS ALA GLY ILE PRO HIS HIS TYR LEU SEQRES 6 B 359 GLU GLY LYS ASN ILE ALA LEU LEU PHE GLU LYS SER SER SEQRES 7 B 359 THR ARG THR ARG SER ALA PHE THR THR ALA SER ILE ASP SEQRES 8 B 359 LEU GLY ALA HIS PRO GLU TYR LEU GLY GLN ASN ASP ILE SEQRES 9 B 359 GLN LEU GLY LYS LYS GLU SER THR SER ASP THR ALA LYS SEQRES 10 B 359 VAL LEU GLY SER MET PHE ASP GLY ILE GLU PHE ARG GLY SEQRES 11 B 359 PHE LYS GLN SER ASP ALA GLU ILE LEU ALA ARG ASP SER SEQRES 12 B 359 GLY VAL PRO VAL TRP ASN GLY LEU THR ASP GLU TRP HIS SEQRES 13 B 359 PRO THR GLN MET LEU ALA ASP PHE MET THR VAL LYS GLU SEQRES 14 B 359 ASN PHE GLY LYS LEU GLN GLY LEU THR LEU THR PHE MET SEQRES 15 B 359 GLY ASP GLY ARG ASN ASN VAL ALA ASN SER LEU LEU VAL SEQRES 16 B 359 THR GLY ALA ILE LEU GLY VAL ASN ILE HIS ILE VAL ALA SEQRES 17 B 359 PRO LYS ALA LEU PHE PRO THR GLU GLU THR GLN ASN ILE SEQRES 18 B 359 ALA LYS GLY PHE ALA GLU LYS SER GLY ALA LYS LEU VAL SEQRES 19 B 359 ILE THR ASP ASP LEU ASP GLU GLY LEU LYS GLY SER ASN SEQRES 20 B 359 VAL VAL TYR THR ASP VAL TRP VAL SER MET GLY GLU SER SEQRES 21 B 359 ASN TRP GLU GLU ARG VAL LYS GLU LEU THR PRO TYR GLN SEQRES 22 B 359 VAL ASN MET GLU ALA MET LYS LYS THR GLY THR PRO ASP SEQRES 23 B 359 ASP GLN LEU ILE PHE MET HIS CYS LEU PRO ALA PHE HIS SEQRES 24 B 359 ASN THR ASP THR GLN TYR GLY LYS GLU ILE LYS GLU LYS SEQRES 25 B 359 TYR GLY ILE THR GLU MET GLU VAL THR ASP GLU VAL PHE SEQRES 26 B 359 THR SER LYS TYR ALA ARG GLN PHE GLU GLU ALA GLU ASN SEQRES 27 B 359 ARG MET HIS SER ILE LYS ALA MET MET ALA ALA THR LEU SEQRES 28 B 359 GLY ASN LEU PHE ILE PRO ARG VAL SEQRES 1 C 359 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY ASP ASP SEQRES 2 C 359 ASP ASP LYS MET THR LYS ASP PHE ARG GLN ASN VAL PHE SEQRES 3 C 359 GLN GLY ARG SER VAL LEU ALA GLU LYS ASP PHE SER ALA SEQRES 4 C 359 ALA GLU LEU GLU TYR LEU ILE ASP PHE GLY LEU HIS LEU SEQRES 5 C 359 LYS ALA LEU LYS LYS ALA GLY ILE PRO HIS HIS TYR LEU SEQRES 6 C 359 GLU GLY LYS ASN ILE ALA LEU LEU PHE GLU LYS SER SER SEQRES 7 C 359 THR ARG THR ARG SER ALA PHE THR THR ALA SER ILE ASP SEQRES 8 C 359 LEU GLY ALA HIS PRO GLU TYR LEU GLY GLN ASN ASP ILE SEQRES 9 C 359 GLN LEU GLY LYS LYS GLU SER THR SER ASP THR ALA LYS SEQRES 10 C 359 VAL LEU GLY SER MET PHE ASP GLY ILE GLU PHE ARG GLY SEQRES 11 C 359 PHE LYS GLN SER ASP ALA GLU ILE LEU ALA ARG ASP SER SEQRES 12 C 359 GLY VAL PRO VAL TRP ASN GLY LEU THR ASP GLU TRP HIS SEQRES 13 C 359 PRO THR GLN MET LEU ALA ASP PHE MET THR VAL LYS GLU SEQRES 14 C 359 ASN PHE GLY LYS LEU GLN GLY LEU THR LEU THR PHE MET SEQRES 15 C 359 GLY ASP GLY ARG ASN ASN VAL ALA ASN SER LEU LEU VAL SEQRES 16 C 359 THR GLY ALA ILE LEU GLY VAL ASN ILE HIS ILE VAL ALA SEQRES 17 C 359 PRO LYS ALA LEU PHE PRO THR GLU GLU THR GLN ASN ILE SEQRES 18 C 359 ALA LYS GLY PHE ALA GLU LYS SER GLY ALA LYS LEU VAL SEQRES 19 C 359 ILE THR ASP ASP LEU ASP GLU GLY LEU LYS GLY SER ASN SEQRES 20 C 359 VAL VAL TYR THR ASP VAL TRP VAL SER MET GLY GLU SER SEQRES 21 C 359 ASN TRP GLU GLU ARG VAL LYS GLU LEU THR PRO TYR GLN SEQRES 22 C 359 VAL ASN MET GLU ALA MET LYS LYS THR GLY THR PRO ASP SEQRES 23 C 359 ASP GLN LEU ILE PHE MET HIS CYS LEU PRO ALA PHE HIS SEQRES 24 C 359 ASN THR ASP THR GLN TYR GLY LYS GLU ILE LYS GLU LYS SEQRES 25 C 359 TYR GLY ILE THR GLU MET GLU VAL THR ASP GLU VAL PHE SEQRES 26 C 359 THR SER LYS TYR ALA ARG GLN PHE GLU GLU ALA GLU ASN SEQRES 27 C 359 ARG MET HIS SER ILE LYS ALA MET MET ALA ALA THR LEU SEQRES 28 C 359 GLY ASN LEU PHE ILE PRO ARG VAL HET NI A1344 1 HETNAM NI NICKEL (II) ION FORMUL 4 NI NI 2+ FORMUL 5 HOH *333(H2 O) HELIX 1 1 ALA A 23 ALA A 42 1 20 HELIX 2 2 THR A 63 ASP A 75 1 13 HELIX 3 3 THR A 96 MET A 106 1 11 HELIX 4 4 GLN A 117 ASP A 126 1 10 HELIX 5 5 PRO A 141 PHE A 155 1 15 HELIX 6 6 ASN A 172 LEU A 184 1 13 HELIX 7 7 GLU A 200 SER A 213 1 14 HELIX 8 8 LEU A 223 LEU A 227 1 5 HELIX 9 9 TRP A 246 LEU A 253 1 8 HELIX 10 10 MET A 260 LYS A 265 1 6 HELIX 11 11 GLN A 288 TYR A 297 1 10 HELIX 12 12 ASP A 306 PHE A 309 1 4 HELIX 13 13 GLN A 316 LEU A 335 1 20 HELIX 14 14 ALA B 23 ALA B 42 1 20 HELIX 15 15 THR B 63 ASP B 75 1 13 HELIX 16 16 THR B 96 MET B 106 1 11 HELIX 17 17 GLN B 117 ASP B 126 1 10 HELIX 18 18 PRO B 141 PHE B 155 1 15 HELIX 19 19 ASN B 172 LEU B 184 1 13 HELIX 20 20 GLU B 200 SER B 213 1 14 HELIX 21 21 LEU B 223 LEU B 227 1 5 HELIX 22 22 TRP B 246 LEU B 253 1 8 HELIX 23 23 MET B 260 LYS B 265 1 6 HELIX 24 24 GLN B 288 TYR B 297 1 10 HELIX 25 25 ASP B 306 PHE B 309 1 4 HELIX 26 26 GLN B 316 LEU B 335 1 20 HELIX 27 27 ALA C 23 ALA C 42 1 20 HELIX 28 28 THR C 63 ASP C 75 1 13 HELIX 29 29 THR C 96 MET C 106 1 11 HELIX 30 30 GLN C 117 ASP C 126 1 10 HELIX 31 31 PRO C 141 PHE C 155 1 15 HELIX 32 32 ASN C 172 LEU C 184 1 13 HELIX 33 33 GLU C 200 SER C 213 1 14 HELIX 34 34 LEU C 223 LEU C 227 1 5 HELIX 35 35 TRP C 246 LEU C 253 1 8 HELIX 36 36 MET C 260 LYS C 265 1 6 HELIX 37 37 GLN C 288 TYR C 297 1 10 HELIX 38 38 ASP C 306 PHE C 309 1 4 HELIX 39 39 GLN C 316 LEU C 335 1 20 SHEET 1 AA 4 HIS A 79 LEU A 83 0 SHEET 2 AA 4 ASN A 53 GLU A 59 1 O ILE A 54 N GLU A 81 SHEET 3 AA 4 GLY A 109 ARG A 113 1 O GLY A 109 N ALA A 55 SHEET 4 AA 4 VAL A 131 LEU A 135 1 O TRP A 132 N PHE A 112 SHEET 1 AB 5 LEU A 217 THR A 220 0 SHEET 2 AB 5 ASN A 187 VAL A 191 1 O ILE A 188 N VAL A 218 SHEET 3 AB 5 THR A 162 MET A 166 1 O LEU A 163 N HIS A 189 SHEET 4 AB 5 VAL A 232 THR A 235 1 O VAL A 232 N THR A 164 SHEET 5 AB 5 ILE A 274 HIS A 277 1 O ILE A 274 N VAL A 233 SHEET 1 BA 4 HIS B 79 LEU B 83 0 SHEET 2 BA 4 ASN B 53 GLU B 59 1 O ILE B 54 N GLU B 81 SHEET 3 BA 4 GLY B 109 ARG B 113 1 O GLY B 109 N ALA B 55 SHEET 4 BA 4 VAL B 131 LEU B 135 1 O TRP B 132 N PHE B 112 SHEET 1 BB 5 LEU B 217 THR B 220 0 SHEET 2 BB 5 ASN B 187 VAL B 191 1 O ILE B 188 N VAL B 218 SHEET 3 BB 5 THR B 162 MET B 166 1 O LEU B 163 N HIS B 189 SHEET 4 BB 5 VAL B 232 THR B 235 1 O VAL B 232 N THR B 164 SHEET 5 BB 5 ILE B 274 HIS B 277 1 O ILE B 274 N VAL B 233 SHEET 1 CA 4 HIS C 79 LEU C 83 0 SHEET 2 CA 4 ASN C 53 GLU C 59 1 O ILE C 54 N GLU C 81 SHEET 3 CA 4 GLY C 109 ARG C 113 1 O GLY C 109 N ALA C 55 SHEET 4 CA 4 VAL C 131 LEU C 135 1 O TRP C 132 N PHE C 112 SHEET 1 CB 5 LEU C 217 THR C 220 0 SHEET 2 CB 5 ASN C 187 VAL C 191 1 O ILE C 188 N VAL C 218 SHEET 3 CB 5 THR C 162 MET C 166 1 O LEU C 163 N HIS C 189 SHEET 4 CB 5 VAL C 232 THR C 235 1 O VAL C 232 N THR C 164 SHEET 5 CB 5 ILE C 274 HIS C 277 1 O ILE C 274 N VAL C 233 LINK NE2 HIS A 79 NI NI A1344 1555 1555 2.17 LINK NI NI A1344 O HOH A2058 1555 1555 2.22 LINK NI NI A1344 NE2 HIS B 79 1555 1555 2.24 LINK NI NI A1344 O HOH B2048 1555 1555 2.11 LINK NI NI A1344 NE2 HIS C 79 1555 1555 2.21 LINK NI NI A1344 O HOH C2034 1555 1555 2.19 CISPEP 1 LEU A 279 PRO A 280 0 -6.34 CISPEP 2 LEU B 279 PRO B 280 0 -10.00 CISPEP 3 LEU C 279 PRO C 280 0 -9.74 SITE 1 AC1 6 HIS A 79 HOH A2058 HIS B 79 HOH B2048 SITE 2 AC1 6 HIS C 79 HOH C2034 CRYST1 156.805 156.805 80.623 90.00 90.00 120.00 P 3 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006377 0.003682 0.000000 0.00000 SCALE2 0.000000 0.007364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012403 0.00000